Wall clock time and date at job start Tue Mar 31 2020 02:48:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.87149 * 2 1
4 4 C 1.54315 * 109.88508 * 121.01541 * 2 1 3
5 5 H 1.09005 * 110.72207 * 215.59089 * 4 2 1
6 6 N 1.46497 * 110.72358 * 338.86239 * 4 2 1
7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2
8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4
9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4
10 10 N 1.31626 * 119.99782 * 359.97438 * 9 7 6
11 11 Si 1.86797 * 120.00506 * 179.97438 * 9 7 6
12 12 H 1.48507 * 109.46947 * 59.99182 * 11 9 7
13 13 H 1.48495 * 109.47423 * 179.97438 * 11 9 7
14 14 H 1.48506 * 109.46928 * 299.99992 * 11 9 7
15 15 C 1.55156 * 102.94436 * 97.22518 * 4 2 1
16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2
17 17 N 1.47017 * 109.87941 * 238.82754 * 2 1 3
18 18 C 1.34780 * 125.65357 * 59.48599 * 17 2 1
19 19 O 1.21281 * 119.99587 * 359.97438 * 18 17 2
20 20 C 1.50694 * 120.00043 * 179.97438 * 18 17 2
21 21 C 1.50703 * 109.47112 * 179.97438 * 20 18 17
22 22 O 1.21282 * 119.99919 * 0.02562 * 21 20 18
23 23 N 1.34778 * 120.00208 * 179.97438 * 21 20 18
24 24 C 1.46497 * 120.00126 * 180.02562 * 23 21 20
25 25 C 1.46500 * 119.99990 * 359.97438 * 23 21 20
26 26 H 1.09004 * 109.47271 * 298.98374 * 1 2 3
27 27 H 1.08999 * 109.47439 * 58.98369 * 1 2 3
28 28 H 1.09000 * 109.46977 * 178.98918 * 1 2 3
29 29 H 0.97005 * 119.99905 * 19.97312 * 6 4 2
30 30 H 0.97006 * 120.00022 * 180.02562 * 10 9 7
31 31 H 1.09002 * 111.00677 * 153.57697 * 15 4 2
32 32 H 1.09002 * 111.00564 * 277.38955 * 15 4 2
33 33 H 1.09008 * 110.36753 * 81.85112 * 16 15 4
34 34 H 1.09001 * 110.37094 * 204.16995 * 16 15 4
35 35 H 1.09001 * 109.47240 * 299.99566 * 20 18 17
36 36 H 1.09000 * 109.47238 * 59.99771 * 20 18 17
37 37 H 1.09000 * 109.47428 * 89.99855 * 24 23 21
38 38 H 1.08991 * 109.47533 * 210.00104 * 24 23 21
39 39 H 1.09005 * 109.47344 * 330.00428 * 24 23 21
40 40 H 1.09000 * 109.46865 * 90.00042 * 25 23 21
41 41 H 1.08999 * 109.47162 * 210.00219 * 25 23 21
42 42 H 1.08997 * 109.46986 * 330.00005 * 25 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0549 -0.7477 1.2437
5 1 2.9657 -0.2808 1.6186
6 7 1.0294 -0.7994 2.2886
7 6 1.3879 -1.0366 3.5888
8 1 2.4267 -1.1859 3.8438
9 6 0.4161 -1.0861 4.5787
10 7 -0.8499 -0.9046 4.2678
11 14 0.9051 -1.4103 6.3522
12 1 1.8324 -0.3456 6.8125
13 1 -0.3086 -1.4129 7.2078
14 1 1.5805 -2.7295 6.4462
15 6 2.3519 -2.1685 0.6954
16 6 2.8564 -1.8517 -0.7346
17 7 2.0299 -0.7156 -1.1829
18 6 1.7741 -0.3887 -2.4652
19 8 1.0761 0.5702 -2.7188
20 6 2.3554 -1.2144 -3.5837
21 6 1.9208 -0.6425 -4.9086
22 8 1.2096 0.3393 -4.9412
23 7 2.3235 -1.2215 -6.0571
24 6 1.9015 -0.6652 -7.3450
25 6 3.1840 -2.4064 -6.0177
26 1 -0.3634 0.4980 0.8990
27 1 -0.3634 0.5295 -0.8807
28 1 -0.3633 -1.0275 -0.0181
29 1 0.0963 -0.6656 2.0595
30 1 -1.5290 -0.9388 4.9597
31 1 3.1271 -2.6600 1.2833
32 1 1.4454 -2.7729 0.6649
33 1 3.9089 -1.5690 -0.7116
34 1 2.7079 -2.7111 -1.3884
35 1 3.4434 -1.1981 -3.5199
36 1 2.0018 -2.2420 -3.4984
37 1 2.6289 0.0757 -7.6767
38 1 1.8358 -1.4651 -8.0824
39 1 0.9258 -0.1920 -7.2343
40 1 2.5658 -3.3038 -5.9953
41 1 3.8185 -2.4243 -6.9039
42 1 3.8081 -2.3727 -5.1248
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001179678442.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:10
Heat of formation + Delta-G solvation = -60.971777 kcal
Electronic energy + Delta-G solvation = -22905.400258 eV
Core-core repulsion = 19499.663203 eV
Total energy + Delta-G solvation = -3405.737055 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.58167 -40.44525 -38.60544 -36.45087 -35.85784 -33.62892 -32.27482 -31.83515
-30.27629 -28.52007 -26.76485 -26.71714 -25.32367 -23.82680 -21.52636 -20.30779
-19.61268 -19.40932 -18.55749 -17.41735 -17.20645 -16.95955 -16.79997 -16.24088
-16.14211 -15.54239 -15.41757 -14.68541 -14.52533 -14.20912 -14.08936 -13.82694
-13.53513 -13.44848 -13.35612 -13.22486 -13.02406 -12.90488 -12.86032 -12.80001
-12.75920 -12.49610 -12.11162 -12.00313 -11.57678 -11.49119 -11.05141 -10.87704
-10.43097 -9.62259 -9.58479 -8.99140 -7.91767 -5.21008 1.50101 1.53220
1.59074 1.61338 1.72197 1.74934 2.31998 2.59810 3.35533 3.42937
3.61479 3.83217 3.92049 3.97994 4.22532 4.24662 4.30843 4.41606
4.45576 4.47304 4.47621 4.54129 4.60541 4.67975 4.85055 4.86136
4.90131 4.93706 5.03575 5.09062 5.22171 5.30675 5.38498 5.54084
5.57284 5.58513 6.29625 6.35016 6.64818 7.17631 7.34910 7.36711
8.11291 8.34291 9.31957
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.044210 B = 0.003287 C = 0.003140
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 633.184643 B = 8516.882421 C = 8915.221233
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.136 3.864
3 H 0.058 0.942
4 C 0.165 3.835
5 H 0.067 0.933
6 N -0.735 5.735
7 C -0.238 4.238
8 H 0.083 0.917
9 C -0.078 4.078
10 N -0.973 5.973
11 Si 0.975 3.025
12 H -0.279 1.279
13 H -0.301 1.301
14 H -0.274 1.274
15 C -0.145 4.145
16 C 0.103 3.897
17 N -0.611 5.611
18 C 0.515 3.485
19 O -0.558 6.558
20 C -0.143 4.143
21 C 0.500 3.500
22 O -0.560 6.560
23 N -0.624 5.624
24 C 0.083 3.917
25 C 0.066 3.934
26 H 0.054 0.946
27 H 0.048 0.952
28 H 0.049 0.951
29 H 0.379 0.621
30 H 0.250 0.750
31 H 0.090 0.910
32 H 0.054 0.946
33 H 0.099 0.901
34 H 0.110 0.890
35 H 0.163 0.837
36 H 0.156 0.844
37 H 0.057 0.943
38 H 0.101 0.899
39 H 0.046 0.954
40 H 0.072 0.928
41 H 0.091 0.909
42 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.302 -8.798 -21.576 27.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.031 3.969
3 H 0.076 0.924
4 C 0.055 3.945
5 H 0.085 0.915
6 N -0.378 5.378
7 C -0.369 4.369
8 H 0.101 0.899
9 C -0.270 4.270
10 N -0.624 5.624
11 Si 0.804 3.196
12 H -0.205 1.205
13 H -0.228 1.228
14 H -0.200 1.200
15 C -0.186 4.186
16 C -0.018 4.018
17 N -0.347 5.347
18 C 0.304 3.696
19 O -0.435 6.435
20 C -0.185 4.185
21 C 0.287 3.713
22 O -0.437 6.437
23 N -0.359 5.359
24 C -0.060 4.060
25 C -0.075 4.075
26 H 0.073 0.927
27 H 0.067 0.933
28 H 0.068 0.932
29 H 0.215 0.785
30 H 0.058 0.942
31 H 0.109 0.891
32 H 0.073 0.927
33 H 0.117 0.883
34 H 0.129 0.871
35 H 0.180 0.820
36 H 0.174 0.826
37 H 0.076 0.924
38 H 0.120 0.880
39 H 0.065 0.935
40 H 0.090 0.910
41 H 0.110 0.890
42 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 13.643 -7.775 -21.683 26.772
hybrid contribution -0.848 0.301 1.158 1.467
sum 12.796 -7.473 -20.525 25.315
Atomic orbital electron populations
1.21806 0.96327 1.01254 1.00783 1.21496 0.93893 0.95650 0.85872
0.92433 1.21401 0.91904 0.94660 0.86518 0.91526 1.42887 1.05818
1.85567 1.03499 1.19636 0.93365 1.38830 0.85097 0.89903 1.25583
0.95365 1.03853 1.02213 1.69834 1.00395 1.58772 1.33404 0.85193
0.76222 0.78352 0.79857 1.20523 1.22811 1.19968 1.23353 1.01467
0.98155 0.95618 1.22630 0.95324 0.88592 0.95269 1.48666 1.50910
1.31178 1.03915 1.20495 0.80997 0.85310 0.82839 1.90827 1.39165
1.30384 1.83112 1.21639 1.06040 1.02132 0.88689 1.20645 0.80348
0.83632 0.86652 1.90850 1.37966 1.27548 1.87350 1.47932 1.51325
1.31273 1.05412 1.21690 0.99986 1.00053 0.84230 1.22193 0.94237
0.85600 1.05444 0.92741 0.93274 0.93202 0.78483 0.94166 0.89136
0.92672 0.88330 0.87142 0.81971 0.82636 0.92442 0.88017 0.93480
0.90986 0.88989 0.88791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.94 7.95 71.98 0.57 -5.37 16
2 C 0.14 4.96 3.48 45.34 0.16 5.12 16
3 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16
4 C 0.16 6.17 3.46 46.18 0.16 6.33 16
5 H 0.07 2.43 8.12 -2.38 -0.02 2.42 16
6 N -0.73 -36.13 5.02 -317.34 -1.59 -37.72 16
7 C -0.24 -12.71 9.98 84.03 0.84 -11.87 16
8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16
9 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16
10 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16
11 Si 0.97 45.37 29.55 68.60 2.03 47.40 16
12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
13 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16
14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
15 C -0.15 -4.16 6.77 31.98 0.22 -3.95 16
16 C 0.10 1.99 6.69 86.85 0.58 2.57 16
17 N -0.61 -17.45 3.08 -787.96 -2.43 -19.88 16
18 C 0.52 15.76 7.62 87.65 0.67 16.42 16
19 O -0.56 -24.04 13.08 20.41 0.27 -23.77 16
20 C -0.14 -2.50 3.75 29.10 0.11 -2.39 16
21 C 0.50 12.33 7.67 87.66 0.67 13.00 16
22 O -0.56 -21.45 13.76 20.40 0.28 -21.17 16
23 N -0.62 -9.75 3.27 -871.90 -2.85 -12.60 16
24 C 0.08 1.22 10.44 127.77 1.33 2.55 16
25 C 0.07 0.30 10.24 127.77 1.31 1.61 16
26 H 0.05 2.49 6.67 -2.38 -0.02 2.47 16
27 H 0.05 2.12 6.76 -2.39 -0.02 2.11 16
28 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16
29 H 0.38 20.36 4.92 -92.70 -0.46 19.90 16
30 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16
31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16
32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
33 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16
34 H 0.11 1.28 7.48 -2.39 -0.02 1.26 16
35 H 0.16 1.39 7.40 -2.39 -0.02 1.37 16
36 H 0.16 1.57 7.81 -2.39 -0.02 1.55 16
37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
38 H 0.10 0.77 8.07 -2.39 -0.02 0.75 16
39 H 0.05 0.98 7.42 -2.38 -0.02 0.97 16
40 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16
41 H 0.09 0.11 8.07 -2.39 -0.02 0.09 16
42 H 0.09 0.07 6.44 -2.39 -0.02 0.05 16
Total: -1.00 -85.72 337.94 3.62 -82.09
By element:
Atomic # 1 Polarization: 24.46 SS G_CDS: 0.56 Total: 25.02 kcal
Atomic # 6 Polarization: 12.98 SS G_CDS: 7.08 Total: 20.06 kcal
Atomic # 7 Polarization: -123.04 SS G_CDS: -6.59 Total: -129.63 kcal
Atomic # 8 Polarization: -45.49 SS G_CDS: 0.55 Total: -44.94 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -85.72 3.62 -82.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001179678442.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.121 kcal
(2) G-P(sol) polarization free energy of solvation -85.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.093 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds