Wall clock time and date at job start Tue Mar 31 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.46990 * 2 1 4 4 H 1.09000 * 109.47833 * 304.99695 * 3 2 1 5 5 N 1.46505 * 109.47434 * 64.99740 * 3 2 1 6 6 C 1.34771 * 119.99910 * 274.99990 * 5 3 2 7 7 C 1.50698 * 119.99838 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00393 * 359.97438 * 6 5 3 9 9 C 1.50706 * 109.47250 * 184.99715 * 3 2 1 10 10 O 1.21278 * 119.99926 * 240.00027 * 9 3 2 11 11 N 1.34771 * 119.99931 * 60.00008 * 9 3 2 12 12 C 1.47425 * 125.64767 * 359.69212 * 11 9 3 13 13 C 1.54910 * 104.83231 * 156.13676 * 12 11 9 14 14 C 1.55160 * 101.58122 * 37.00939 * 13 12 11 15 15 H 1.09003 * 110.87062 * 82.93498 * 14 13 12 16 16 N 1.46502 * 110.72023 * 206.13218 * 14 13 12 17 17 C 1.36937 * 120.00040 * 268.52290 * 16 14 13 18 18 H 1.08001 * 119.99972 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99922 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99928 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00322 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46954 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47176 * 119.99959 * 21 19 17 24 24 H 1.48499 * 109.47701 * 240.00664 * 21 19 17 25 25 C 1.47026 * 125.65100 * 180.02562 * 11 9 3 26 26 H 1.09002 * 109.46831 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47564 * 300.00494 * 1 2 3 28 28 H 1.09009 * 109.46852 * 60.00241 * 1 2 3 29 29 H 1.09002 * 109.47548 * 240.00063 * 2 1 3 30 30 H 1.09001 * 109.46978 * 119.99463 * 2 1 3 31 31 H 0.97002 * 119.99544 * 94.99861 * 5 3 2 32 32 H 1.08999 * 109.47268 * 90.00129 * 7 6 5 33 33 H 1.09003 * 109.47091 * 210.00541 * 7 6 5 34 34 H 1.09000 * 109.47131 * 329.99997 * 7 6 5 35 35 H 1.09001 * 110.36478 * 274.97629 * 12 11 9 36 36 H 1.08998 * 110.36859 * 37.30006 * 12 11 9 37 37 H 1.08991 * 111.00552 * 278.93287 * 13 12 11 38 38 H 1.09004 * 111.03615 * 155.09334 * 13 12 11 39 39 H 0.97005 * 119.99736 * 88.52034 * 16 14 13 40 40 H 0.97008 * 120.00161 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.87531 * 300.21113 * 25 11 9 42 42 H 1.09000 * 109.87938 * 61.37366 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6523 2.0976 1.2518 6 6 0.4350 2.6645 1.3668 7 6 0.0361 3.3378 2.6547 8 8 -0.3394 2.6327 0.4340 9 6 3.5419 1.4444 -0.1238 10 8 4.2215 1.9436 0.7478 11 7 4.1298 0.8912 -1.2030 12 6 3.4279 0.2473 -2.3282 13 6 4.4146 0.3438 -3.5185 14 6 5.7782 0.1253 -2.8112 15 1 5.9782 -0.9374 -2.6733 16 7 6.8612 0.7609 -3.5657 17 6 7.5463 0.0475 -4.5128 18 1 7.2879 -0.9836 -4.7038 19 6 8.5721 0.6500 -5.2280 20 7 8.8866 1.9067 -4.9956 21 14 9.5072 -0.3233 -6.5195 22 1 8.9644 -1.7039 -6.5880 23 1 9.3540 0.3344 -7.8420 24 1 10.9460 -0.3741 -6.1555 25 6 5.5776 0.8238 -1.4499 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2718 2.1232 1.9978 32 1 0.3212 4.3892 2.6184 33 1 -1.0429 3.2582 2.7872 34 1 0.5415 2.8529 3.4899 35 1 3.2151 -0.7961 -2.0955 36 1 2.5056 0.7818 -2.5558 37 1 4.3695 1.3281 -3.9845 38 1 4.2235 -0.4416 -4.2498 39 1 7.0930 1.6871 -3.3944 40 1 9.6033 2.3278 -5.4957 41 1 5.9948 1.8303 -1.4848 42 1 6.0615 0.2467 -0.6620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185806738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:32 Heat of formation + Delta-G solvation = -58.593750 kcal Electronic energy + Delta-G solvation = -22803.764391 eV Core-core repulsion = 19398.130455 eV Total energy + Delta-G solvation = -3405.633936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.69755 -39.38444 -37.45632 -35.51227 -34.24783 -32.83356 -31.50549 -29.96763 -29.62139 -28.38923 -26.56302 -23.76632 -23.09407 -21.87398 -20.67523 -20.23627 -19.50457 -17.63158 -17.46029 -16.74794 -16.25592 -15.93769 -15.66694 -15.04289 -14.64990 -14.27230 -14.10605 -13.61703 -13.57860 -13.35472 -12.91221 -12.86280 -12.78447 -12.48399 -12.34889 -12.01748 -11.87226 -11.81400 -11.54106 -11.26829 -11.03738 -10.86821 -10.72642 -10.38247 -10.11227 -10.07154 -9.87427 -9.79367 -9.24646 -9.02512 -8.53626 -7.09819 -5.86540 -3.17601 2.40301 2.56080 2.70314 3.27810 3.38033 3.43740 3.46088 4.28734 4.50541 4.59893 4.71378 4.83871 4.91803 4.96189 5.11131 5.13990 5.20997 5.32514 5.35655 5.46447 5.51895 5.55743 5.64253 5.68570 5.78787 5.87290 5.90514 6.07346 6.15027 6.17387 6.23083 6.30002 6.46805 6.54190 6.83099 7.30710 7.55335 7.61502 8.00134 8.10386 8.30501 9.42220 9.95824 10.30285 11.35583 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038128 B = 0.003218 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.188389 B = 8697.787855 C = 9036.027379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.131 3.869 4 H 0.113 0.887 5 N -0.711 5.711 6 C 0.513 3.487 7 C -0.171 4.171 8 O -0.544 6.544 9 C 0.522 3.478 10 O -0.544 6.544 11 N -0.605 5.605 12 C 0.093 3.907 13 C -0.156 4.156 14 C 0.172 3.828 15 H 0.068 0.932 16 N -0.715 5.715 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.099 3.901 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.410 0.590 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.072 0.928 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.324 -2.488 13.019 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.022 3.978 4 H 0.131 0.869 5 N -0.366 5.366 6 C 0.300 3.700 7 C -0.231 4.231 8 O -0.421 6.421 9 C 0.309 3.691 10 O -0.422 6.422 11 N -0.338 5.338 12 C -0.030 4.030 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.086 0.914 16 N -0.355 5.355 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.024 4.024 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.427 -2.325 12.755 21.721 hybrid contribution 0.989 -0.103 -0.393 1.069 sum -16.438 -2.429 12.362 20.711 Atomic orbital electron populations 1.21786 0.94020 1.00916 1.03155 1.22063 0.97697 0.94161 1.03669 1.20789 0.91554 0.95703 0.89711 0.86948 1.45855 1.17081 1.57496 1.16129 1.20759 0.81071 0.77820 0.90357 1.21870 1.04150 1.02231 0.94851 1.90734 1.51320 1.58960 1.41100 1.20159 0.89619 0.78108 0.81175 1.90687 1.65265 1.46210 1.40046 1.48386 1.08707 1.56565 1.20146 1.22586 0.96466 0.97204 0.86720 1.23601 0.96767 1.03212 0.96139 1.21189 0.88320 0.96302 0.88175 0.91401 1.42379 1.36987 1.13088 1.43074 1.19263 1.11300 0.95242 1.11900 0.90851 1.24786 0.99315 0.96244 1.00303 1.69676 1.32697 1.11193 1.44087 0.86096 0.79693 0.78960 0.81256 1.20455 1.21786 1.21772 1.22407 0.79079 1.02046 0.98848 0.93110 0.92515 0.91895 0.89654 0.91322 0.75333 0.88723 0.88840 0.90128 0.91044 0.90967 0.90545 0.90308 0.77931 0.93357 0.90972 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.51 37.15 0.32 -1.09 16 2 C -0.14 -1.36 5.46 -26.74 -0.15 -1.51 16 3 C 0.13 1.54 2.02 -69.08 -0.14 1.40 16 4 H 0.11 1.41 7.29 -51.93 -0.38 1.04 16 5 N -0.71 -7.53 4.90 -54.93 -0.27 -7.80 16 6 C 0.51 5.38 6.51 -10.99 -0.07 5.31 16 7 C -0.17 -1.10 10.30 36.00 0.37 -0.73 16 8 O -0.54 -7.49 14.24 5.56 0.08 -7.41 16 9 C 0.52 7.62 7.28 -10.98 -0.08 7.54 16 10 O -0.54 -9.49 16.16 5.56 0.09 -9.40 16 11 N -0.60 -8.80 3.32 -170.52 -0.57 -9.36 16 12 C 0.09 1.14 5.13 -2.53 -0.01 1.13 16 13 C -0.16 -2.40 6.77 -24.58 -0.17 -2.57 16 14 C 0.17 3.15 3.61 -66.10 -0.24 2.91 16 15 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 16 N -0.72 -17.01 5.22 -51.65 -0.27 -17.28 16 17 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 21 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 C 0.10 1.69 6.62 -3.07 -0.02 1.67 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.61 5.65 -51.93 -0.29 0.32 16 28 H 0.06 0.69 7.85 -51.92 -0.41 0.28 16 29 H 0.09 0.79 4.87 -51.93 -0.25 0.53 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.41 4.00 7.79 -40.82 -0.32 3.68 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.74 6.98 -51.93 -0.36 0.37 16 36 H 0.07 0.77 7.41 -51.93 -0.38 0.39 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.39 9.95 7.56 -40.82 -0.31 9.64 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 1.37 7.72 -51.93 -0.40 0.97 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -32.11 337.95 -7.03 -39.14 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.45 Total: 9.98 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.43 Total: 7.04 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.38 Total: -61.10 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.17 Total: -16.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.11 -7.03 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185806738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.453 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds