Wall clock time and date at job start Tue Mar 31 2020 02:56:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.46719 * 2 1
4 4 C 1.52999 * 109.47124 * 120.00187 * 2 1 3
5 5 C 1.50701 * 109.47098 * 295.00297 * 4 2 1
6 6 N 1.34773 * 120.00196 * 180.02562 * 5 4 2
7 7 O 1.21283 * 120.00258 * 359.97438 * 5 4 2
8 8 C 1.50698 * 109.46811 * 239.99935 * 2 1 3
9 9 O 1.21277 * 120.00319 * 274.04111 * 8 2 1
10 10 N 1.34781 * 119.99636 * 94.04678 * 8 2 1
11 11 C 1.47017 * 125.65092 * 4.61714 * 10 8 2
12 12 C 1.54334 * 107.26691 * 178.85413 * 11 10 8
13 13 C 1.55152 * 103.01824 * 338.14274 * 12 11 10
14 14 H 1.09006 * 111.03826 * 277.21410 * 13 12 11
15 15 N 1.46505 * 111.00313 * 153.38193 * 13 12 11
16 16 C 1.46494 * 119.99882 * 307.80191 * 15 13 12
17 17 C 1.36944 * 119.99937 * 127.80207 * 15 13 12
18 18 H 1.07997 * 119.99620 * 24.31396 * 17 15 13
19 19 C 1.38806 * 119.99704 * 204.30859 * 17 15 13
20 20 N 1.31619 * 120.00550 * 9.93791 * 19 17 15
21 21 Si 1.86804 * 119.99685 * 189.93997 * 19 17 15
22 22 H 1.48493 * 109.47244 * 0.02562 * 21 19 17
23 23 H 1.48499 * 109.47007 * 120.00219 * 21 19 17
24 24 H 1.48500 * 109.47037 * 239.99781 * 21 19 17
25 25 C 1.47419 * 125.64421 * 184.93347 * 10 8 2
26 26 H 1.09000 * 109.47138 * 55.73839 * 1 2 3
27 27 H 1.08993 * 109.46953 * 295.73326 * 1 2 3
28 28 H 1.09005 * 109.46565 * 175.73875 * 1 2 3
29 29 H 1.09005 * 109.47139 * 55.00034 * 4 2 1
30 30 H 1.08997 * 109.47456 * 175.00206 * 4 2 1
31 31 H 0.97004 * 120.00125 * 359.97438 * 6 5 4
32 32 H 0.97003 * 120.00310 * 179.97438 * 6 5 4
33 33 H 1.09005 * 109.88396 * 298.40383 * 11 10 8
34 34 H 1.09003 * 109.87770 * 59.56387 * 11 10 8
35 35 H 1.09003 * 110.84677 * 219.67837 * 12 11 10
36 36 H 1.09000 * 110.66824 * 96.52767 * 12 11 10
37 37 H 1.09003 * 109.47036 * 86.04323 * 16 15 13
38 38 H 1.08999 * 109.47425 * 206.03857 * 16 15 13
39 39 H 1.09000 * 109.47526 * 326.04405 * 16 15 13
40 40 H 0.97001 * 120.00467 * 179.97438 * 20 19 17
41 41 H 1.09002 * 110.37395 * 322.92422 * 25 10 8
42 42 H 1.09004 * 110.37326 * 85.13976 * 25 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 1.6413 0.0569 2.4766
6 7 1.9853 -0.3915 3.7001
7 8 1.0117 1.0873 2.3633
8 6 2.0323 -0.7104 -1.2305
9 8 2.1647 -1.9159 -1.2232
10 7 2.3346 -0.0060 -2.3391
11 6 2.3131 1.4594 -2.4556
12 6 2.7567 1.8114 -3.8912
13 6 3.5398 0.5476 -4.3348
14 1 4.5671 0.5761 -3.9713
15 7 3.5053 0.3927 -5.7912
16 6 2.2235 0.4162 -6.5002
17 6 4.6712 0.2260 -6.4899
18 1 5.5433 -0.1774 -5.9967
19 6 4.7321 0.5753 -7.8319
20 7 3.7416 1.2438 -8.3836
21 14 6.2200 0.0966 -8.8550
22 1 7.1868 -0.6447 -8.0060
23 1 5.7880 -0.7677 -9.9826
24 1 6.8676 1.3212 -9.3899
25 6 2.7351 -0.5776 -3.6375
26 1 -0.3633 0.5785 -0.8493
27 1 -0.3633 0.4462 0.9257
28 1 -0.3633 -1.0249 -0.0764
29 1 1.6054 -1.7199 1.2951
30 1 3.1264 -0.7995 1.2056
31 1 2.4892 -1.2154 3.7907
32 1 1.7290 0.1096 4.4901
33 1 1.3042 1.8309 -2.2756
34 1 3.0056 1.8985 -1.7374
35 1 3.4054 2.6874 -3.8930
36 1 1.8905 1.9733 -4.5328
37 1 1.9512 1.4476 -6.7243
38 1 2.3119 -0.1463 -7.4296
39 1 1.4537 -0.0349 -5.8742
40 1 3.7843 1.4882 -9.3214
41 1 3.3629 -1.4561 -3.4880
42 1 1.8548 -0.8371 -4.2257
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001191734338.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:56:31
Heat of formation + Delta-G solvation = -54.902485 kcal
Electronic energy + Delta-G solvation = -22837.189350 eV
Core-core repulsion = 19431.715479 eV
Total energy + Delta-G solvation = -3405.473871 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.36953 -39.39202 -37.49338 -34.81735 -34.16209 -33.96643 -31.58743 -29.74610
-28.31802 -27.75198 -26.06521 -24.62690 -22.77524 -22.21628 -20.63497 -19.30753
-18.67378 -17.79058 -17.28352 -17.02485 -16.42109 -15.86801 -15.56015 -14.89255
-14.69717 -14.35601 -13.89195 -13.62431 -13.31607 -13.25802 -12.93705 -12.55633
-12.46761 -12.29409 -12.06505 -11.83798 -11.39437 -11.32273 -11.14298 -10.94009
-10.78433 -10.49391 -10.43844 -10.22886 -10.19272 -9.98995 -9.92871 -9.85121
-9.49266 -8.58530 -8.32446 -6.80071 -5.79934 -3.26590 2.36811 2.77215
3.03259 3.35347 3.42180 3.44250 3.46743 4.39886 4.44813 4.66416
4.79566 4.89740 5.05198 5.24669 5.32087 5.37087 5.46401 5.50420
5.55919 5.59468 5.77711 5.81388 5.93406 5.94344 6.04126 6.16580
6.31037 6.40544 6.46990 6.56384 6.64901 6.81879 6.88563 6.99275
7.34959 7.66308 7.77245 7.79982 7.97052 8.33240 8.37503 9.17796
9.79227 10.28568 11.26345
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.038308 B = 0.003267 C = 0.003203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.746831 B = 8568.617990 C = 8739.539697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.090 4.090
3 H 0.097 0.903
4 C -0.127 4.127
5 C 0.520 3.480
6 N -0.858 5.858
7 O -0.540 6.540
8 C 0.530 3.470
9 O -0.551 6.551
10 N -0.610 5.610
11 C 0.101 3.899
12 C -0.151 4.151
13 C 0.173 3.827
14 H 0.078 0.922
15 N -0.585 5.585
16 C 0.160 3.840
17 C -0.259 4.259
18 H 0.070 0.930
19 C 0.004 3.996
20 N -0.906 5.906
21 Si 0.907 3.093
22 H -0.277 1.277
23 H -0.289 1.289
24 H -0.290 1.290
25 C 0.084 3.916
26 H 0.059 0.941
27 H 0.083 0.917
28 H 0.056 0.944
29 H 0.106 0.894
30 H 0.098 0.902
31 H 0.402 0.598
32 H 0.400 0.600
33 H 0.063 0.937
34 H 0.064 0.936
35 H 0.076 0.924
36 H 0.077 0.923
37 H 0.020 0.980
38 H 0.060 0.940
39 H -0.004 1.004
40 H 0.253 0.747
41 H 0.072 0.928
42 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.269 -1.539 20.251 20.753
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.112 4.112
3 H 0.115 0.885
4 C -0.168 4.168
5 C 0.305 3.695
6 N -0.422 5.422
7 O -0.416 6.416
8 C 0.318 3.682
9 O -0.429 6.429
10 N -0.343 5.343
11 C -0.022 4.022
12 C -0.191 4.191
13 C 0.062 3.938
14 H 0.096 0.904
15 N -0.306 5.306
16 C 0.015 3.985
17 C -0.388 4.388
18 H 0.088 0.912
19 C -0.194 4.194
20 N -0.551 5.551
21 Si 0.737 3.263
22 H -0.202 1.202
23 H -0.216 1.216
24 H -0.217 1.217
25 C -0.041 4.041
26 H 0.079 0.921
27 H 0.102 0.898
28 H 0.075 0.925
29 H 0.125 0.875
30 H 0.116 0.884
31 H 0.231 0.769
32 H 0.231 0.769
33 H 0.081 0.919
34 H 0.082 0.918
35 H 0.095 0.905
36 H 0.095 0.905
37 H 0.038 0.962
38 H 0.079 0.921
39 H 0.015 0.985
40 H 0.063 0.937
41 H 0.090 0.910
42 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -4.626 -1.528 19.802 20.392
hybrid contribution 0.899 -0.281 -0.269 0.979
sum -3.727 -1.809 19.533 19.968
Atomic orbital electron populations
1.21815 0.92080 1.02372 1.03860 1.20961 0.98504 1.00608 0.91128
0.88487 1.21507 1.03428 1.00654 0.91193 1.20681 0.78294 0.85279
0.85232 1.43897 1.60331 1.29647 1.08293 1.90727 1.39652 1.24536
1.86721 1.20177 0.77350 0.87140 0.83550 1.90670 1.54319 1.14305
1.83628 1.48502 1.66493 1.07833 1.11486 1.22095 1.00761 0.80210
0.99142 1.23187 1.01797 1.00926 0.93197 1.21419 0.96645 0.90099
0.85634 0.90413 1.43817 1.03932 1.83472 0.99334 1.20811 0.84126
0.98840 0.94697 1.19285 0.90591 1.36014 0.92934 0.91232 1.25066
0.97816 0.98280 0.98261 1.70067 1.31959 1.40784 1.12263 0.86141
0.82159 0.77734 0.80238 1.20238 1.21563 1.21654 1.23006 0.99838
0.99011 0.82227 0.92143 0.89831 0.92459 0.87535 0.88405 0.76941
0.76925 0.91877 0.91788 0.90485 0.90475 0.96167 0.92114 0.98547
0.93666 0.90973 0.91409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.67 8.96 37.16 0.33 -1.34 16
2 C -0.09 -1.09 2.06 -91.77 -0.19 -1.28 16
3 H 0.10 1.15 6.77 -51.93 -0.35 0.80 16
4 C -0.13 -1.23 4.74 -27.88 -0.13 -1.37 16
5 C 0.52 4.93 7.78 -10.99 -0.09 4.85 16
6 N -0.86 -4.76 8.87 31.22 0.28 -4.49 16
7 O -0.54 -7.06 14.82 5.55 0.08 -6.98 16
8 C 0.53 8.23 6.85 -10.98 -0.08 8.16 16
9 O -0.55 -10.21 16.59 5.56 0.09 -10.12 16
10 N -0.61 -9.76 3.33 -170.52 -0.57 -10.33 16
11 C 0.10 1.41 6.01 -3.06 -0.02 1.39 16
12 C -0.15 -2.53 6.50 -24.89 -0.16 -2.69 16
13 C 0.17 3.43 3.55 -65.78 -0.23 3.19 16
14 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16
15 N -0.59 -14.21 2.96 -171.03 -0.51 -14.72 16
16 C 0.16 3.82 7.71 59.84 0.46 4.29 16
17 C -0.26 -6.94 9.61 -15.06 -0.14 -7.08 16
18 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16
19 C 0.00 0.12 5.10 -17.43 -0.09 0.03 16
20 N -0.91 -25.78 10.67 55.49 0.59 -25.19 16
21 Si 0.91 21.49 29.57 -169.99 -5.03 16.46 16
22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16
23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
25 C 0.08 1.55 6.51 -2.53 -0.02 1.54 16
26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
27 H 0.08 0.98 5.89 -51.93 -0.31 0.68 16
28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
29 H 0.11 0.99 8.02 -51.93 -0.42 0.57 16
30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16
31 H 0.40 1.16 8.83 -40.82 -0.36 0.80 16
32 H 0.40 1.83 8.93 -40.82 -0.36 1.47 16
33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
34 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16
35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
36 H 0.08 1.38 6.91 -51.93 -0.36 1.02 16
37 H 0.02 0.51 7.62 -51.93 -0.40 0.11 16
38 H 0.06 1.60 6.72 -51.93 -0.35 1.25 16
39 H 0.00 -0.08 6.37 -51.93 -0.33 -0.41 16
40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16
41 H 0.07 1.42 7.99 -51.93 -0.42 1.00 16
42 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16
LS Contribution 336.64 15.07 5.07 5.07
Total: -1.00 -32.81 336.64 -6.80 -39.61
By element:
Atomic # 1 Polarization: 7.45 SS G_CDS: -6.46 Total: 0.99 kcal
Atomic # 6 Polarization: 10.03 SS G_CDS: -0.35 Total: 9.68 kcal
Atomic # 7 Polarization: -54.52 SS G_CDS: -0.20 Total: -54.72 kcal
Atomic # 8 Polarization: -17.27 SS G_CDS: 0.17 Total: -17.09 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -32.81 -6.80 -39.61 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191734338.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.293 kcal
(2) G-P(sol) polarization free energy of solvation -32.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.107 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.902 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds