Wall clock time and date at job start Tue Mar 31 2020 02:56:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.46719 * 2 1
4 4 C 1.52999 * 109.47124 * 120.00187 * 2 1 3
5 5 C 1.50701 * 109.47098 * 295.00297 * 4 2 1
6 6 N 1.34773 * 120.00196 * 180.02562 * 5 4 2
7 7 O 1.21283 * 120.00258 * 359.97438 * 5 4 2
8 8 C 1.50698 * 109.46811 * 239.99935 * 2 1 3
9 9 O 1.21277 * 120.00319 * 274.04111 * 8 2 1
10 10 N 1.34781 * 119.99636 * 94.04678 * 8 2 1
11 11 C 1.47017 * 125.65092 * 4.61714 * 10 8 2
12 12 C 1.54334 * 107.26691 * 178.85413 * 11 10 8
13 13 C 1.55152 * 103.01824 * 338.14274 * 12 11 10
14 14 H 1.09006 * 111.03826 * 277.21410 * 13 12 11
15 15 N 1.46505 * 111.00313 * 153.38193 * 13 12 11
16 16 C 1.46494 * 119.99882 * 307.80191 * 15 13 12
17 17 C 1.36944 * 119.99937 * 127.80207 * 15 13 12
18 18 H 1.07997 * 119.99620 * 24.31396 * 17 15 13
19 19 C 1.38806 * 119.99704 * 204.30859 * 17 15 13
20 20 N 1.31619 * 120.00550 * 9.93791 * 19 17 15
21 21 Si 1.86804 * 119.99685 * 189.93997 * 19 17 15
22 22 H 1.48493 * 109.47244 * 0.02562 * 21 19 17
23 23 H 1.48499 * 109.47007 * 120.00219 * 21 19 17
24 24 H 1.48500 * 109.47037 * 239.99781 * 21 19 17
25 25 C 1.47419 * 125.64421 * 184.93347 * 10 8 2
26 26 H 1.09000 * 109.47138 * 55.73839 * 1 2 3
27 27 H 1.08993 * 109.46953 * 295.73326 * 1 2 3
28 28 H 1.09005 * 109.46565 * 175.73875 * 1 2 3
29 29 H 1.09005 * 109.47139 * 55.00034 * 4 2 1
30 30 H 1.08997 * 109.47456 * 175.00206 * 4 2 1
31 31 H 0.97004 * 120.00125 * 359.97438 * 6 5 4
32 32 H 0.97003 * 120.00310 * 179.97438 * 6 5 4
33 33 H 1.09005 * 109.88396 * 298.40383 * 11 10 8
34 34 H 1.09003 * 109.87770 * 59.56387 * 11 10 8
35 35 H 1.09003 * 110.84677 * 219.67837 * 12 11 10
36 36 H 1.09000 * 110.66824 * 96.52767 * 12 11 10
37 37 H 1.09003 * 109.47036 * 86.04323 * 16 15 13
38 38 H 1.08999 * 109.47425 * 206.03857 * 16 15 13
39 39 H 1.09000 * 109.47526 * 326.04405 * 16 15 13
40 40 H 0.97001 * 120.00467 * 179.97438 * 20 19 17
41 41 H 1.09002 * 110.37395 * 322.92422 * 25 10 8
42 42 H 1.09004 * 110.37326 * 85.13976 * 25 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 1.6413 0.0569 2.4766
6 7 1.9853 -0.3915 3.7001
7 8 1.0117 1.0873 2.3633
8 6 2.0323 -0.7104 -1.2305
9 8 2.1647 -1.9159 -1.2232
10 7 2.3346 -0.0060 -2.3391
11 6 2.3131 1.4594 -2.4556
12 6 2.7567 1.8114 -3.8912
13 6 3.5398 0.5476 -4.3348
14 1 4.5671 0.5761 -3.9713
15 7 3.5053 0.3927 -5.7912
16 6 2.2235 0.4162 -6.5002
17 6 4.6712 0.2260 -6.4899
18 1 5.5433 -0.1774 -5.9967
19 6 4.7321 0.5753 -7.8319
20 7 3.7416 1.2438 -8.3836
21 14 6.2200 0.0966 -8.8550
22 1 7.1868 -0.6447 -8.0060
23 1 5.7880 -0.7677 -9.9826
24 1 6.8676 1.3212 -9.3899
25 6 2.7351 -0.5776 -3.6375
26 1 -0.3633 0.5785 -0.8493
27 1 -0.3633 0.4462 0.9257
28 1 -0.3633 -1.0249 -0.0764
29 1 1.6054 -1.7199 1.2951
30 1 3.1264 -0.7995 1.2056
31 1 2.4892 -1.2154 3.7907
32 1 1.7290 0.1096 4.4901
33 1 1.3042 1.8309 -2.2756
34 1 3.0056 1.8985 -1.7374
35 1 3.4054 2.6874 -3.8930
36 1 1.8905 1.9733 -4.5328
37 1 1.9512 1.4476 -6.7243
38 1 2.3119 -0.1463 -7.4296
39 1 1.4537 -0.0349 -5.8742
40 1 3.7843 1.4882 -9.3214
41 1 3.3629 -1.4561 -3.4880
42 1 1.8548 -0.8371 -4.2257
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001191734338.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:56:30
Heat of formation + Delta-G solvation = -79.032209 kcal
Electronic energy + Delta-G solvation = -22838.235693 eV
Core-core repulsion = 19431.715479 eV
Total energy + Delta-G solvation = -3406.520214 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.46175 -40.37592 -38.93802 -36.56195 -35.16606 -34.60958 -33.39430 -31.27331
-29.59554 -28.79324 -28.06352 -25.99307 -24.31111 -23.49477 -21.43839 -20.92993
-19.80970 -18.94541 -18.71755 -17.99784 -17.51078 -17.34357 -16.47192 -16.37879
-15.98440 -15.73870 -15.17287 -14.99567 -14.63251 -14.50352 -14.33457 -14.20410
-13.73774 -13.59023 -13.36733 -12.98403 -12.92877 -12.83835 -12.51708 -12.37292
-12.21524 -12.13310 -12.06542 -12.04786 -11.81341 -11.45359 -11.04874 -10.76326
-10.62807 -10.53949 -9.67208 -8.77017 -7.86228 -5.34562 1.47023 1.48979
1.55393 1.58908 1.66248 1.89612 2.50392 2.69335 3.28158 3.47645
3.54097 3.70464 3.89887 3.98893 4.06880 4.18696 4.21291 4.33451
4.39011 4.46366 4.64945 4.67146 4.71241 4.79168 4.90066 4.94010
4.99843 5.02659 5.21543 5.23635 5.26957 5.31817 5.42053 5.62401
5.71027 5.95869 6.32904 6.47510 6.55098 7.09305 7.14013 7.38186
7.83033 8.27845 9.18737
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.038308 B = 0.003267 C = 0.003203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.746831 B = 8568.617990 C = 8739.539697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.083 4.083
3 H 0.105 0.895
4 C -0.125 4.125
5 C 0.522 3.478
6 N -0.838 5.838
7 O -0.579 6.579
8 C 0.530 3.470
9 O -0.583 6.583
10 N -0.612 5.612
11 C 0.108 3.892
12 C -0.141 4.141
13 C 0.166 3.834
14 H 0.074 0.926
15 N -0.602 5.602
16 C 0.178 3.822
17 C -0.267 4.267
18 H 0.071 0.929
19 C -0.048 4.048
20 N -0.935 5.935
21 Si 0.970 3.030
22 H -0.267 1.267
23 H -0.292 1.292
24 H -0.290 1.290
25 C 0.096 3.904
26 H 0.060 0.940
27 H 0.085 0.915
28 H 0.053 0.947
29 H 0.111 0.889
30 H 0.109 0.891
31 H 0.417 0.583
32 H 0.409 0.591
33 H 0.086 0.914
34 H 0.091 0.909
35 H 0.083 0.917
36 H 0.065 0.935
37 H 0.002 0.998
38 H 0.030 0.970
39 H 0.020 0.980
40 H 0.249 0.751
41 H 0.056 0.944
42 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.913 -1.389 22.436 22.817
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.105 4.105
3 H 0.123 0.877
4 C -0.165 4.165
5 C 0.308 3.692
6 N -0.402 5.402
7 O -0.459 6.459
8 C 0.320 3.680
9 O -0.464 6.464
10 N -0.345 5.345
11 C -0.014 4.014
12 C -0.181 4.181
13 C 0.057 3.943
14 H 0.093 0.907
15 N -0.323 5.323
16 C 0.033 3.967
17 C -0.397 4.397
18 H 0.088 0.912
19 C -0.243 4.243
20 N -0.582 5.582
21 Si 0.798 3.202
22 H -0.192 1.192
23 H -0.219 1.219
24 H -0.217 1.217
25 C -0.029 4.029
26 H 0.079 0.921
27 H 0.104 0.896
28 H 0.072 0.928
29 H 0.129 0.871
30 H 0.127 0.873
31 H 0.248 0.752
32 H 0.240 0.760
33 H 0.104 0.896
34 H 0.109 0.891
35 H 0.102 0.898
36 H 0.084 0.916
37 H 0.021 0.979
38 H 0.049 0.951
39 H 0.039 0.961
40 H 0.059 0.941
41 H 0.074 0.926
42 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.253 -1.396 22.067 22.517
hybrid contribution 0.788 -0.388 -0.857 1.227
sum -3.466 -1.784 21.210 21.565
Atomic orbital electron populations
1.21772 0.91686 1.02186 1.03960 1.20954 0.98642 1.00725 0.90141
0.87698 1.21483 1.04116 1.00551 0.90372 1.20574 0.77943 0.84674
0.86038 1.43716 1.59136 1.29935 1.07384 1.90717 1.41676 1.26189
1.87303 1.20819 0.76345 0.86827 0.84024 1.90655 1.55598 1.15926
1.84206 1.48565 1.66523 1.08720 1.10674 1.22174 1.02788 0.78850
0.97591 1.23031 1.00861 0.99402 0.94822 1.21536 0.97303 0.92203
0.83274 0.90735 1.43969 1.03236 1.84010 1.01102 1.20505 0.84901
0.97363 0.93926 1.19581 0.91324 1.35301 0.93482 0.91170 1.25785
1.00409 0.98776 0.99361 1.70212 1.33664 1.42128 1.12164 0.85165
0.79324 0.77176 0.78522 1.19178 1.21912 1.21720 1.22613 0.98735
0.98000 0.83542 0.92086 0.89641 0.92791 0.87083 0.87281 0.75170
0.75975 0.89603 0.89110 0.89799 0.91645 0.97931 0.95132 0.96143
0.94132 0.92552 0.92645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.95 8.96 71.98 0.64 -2.31 16
2 C -0.08 -1.81 2.06 -11.54 -0.02 -1.83 16
3 H 0.10 2.16 6.77 -2.39 -0.02 2.14 16
4 C -0.12 -2.12 4.74 29.85 0.14 -1.98 16
5 C 0.52 8.64 7.78 87.66 0.68 9.32 16
6 N -0.84 -6.97 8.87 -173.53 -1.54 -8.51 16
7 O -0.58 -13.95 14.82 -3.04 -0.05 -14.00 16
8 C 0.53 15.56 6.85 87.66 0.60 16.16 16
9 O -0.58 -21.04 16.59 -3.02 -0.05 -21.09 16
10 N -0.61 -18.53 3.33 -811.78 -2.70 -21.23 16
11 C 0.11 2.71 6.01 86.73 0.52 3.23 16
12 C -0.14 -4.52 6.50 31.78 0.21 -4.32 16
13 C 0.17 6.51 3.55 46.38 0.16 6.67 16
14 H 0.07 2.95 7.96 -2.38 -0.02 2.93 16
15 N -0.60 -29.49 2.96 -695.03 -2.06 -31.54 16
16 C 0.18 8.68 7.71 127.77 0.99 9.66 16
17 C -0.27 -14.41 9.61 84.03 0.81 -13.60 16
18 H 0.07 3.70 7.85 -2.91 -0.02 3.67 16
19 C -0.05 -2.64 5.10 84.86 0.43 -2.21 16
20 N -0.94 -54.27 10.67 21.65 0.23 -54.04 16
21 Si 0.97 44.53 29.57 68.60 2.03 46.56 16
22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
24 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16
25 C 0.10 3.54 6.51 86.86 0.57 4.11 16
26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
27 H 0.08 1.85 5.89 -2.39 -0.01 1.83 16
28 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16
29 H 0.11 1.81 8.02 -2.38 -0.02 1.79 16
30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16
31 H 0.42 1.13 8.83 -92.71 -0.82 0.31 16
32 H 0.41 2.63 8.93 -92.71 -0.83 1.81 16
33 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16
34 H 0.09 1.86 7.90 -2.39 -0.02 1.84 16
35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16
36 H 0.06 2.27 6.91 -2.39 -0.02 2.25 16
37 H 0.00 0.12 7.62 -2.39 -0.02 0.11 16
38 H 0.03 1.64 6.72 -2.39 -0.02 1.62 16
39 H 0.02 0.88 6.37 -2.39 -0.02 0.86 16
40 H 0.25 14.05 8.31 -92.71 -0.77 13.27 16
41 H 0.06 2.23 7.99 -2.39 -0.02 2.21 16
42 H 0.06 2.17 6.34 -2.38 -0.02 2.15 16
Total: -1.00 -71.09 336.64 0.99 -70.10
By element:
Atomic # 1 Polarization: 11.46 SS G_CDS: -0.60 Total: 10.86 kcal
Atomic # 6 Polarization: 17.17 SS G_CDS: 5.73 Total: 22.90 kcal
Atomic # 7 Polarization: -109.26 SS G_CDS: -6.06 Total: -115.32 kcal
Atomic # 8 Polarization: -35.00 SS G_CDS: -0.10 Total: -35.09 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal
Total: -71.09 0.99 -70.10 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191734338.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.934 kcal
(2) G-P(sol) polarization free energy of solvation -71.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds