Wall clock time and date at job start Tue Mar 31 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 119.99852 * 2 1 4 4 N 1.34778 * 120.00291 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99819 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.47361 * 34.99986 * 5 4 2 7 7 C 1.53001 * 109.47470 * 275.00109 * 5 4 2 8 8 C 1.50698 * 109.46852 * 154.99981 * 5 4 2 9 9 O 1.21280 * 120.00482 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99838 * 180.02562 * 8 5 4 11 11 C 1.46501 * 120.00089 * 180.02562 * 10 8 5 12 12 H 1.09004 * 110.89017 * 37.42144 * 11 10 8 13 13 C 1.54917 * 111.00303 * 273.54569 * 11 10 8 14 14 N 1.47421 * 104.83049 * 204.87799 * 13 11 10 15 15 C 1.36939 * 125.64596 * 204.09087 * 14 13 11 16 16 H 1.08001 * 119.99895 * 163.19156 * 15 14 13 17 17 C 1.38813 * 119.99784 * 343.18642 * 15 14 13 18 18 N 1.31614 * 120.00052 * 331.97054 * 17 15 14 19 19 Si 1.86804 * 119.99545 * 151.97110 * 17 15 14 20 20 H 1.48502 * 109.47053 * 269.99759 * 19 17 15 21 21 H 1.48498 * 109.47532 * 30.00140 * 19 17 15 22 22 H 1.48506 * 109.46755 * 150.00175 * 19 17 15 23 23 C 1.47023 * 108.70467 * 24.35070 * 14 13 11 24 24 C 1.54328 * 107.26445 * 358.59038 * 23 14 13 25 25 H 1.08998 * 110.52030 * 96.45561 * 24 23 14 26 26 C 1.53008 * 110.84757 * 219.66919 * 24 23 14 27 27 H 1.09005 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47432 * 300.00356 * 1 2 3 29 29 H 1.08997 * 109.47260 * 60.00351 * 1 2 3 30 30 H 0.96996 * 119.99570 * 359.97438 * 4 2 1 31 31 H 1.09005 * 109.46728 * 300.00265 * 7 5 4 32 32 H 1.08997 * 109.46836 * 59.99869 * 7 5 4 33 33 H 1.08999 * 109.47127 * 180.02562 * 7 5 4 34 34 H 0.96995 * 120.00137 * 359.97438 * 10 8 5 35 35 H 1.08998 * 110.36765 * 86.03394 * 13 11 10 36 36 H 1.09003 * 110.36420 * 323.71274 * 13 11 10 37 37 H 0.96996 * 120.00198 * 353.96158 * 18 17 15 38 38 H 1.09003 * 109.87723 * 118.13568 * 23 14 13 39 39 H 1.08998 * 109.88584 * 239.29324 * 23 14 13 40 40 H 1.08997 * 109.47048 * 173.69184 * 26 24 23 41 41 H 1.08995 * 109.47257 * 293.69439 * 26 24 23 42 42 H 1.09004 * 109.46914 * 53.69389 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0090 -0.3251 0.5905 7 6 4.1565 -1.0416 -1.4357 8 6 4.1480 -2.4546 0.6020 9 8 3.3599 -3.2902 0.9911 10 7 5.4731 -2.6775 0.7072 11 6 5.9613 -3.9293 1.2909 12 1 5.3288 -4.7674 0.9980 13 6 6.0607 -3.8213 2.8331 14 7 7.0787 -4.8164 3.2162 15 6 7.1873 -5.4154 4.4428 16 1 7.7766 -6.3134 4.5550 17 6 6.5399 -4.8682 5.5421 18 7 6.3026 -3.5745 5.5894 19 14 6.0054 -5.9682 6.9542 20 1 4.6283 -6.4633 6.7021 21 1 6.9343 -7.1218 7.0620 22 1 6.0289 -5.1937 8.2211 23 6 7.9619 -5.0545 2.0652 24 6 7.4408 -4.1862 0.9006 25 1 7.9937 -3.2485 0.8460 26 6 7.5270 -4.9450 -0.4253 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6959 -2.0072 0.0013 31 1 3.7934 -1.8836 -2.0251 32 1 3.7933 -0.1103 -1.8703 33 1 5.2465 -1.0420 -1.4353 34 1 6.1035 -2.0093 0.3957 35 1 5.1024 -4.0626 3.2928 36 1 6.3804 -2.8205 3.1234 37 1 6.6561 -2.9910 4.8999 38 1 8.9832 -4.7676 2.3161 39 1 7.9290 -6.1071 1.7841 40 1 7.0524 -4.3578 -1.2114 41 1 8.5732 -5.1143 -0.6797 42 1 7.0167 -5.9034 -0.3292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205858995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:42 Heat of formation + Delta-G solvation = -59.053920 kcal Electronic energy + Delta-G solvation = -23022.210331 eV Core-core repulsion = 19616.556441 eV Total energy + Delta-G solvation = -3405.653891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43227 -39.26662 -37.81269 -35.03181 -34.27330 -32.97556 -31.57902 -30.38512 -29.13178 -27.84236 -25.54789 -24.79338 -23.39293 -20.98956 -20.47064 -20.28061 -19.70328 -17.81482 -17.49972 -16.80083 -16.17347 -15.65771 -15.40938 -14.86733 -14.52937 -14.15202 -13.78148 -13.69645 -13.39986 -13.24434 -13.07277 -12.88776 -12.71988 -12.54045 -12.49476 -12.26102 -11.83402 -11.75419 -11.56938 -10.89671 -10.73482 -10.65649 -10.46691 -10.13764 -10.08312 -10.00072 -9.80661 -9.59125 -9.29111 -8.76668 -8.39776 -6.95277 -6.09448 -3.14981 2.44819 2.66332 2.81424 3.40368 3.52857 3.56753 3.71742 4.50565 4.60519 4.69599 4.84308 4.90417 4.98806 5.01303 5.15442 5.21322 5.22773 5.32037 5.35461 5.52962 5.61878 5.64279 5.74993 5.81388 5.87617 5.93650 6.01404 6.17667 6.19657 6.26072 6.51029 6.57106 6.76555 6.94185 7.05141 7.35406 7.57467 7.79707 8.05370 8.25252 8.48723 9.01297 9.81318 10.34942 11.22842 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.004554 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.546061 B = 6146.545446 C = 7392.094155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.514 3.486 3 O -0.551 6.551 4 N -0.711 5.711 5 C 0.122 3.878 6 H 0.114 0.886 7 C -0.157 4.157 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.709 5.709 11 C 0.130 3.870 12 H 0.095 0.905 13 C 0.141 3.859 14 N -0.601 5.601 15 C -0.340 4.340 16 H 0.067 0.933 17 C -0.023 4.023 18 N -0.914 5.914 19 Si 1.067 2.933 20 H -0.292 1.292 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.110 4.110 25 H 0.076 0.924 26 C -0.137 4.137 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.411 0.589 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.398 0.602 35 H 0.055 0.945 36 H 0.027 0.973 37 H 0.268 0.732 38 H 0.026 0.974 39 H 0.030 0.970 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 4.313 -16.474 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.429 6.429 4 N -0.365 5.365 5 C 0.013 3.987 6 H 0.132 0.868 7 C -0.215 4.215 8 C 0.295 3.705 9 O -0.409 6.409 10 N -0.359 5.359 11 C 0.025 3.975 12 H 0.113 0.887 13 C 0.014 3.986 14 N -0.328 5.328 15 C -0.468 4.468 16 H 0.085 0.915 17 C -0.225 4.225 18 N -0.555 5.555 19 Si 0.897 3.103 20 H -0.220 1.220 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.015 3.985 24 C -0.129 4.129 25 H 0.095 0.905 26 C -0.195 4.195 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.248 0.752 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.575 4.344 -14.631 16.618 hybrid contribution 1.056 -0.050 -1.500 1.835 sum -5.519 4.294 -16.131 17.581 Atomic orbital electron populations 1.21829 0.91293 1.04485 1.05294 1.20835 0.90745 0.83158 0.75115 1.90719 1.70727 1.31387 1.50086 1.45909 1.05828 1.09769 1.75038 1.20778 0.82267 0.97283 0.98363 0.86808 1.22110 1.01653 1.03308 0.94451 1.20470 0.83037 0.88181 0.78831 1.90722 1.55097 1.46394 1.48679 1.45841 1.06385 1.21041 1.62664 1.22438 0.94129 0.85437 0.95545 0.88743 1.21803 0.93948 0.93267 0.89583 1.44437 1.29094 1.49873 1.09439 1.19759 1.35204 1.06943 0.84865 0.91546 1.25767 0.99878 0.97686 0.99189 1.70754 1.47300 1.02603 1.34795 0.83495 0.76463 0.74627 0.75749 1.21987 1.21812 1.21606 1.21386 0.93928 0.96394 0.86824 1.22426 0.95115 0.99691 0.95715 0.90548 1.21737 1.01512 1.00265 0.95951 0.90352 0.88526 0.88737 0.75194 0.91774 0.90905 0.90934 0.76729 0.92633 0.95532 0.92073 0.95623 0.95222 0.92968 0.92580 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.39 36.00 0.37 -0.91 16 2 C 0.51 6.10 7.90 -10.99 -0.09 6.01 16 3 O -0.55 -8.61 16.76 5.56 0.09 -8.51 16 4 N -0.71 -8.27 4.95 -54.93 -0.27 -8.54 16 5 C 0.12 1.48 2.98 -69.08 -0.21 1.27 16 6 H 0.11 1.48 7.58 -51.93 -0.39 1.08 16 7 C -0.16 -1.46 9.38 37.16 0.35 -1.11 16 8 C 0.51 7.68 7.22 -10.99 -0.08 7.60 16 9 O -0.53 -10.01 15.58 5.56 0.09 -9.92 16 10 N -0.71 -10.13 5.12 -51.73 -0.27 -10.40 16 11 C 0.13 2.32 2.77 -65.78 -0.18 2.13 16 12 H 0.09 1.84 7.63 -51.93 -0.40 1.44 16 13 C 0.14 3.35 4.99 -2.53 -0.01 3.34 16 14 N -0.60 -15.41 3.29 -170.06 -0.56 -15.97 16 15 C -0.34 -9.78 10.02 -15.06 -0.15 -9.94 16 16 H 0.07 1.90 7.97 -52.49 -0.42 1.48 16 17 C -0.02 -0.68 5.09 -17.43 -0.09 -0.76 16 18 N -0.91 -28.30 12.93 55.49 0.72 -27.58 16 19 Si 1.07 26.08 30.00 -169.99 -5.10 20.98 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C 0.14 2.87 6.85 -3.06 -0.02 2.85 16 24 C -0.11 -1.73 3.16 -88.78 -0.28 -2.01 16 25 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 26 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 27 H 0.08 0.45 7.91 -51.93 -0.41 0.04 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.41 4.44 7.63 -40.82 -0.31 4.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 34 H 0.40 4.46 7.93 -40.82 -0.32 4.13 16 35 H 0.06 1.54 7.95 -51.93 -0.41 1.13 16 36 H 0.03 0.68 6.81 -51.93 -0.35 0.32 16 37 H 0.27 8.31 6.06 -40.82 -0.25 8.06 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.60 7.77 -51.93 -0.40 0.19 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -35.98 345.75 -6.79 -42.77 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.65 Total: 4.86 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.04 Total: 7.11 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.38 Total: -62.49 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.10 Total: 20.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.98 -6.79 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205858995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.288 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds