Wall clock time and date at job start Tue Mar 31 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 119.99852 * 2 1 4 4 N 1.34778 * 120.00291 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99819 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.47361 * 34.99986 * 5 4 2 7 7 C 1.53001 * 109.47470 * 275.00109 * 5 4 2 8 8 C 1.50698 * 109.46852 * 154.99981 * 5 4 2 9 9 O 1.21280 * 120.00482 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99838 * 180.02562 * 8 5 4 11 11 C 1.46501 * 120.00089 * 180.02562 * 10 8 5 12 12 H 1.09004 * 110.89017 * 37.42144 * 11 10 8 13 13 C 1.54917 * 111.00303 * 273.54569 * 11 10 8 14 14 N 1.47421 * 104.83049 * 204.87799 * 13 11 10 15 15 C 1.36939 * 125.64596 * 204.09087 * 14 13 11 16 16 H 1.08001 * 119.99895 * 163.19156 * 15 14 13 17 17 C 1.38813 * 119.99784 * 343.18642 * 15 14 13 18 18 N 1.31614 * 120.00052 * 331.97054 * 17 15 14 19 19 Si 1.86804 * 119.99545 * 151.97110 * 17 15 14 20 20 H 1.48502 * 109.47053 * 269.99759 * 19 17 15 21 21 H 1.48498 * 109.47532 * 30.00140 * 19 17 15 22 22 H 1.48506 * 109.46755 * 150.00175 * 19 17 15 23 23 C 1.47023 * 108.70467 * 24.35070 * 14 13 11 24 24 C 1.54328 * 107.26445 * 358.59038 * 23 14 13 25 25 H 1.08998 * 110.52030 * 96.45561 * 24 23 14 26 26 C 1.53008 * 110.84757 * 219.66919 * 24 23 14 27 27 H 1.09005 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47432 * 300.00356 * 1 2 3 29 29 H 1.08997 * 109.47260 * 60.00351 * 1 2 3 30 30 H 0.96996 * 119.99570 * 359.97438 * 4 2 1 31 31 H 1.09005 * 109.46728 * 300.00265 * 7 5 4 32 32 H 1.08997 * 109.46836 * 59.99869 * 7 5 4 33 33 H 1.08999 * 109.47127 * 180.02562 * 7 5 4 34 34 H 0.96995 * 120.00137 * 359.97438 * 10 8 5 35 35 H 1.08998 * 110.36765 * 86.03394 * 13 11 10 36 36 H 1.09003 * 110.36420 * 323.71274 * 13 11 10 37 37 H 0.96996 * 120.00198 * 353.96158 * 18 17 15 38 38 H 1.09003 * 109.87723 * 118.13568 * 23 14 13 39 39 H 1.08998 * 109.88584 * 239.29324 * 23 14 13 40 40 H 1.08997 * 109.47048 * 173.69184 * 26 24 23 41 41 H 1.08995 * 109.47257 * 293.69439 * 26 24 23 42 42 H 1.09004 * 109.46914 * 53.69389 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0090 -0.3251 0.5905 7 6 4.1565 -1.0416 -1.4357 8 6 4.1480 -2.4546 0.6020 9 8 3.3599 -3.2902 0.9911 10 7 5.4731 -2.6775 0.7072 11 6 5.9613 -3.9293 1.2909 12 1 5.3288 -4.7674 0.9980 13 6 6.0607 -3.8213 2.8331 14 7 7.0787 -4.8164 3.2162 15 6 7.1873 -5.4154 4.4428 16 1 7.7766 -6.3134 4.5550 17 6 6.5399 -4.8682 5.5421 18 7 6.3026 -3.5745 5.5894 19 14 6.0054 -5.9682 6.9542 20 1 4.6283 -6.4633 6.7021 21 1 6.9343 -7.1218 7.0620 22 1 6.0289 -5.1937 8.2211 23 6 7.9619 -5.0545 2.0652 24 6 7.4408 -4.1862 0.9006 25 1 7.9937 -3.2485 0.8460 26 6 7.5270 -4.9450 -0.4253 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6959 -2.0072 0.0013 31 1 3.7934 -1.8836 -2.0251 32 1 3.7933 -0.1103 -1.8703 33 1 5.2465 -1.0420 -1.4353 34 1 6.1035 -2.0093 0.3957 35 1 5.1024 -4.0626 3.2928 36 1 6.3804 -2.8205 3.1234 37 1 6.6561 -2.9910 4.8999 38 1 8.9832 -4.7676 2.3161 39 1 7.9290 -6.1071 1.7841 40 1 7.0524 -4.3578 -1.2114 41 1 8.5732 -5.1143 -0.6797 42 1 7.0167 -5.9034 -0.3292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205858995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:42 Heat of formation + Delta-G solvation = -87.025812 kcal Electronic energy + Delta-G solvation = -23023.423284 eV Core-core repulsion = 19616.556441 eV Total energy + Delta-G solvation = -3406.866843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61219 -40.45752 -39.33856 -36.10347 -35.94410 -34.56362 -32.53973 -32.14391 -30.06469 -29.32267 -27.25019 -26.05456 -24.88502 -22.52340 -21.74524 -21.55302 -21.07108 -19.64840 -18.81323 -17.96923 -17.41541 -16.84279 -16.43648 -16.40641 -15.98049 -15.73933 -15.50700 -15.03578 -14.64645 -14.55790 -14.47336 -14.09112 -13.86016 -13.51222 -13.37648 -13.27601 -13.06429 -12.97505 -12.71902 -12.66925 -12.54894 -12.19764 -12.09011 -11.90294 -11.63582 -11.61209 -11.12359 -11.01379 -10.57456 -10.33218 -10.17865 -9.08330 -8.38713 -5.40673 1.37996 1.52749 1.54174 1.61392 1.76006 1.78461 2.35101 2.60368 3.13851 3.36210 3.47164 3.63377 3.83848 3.86137 3.93111 4.01264 4.08061 4.28573 4.43926 4.46784 4.51506 4.61776 4.65012 4.75657 4.78840 4.90476 4.94816 4.98081 5.02924 5.05040 5.13598 5.16554 5.27975 5.33309 5.46395 5.62769 6.24672 6.37404 6.45110 6.83154 7.05351 7.13913 7.63855 8.21521 8.92994 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.004554 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.546061 B = 6146.545446 C = 7392.094155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.509 3.491 3 O -0.593 6.593 4 N -0.711 5.711 5 C 0.126 3.874 6 H 0.105 0.895 7 C -0.147 4.147 8 C 0.511 3.489 9 O -0.573 6.573 10 N -0.695 5.695 11 C 0.150 3.850 12 H 0.081 0.919 13 C 0.150 3.850 14 N -0.625 5.625 15 C -0.349 4.349 16 H 0.065 0.935 17 C -0.079 4.079 18 N -0.945 5.945 19 Si 1.116 2.884 20 H -0.289 1.289 21 H -0.265 1.265 22 H -0.291 1.291 23 C 0.131 3.869 24 C -0.091 4.091 25 H 0.098 0.902 26 C -0.129 4.129 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.415 0.585 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.418 0.582 35 H 0.002 0.998 36 H 0.007 0.993 37 H 0.253 0.747 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 3.956 -18.692 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.298 3.702 3 O -0.474 6.474 4 N -0.365 5.365 5 C 0.018 3.982 6 H 0.123 0.877 7 C -0.206 4.206 8 C 0.297 3.703 9 O -0.451 6.451 10 N -0.347 5.347 11 C 0.043 3.957 12 H 0.099 0.901 13 C 0.022 3.978 14 N -0.353 5.353 15 C -0.477 4.477 16 H 0.083 0.917 17 C -0.275 4.275 18 N -0.587 5.587 19 Si 0.940 3.060 20 H -0.216 1.216 21 H -0.190 1.190 22 H -0.218 1.218 23 C 0.007 3.993 24 C -0.110 4.110 25 H 0.116 0.884 26 C -0.186 4.186 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.255 0.745 35 H 0.020 0.980 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.331 3.979 -16.906 18.486 hybrid contribution 1.017 0.042 -0.810 1.301 sum -5.314 4.020 -17.716 18.928 Atomic orbital electron populations 1.21879 0.87830 1.06219 1.06307 1.21611 0.92398 0.82312 0.73835 1.90696 1.71907 1.32696 1.52142 1.46021 1.05721 1.10139 1.74646 1.20786 0.82836 0.94663 0.99964 0.87681 1.22078 1.03019 1.03516 0.91970 1.21037 0.82748 0.88640 0.77892 1.90708 1.56119 1.48018 1.50302 1.45634 1.06780 1.20402 1.61902 1.21968 0.95879 0.86556 0.91276 0.90052 1.21621 0.90862 0.91647 0.93626 1.44713 1.30905 1.49796 1.09862 1.20068 1.34495 1.06791 0.86386 0.91738 1.27186 1.00142 0.98092 1.02067 1.70874 1.49272 1.03543 1.35051 0.82853 0.76636 0.73741 0.72751 1.21613 1.18977 1.21769 1.21647 0.93177 0.97776 0.86745 1.22375 0.92663 1.00283 0.95686 0.88377 1.21701 1.03199 0.99653 0.94081 0.88305 0.88086 0.86969 0.74666 0.90965 0.91039 0.88715 0.74458 0.97997 0.97565 0.93621 0.95701 0.94637 0.90407 0.90456 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.39 71.24 0.74 -1.44 16 2 C 0.51 11.67 7.90 87.66 0.69 12.36 16 3 O -0.59 -18.38 16.76 -3.03 -0.05 -18.44 16 4 N -0.71 -16.02 4.95 -446.10 -2.21 -18.23 16 5 C 0.13 2.95 2.98 44.25 0.13 3.08 16 6 H 0.11 2.69 7.58 -2.38 -0.02 2.67 16 7 C -0.15 -2.39 9.38 71.98 0.68 -1.71 16 8 C 0.51 15.12 7.22 87.66 0.63 15.75 16 9 O -0.57 -21.81 15.58 -3.03 -0.05 -21.86 16 10 N -0.70 -19.04 5.12 -435.95 -2.23 -21.28 16 11 C 0.15 5.28 2.77 46.38 0.13 5.41 16 12 H 0.08 3.15 7.63 -2.38 -0.02 3.13 16 13 C 0.15 7.40 4.99 86.86 0.43 7.83 16 14 N -0.63 -32.80 3.29 -691.96 -2.28 -35.08 16 15 C -0.35 -20.53 10.02 84.03 0.84 -19.69 16 16 H 0.06 3.73 7.97 -2.91 -0.02 3.70 16 17 C -0.08 -4.74 5.09 84.86 0.43 -4.30 16 18 N -0.94 -60.80 12.93 21.65 0.28 -60.52 16 19 Si 1.12 53.52 30.00 68.60 2.06 55.57 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 C 0.13 5.26 6.85 86.73 0.59 5.85 16 24 C -0.09 -2.65 3.16 -9.60 -0.03 -2.68 16 25 H 0.10 2.48 8.00 -2.39 -0.02 2.46 16 26 C -0.13 -2.71 9.16 71.98 0.66 -2.05 16 27 H 0.10 0.91 7.91 -2.38 -0.02 0.89 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.42 8.67 7.63 -92.71 -0.71 7.96 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.10 7.56 -2.39 -0.02 1.09 16 34 H 0.42 8.30 7.93 -92.71 -0.74 7.56 16 35 H 0.00 0.09 7.95 -2.39 -0.02 0.07 16 36 H 0.01 0.35 6.81 -2.39 -0.02 0.33 16 37 H 0.25 16.53 6.06 -92.71 -0.56 15.96 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.38 7.77 -2.39 -0.02 1.37 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 1.15 8.07 -2.38 -0.02 1.14 16 Total: -1.00 -82.88 345.75 1.24 -81.64 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -0.21 Total: 19.77 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 5.93 Total: 18.42 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -6.44 Total: -135.11 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.10 Total: -40.29 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 2.06 Total: 55.57 kcal Total: -82.88 1.24 -81.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205858995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.391 kcal (2) G-P(sol) polarization free energy of solvation -82.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds