Wall clock time and date at job start Tue Mar 31 2020 02:50:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21282 * 119.99784 * 2 1
4 4 N 1.34774 * 120.00246 * 179.97438 * 2 1 3
5 5 C 1.46503 * 119.99897 * 0.02562 * 4 2 1
6 6 C 1.46493 * 120.00454 * 180.02562 * 4 2 1
7 7 C 1.50705 * 109.47354 * 270.00826 * 6 4 2
8 8 O 1.21278 * 119.99736 * 359.97438 * 7 6 4
9 9 N 1.34774 * 120.00145 * 179.97438 * 7 6 4
10 10 C 1.46498 * 120.00292 * 179.97438 * 9 7 6
11 11 H 1.09006 * 110.88244 * 31.12519 * 10 9 7
12 12 C 1.54910 * 111.00861 * 267.20041 * 10 9 7
13 13 N 1.47421 * 104.83119 * 204.91239 * 12 10 9
14 14 C 1.36940 * 125.64997 * 204.16967 * 13 12 10
15 15 H 1.07995 * 119.99770 * 161.46727 * 14 13 12
16 16 C 1.38814 * 119.99778 * 341.46808 * 14 13 12
17 17 N 1.31618 * 119.99806 * 157.63994 * 16 14 13
18 18 Si 1.86796 * 119.99976 * 337.64128 * 16 14 13
19 19 H 1.48496 * 109.47601 * 84.53442 * 18 16 14
20 20 H 1.48508 * 109.47075 * 204.53535 * 18 16 14
21 21 H 1.48501 * 109.47156 * 324.53209 * 18 16 14
22 22 C 1.47020 * 108.70287 * 24.13040 * 13 12 10
23 23 C 1.54325 * 107.27280 * 358.93533 * 22 13 12
24 24 H 1.08999 * 110.71745 * 96.17238 * 23 22 13
25 25 C 1.53002 * 110.87528 * 219.37498 * 23 22 13
26 26 H 1.08998 * 109.47408 * 270.00240 * 1 2 3
27 27 H 1.08997 * 109.47217 * 30.00266 * 1 2 3
28 28 H 1.09005 * 109.47001 * 150.00316 * 1 2 3
29 29 H 1.09001 * 109.47264 * 89.99182 * 5 4 2
30 30 H 1.09000 * 109.47392 * 209.99444 * 5 4 2
31 31 H 1.08999 * 109.47087 * 329.99356 * 5 4 2
32 32 H 1.09005 * 109.46864 * 30.00353 * 6 4 2
33 33 H 1.08997 * 109.47440 * 150.00455 * 6 4 2
34 34 H 0.97004 * 119.99906 * 359.97438 * 9 7 6
35 35 H 1.09001 * 110.35998 * 323.75325 * 12 10 9
36 36 H 1.08996 * 110.36505 * 86.07213 * 12 10 9
37 37 H 0.97004 * 119.99475 * 180.02562 * 17 16 14
38 38 H 1.09003 * 109.88224 * 239.52132 * 22 13 12
39 39 H 1.08996 * 109.88661 * 118.35613 * 22 13 12
40 40 H 1.08996 * 109.47344 * 173.61134 * 25 23 22
41 41 H 1.09006 * 109.46981 * 293.61275 * 25 23 22
42 42 H 1.09006 * 109.46744 * 53.60993 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1133 1.0504 0.0000
4 7 2.1809 -1.1672 0.0005
5 6 1.4484 -2.4359 0.0005
6 6 3.6458 -1.1672 0.0011
7 6 4.1488 -1.1673 -1.4196
8 8 3.3610 -1.1679 -2.3417
9 7 5.4739 -1.1669 -1.6653
10 6 5.9629 -1.1676 -3.0463
11 1 5.2705 -0.6419 -3.7039
12 6 6.2155 -2.6122 -3.5452
13 7 7.2234 -2.4721 -4.6120
14 6 7.4241 -3.3531 -5.6410
15 1 7.9597 -3.0384 -6.5244
16 6 6.9390 -4.6504 -5.5486
17 7 6.7270 -5.3531 -6.6411
18 14 6.5872 -5.3989 -3.8737
19 1 5.2276 -5.0002 -3.4290
20 1 6.6632 -6.8791 -3.9671
21 1 7.5911 -4.9126 -2.8934
22 6 7.9768 -1.2296 -4.3885
23 6 7.3856 -0.5548 -3.1328
24 1 7.9692 -0.8085 -2.2478
25 6 7.3114 0.9627 -3.3132
26 1 -0.3634 0.0000 1.0276
27 1 -0.3633 0.8899 -0.5139
28 1 -0.3633 -0.8901 -0.5138
29 1 1.2670 -2.7508 -1.0271
30 1 2.0373 -3.1955 0.5147
31 1 0.4959 -2.3055 0.5141
32 1 4.0090 -0.2771 0.5149
33 1 4.0090 -2.0571 0.5152
34 1 6.1040 -1.1661 -0.9277
35 1 6.6032 -3.2307 -2.7357
36 1 5.2969 -3.0414 -3.9452
37 1 6.3877 -6.2595 -6.5765
38 1 7.8680 -0.5702 -5.2496
39 1 9.0298 -1.4587 -4.2252
40 1 6.7890 1.4044 -2.4647
41 1 8.3203 1.3715 -3.3715
42 1 6.7723 1.1934 -4.2320
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001206096078.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:50:46
Heat of formation + Delta-G solvation = -37.909246 kcal
Electronic energy + Delta-G solvation = -23208.295142 eV
Core-core repulsion = 19803.558153 eV
Total energy + Delta-G solvation = -3404.736989 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.39169 -39.26615 -37.75920 -35.56117 -34.08763 -32.73036 -31.02984 -30.96273
-28.76971 -27.55499 -26.19672 -26.02929 -23.37370 -21.27737 -20.54290 -20.00960
-19.25973 -17.31229 -17.25849 -16.92219 -16.59391 -15.83339 -15.43622 -15.15473
-14.65082 -14.17878 -13.85476 -13.52254 -13.39535 -13.23530 -13.10418 -13.02119
-12.95684 -12.61266 -12.30742 -12.20834 -12.03055 -11.84724 -11.80685 -11.26982
-11.14351 -10.66521 -10.44697 -10.30641 -10.09035 -10.00239 -9.97247 -9.46758
-8.85090 -8.81513 -8.60928 -7.04830 -5.94376 -3.24708 2.37362 2.70747
2.74308 3.34562 3.40612 3.44904 3.47984 4.38897 4.55167 4.71132
4.79309 4.88197 4.93054 5.02900 5.05946 5.12912 5.16049 5.19228
5.22099 5.25662 5.52019 5.52920 5.62684 5.75182 5.78149 5.89099
6.00973 6.07733 6.16405 6.30751 6.44143 6.54607 6.63125 6.77466
6.82806 7.10373 7.62191 7.70984 7.96304 8.31712 8.35815 8.83429
9.69123 10.16846 11.21785
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.018596 B = 0.005000 C = 0.004238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1505.320963 B = 5599.154394 C = 6605.522923
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.518 3.482
3 O -0.545 6.545
4 N -0.601 5.601
5 C 0.077 3.923
6 C 0.095 3.905
7 C 0.495 3.505
8 O -0.527 6.527
9 N -0.718 5.718
10 C 0.134 3.866
11 H 0.101 0.899
12 C 0.107 3.893
13 N -0.607 5.607
14 C -0.243 4.243
15 H 0.094 0.906
16 C 0.023 3.977
17 N -0.907 5.907
18 Si 0.883 3.117
19 H -0.286 1.286
20 H -0.302 1.302
21 H -0.278 1.278
22 C 0.141 3.859
23 C -0.111 4.111
24 H 0.077 0.923
25 C -0.138 4.138
26 H 0.092 0.908
27 H 0.093 0.907
28 H 0.084 0.916
29 H 0.064 0.936
30 H 0.073 0.927
31 H 0.076 0.924
32 H 0.113 0.887
33 H 0.107 0.893
34 H 0.398 0.602
35 H 0.026 0.974
36 H 0.061 0.939
37 H 0.263 0.737
38 H 0.038 0.962
39 H 0.034 0.966
40 H 0.052 0.948
41 H 0.056 0.944
42 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.096 8.570 18.128 21.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.307 3.693
3 O -0.422 6.422
4 N -0.335 5.335
5 C -0.066 4.066
6 C -0.032 4.032
7 C 0.279 3.721
8 O -0.403 6.403
9 N -0.369 5.369
10 C 0.029 3.971
11 H 0.119 0.881
12 C -0.020 4.020
13 N -0.334 5.334
14 C -0.370 4.370
15 H 0.111 0.889
16 C -0.175 4.175
17 N -0.550 5.550
18 Si 0.713 3.287
19 H -0.213 1.213
20 H -0.230 1.230
21 H -0.204 1.204
22 C 0.015 3.985
23 C -0.131 4.131
24 H 0.096 0.904
25 C -0.195 4.195
26 H 0.111 0.889
27 H 0.112 0.888
28 H 0.102 0.898
29 H 0.083 0.917
30 H 0.091 0.909
31 H 0.095 0.905
32 H 0.131 0.869
33 H 0.125 0.875
34 H 0.231 0.769
35 H 0.044 0.956
36 H 0.080 0.920
37 H 0.073 0.927
38 H 0.056 0.944
39 H 0.052 0.948
40 H 0.071 0.929
41 H 0.075 0.925
42 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.403 8.910 17.285 21.184
hybrid contribution 0.205 -0.846 1.208 1.489
sum -8.197 8.065 18.493 21.777
Atomic orbital electron populations
1.21920 0.91448 1.05279 1.04455 1.20816 0.90784 0.82819 0.74845
1.90709 1.70750 1.31105 1.49668 1.47440 1.05244 1.07091 1.73679
1.21909 0.96999 0.84749 1.02904 1.21323 0.81627 1.05483 0.94737
1.21115 0.82681 0.76361 0.91954 1.90717 1.55209 1.48389 1.45948
1.45909 1.06703 1.75348 1.08972 1.22332 0.94995 0.97894 0.81891
0.88079 1.22245 0.93905 0.94020 0.91827 1.44654 1.35837 1.23621
1.29295 1.18651 1.34663 0.90134 0.93513 0.88858 1.24988 0.99504
0.96332 0.96720 1.69848 1.47134 1.11435 1.26624 0.86959 0.78085
0.77424 0.86211 1.21283 1.23014 1.20383 1.21418 0.94860 0.88342
0.93845 1.22459 0.95372 0.95490 0.99746 0.90436 1.21733 1.01563
0.94364 1.01869 0.88914 0.88843 0.89765 0.91693 0.90859 0.90506
0.86927 0.87479 0.76870 0.95628 0.92048 0.92705 0.94391 0.94794
0.92875 0.92489 0.92276
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.38 9.29 36.00 0.33 -1.04 16
2 C 0.52 6.52 7.78 -10.99 -0.09 6.44 16
3 O -0.55 -9.06 16.68 5.56 0.09 -8.96 16
4 N -0.60 -6.78 2.36 -182.96 -0.43 -7.21 16
5 C 0.08 0.62 9.89 59.85 0.59 1.21 16
6 C 0.10 1.06 5.93 -5.19 -0.03 1.02 16
7 C 0.49 7.69 7.90 -10.98 -0.09 7.61 16
8 O -0.53 -10.63 16.07 5.56 0.09 -10.54 16
9 N -0.72 -10.40 5.20 -51.73 -0.27 -10.67 16
10 C 0.13 2.42 2.87 -65.79 -0.19 2.23 16
11 H 0.10 2.05 7.45 -51.93 -0.39 1.66 16
12 C 0.11 2.41 4.39 -2.53 -0.01 2.40 16
13 N -0.61 -15.03 3.21 -170.08 -0.55 -15.57 16
14 C -0.24 -7.04 10.57 -15.06 -0.16 -7.20 16
15 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16
16 C 0.02 0.69 5.43 -17.43 -0.09 0.60 16
17 N -0.91 -28.50 13.97 55.49 0.78 -27.72 16
18 Si 0.88 23.05 24.27 -169.99 -4.13 18.93 16
19 H -0.29 -7.36 6.49 56.52 0.37 -6.99 16
20 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16
21 H -0.28 -7.05 6.66 56.52 0.38 -6.68 16
22 C 0.14 2.78 6.84 -3.06 -0.02 2.76 16
23 C -0.11 -1.74 3.19 -88.79 -0.28 -2.02 16
24 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16
25 C -0.14 -1.81 9.17 37.16 0.34 -1.47 16
26 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16
27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
28 H 0.08 0.55 6.63 -51.93 -0.34 0.21 16
29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16
31 H 0.08 0.40 6.53 -51.93 -0.34 0.06 16
32 H 0.11 1.17 7.42 -51.93 -0.39 0.79 16
33 H 0.11 0.82 7.89 -51.93 -0.41 0.41 16
34 H 0.40 4.28 8.57 -40.82 -0.35 3.93 16
35 H 0.03 0.59 5.58 -51.93 -0.29 0.30 16
36 H 0.06 1.58 6.63 -51.93 -0.34 1.24 16
37 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16
38 H 0.04 0.74 7.78 -51.93 -0.40 0.34 16
39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16
40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
42 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16
LS Contribution 338.92 15.07 5.11 5.11
Total: -1.00 -38.30 338.92 -5.65 -43.95
By element:
Atomic # 1 Polarization: 6.81 SS G_CDS: -6.65 Total: 0.16 kcal
Atomic # 6 Polarization: 12.23 SS G_CDS: 0.31 Total: 12.54 kcal
Atomic # 7 Polarization: -60.71 SS G_CDS: -0.47 Total: -61.18 kcal
Atomic # 8 Polarization: -19.68 SS G_CDS: 0.18 Total: -19.50 kcal
Atomic # 14 Polarization: 23.05 SS G_CDS: -4.13 Total: 18.93 kcal
Total LS contribution 5.11 Total: 5.11 kcal
Total: -38.30 -5.65 -43.95 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001206096078.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.041 kcal
(2) G-P(sol) polarization free energy of solvation -38.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.256 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.909 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds