Wall clock time and date at job start Tue Mar 31 2020 02:50:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21282 * 119.99784 * 2 1
4 4 N 1.34774 * 120.00246 * 179.97438 * 2 1 3
5 5 C 1.46503 * 119.99897 * 0.02562 * 4 2 1
6 6 C 1.46493 * 120.00454 * 180.02562 * 4 2 1
7 7 C 1.50705 * 109.47354 * 270.00826 * 6 4 2
8 8 O 1.21278 * 119.99736 * 359.97438 * 7 6 4
9 9 N 1.34774 * 120.00145 * 179.97438 * 7 6 4
10 10 C 1.46498 * 120.00292 * 179.97438 * 9 7 6
11 11 H 1.09006 * 110.88244 * 31.12519 * 10 9 7
12 12 C 1.54910 * 111.00861 * 267.20041 * 10 9 7
13 13 N 1.47421 * 104.83119 * 204.91239 * 12 10 9
14 14 C 1.36940 * 125.64997 * 204.16967 * 13 12 10
15 15 H 1.07995 * 119.99770 * 161.46727 * 14 13 12
16 16 C 1.38814 * 119.99778 * 341.46808 * 14 13 12
17 17 N 1.31618 * 119.99806 * 157.63994 * 16 14 13
18 18 Si 1.86796 * 119.99976 * 337.64128 * 16 14 13
19 19 H 1.48496 * 109.47601 * 84.53442 * 18 16 14
20 20 H 1.48508 * 109.47075 * 204.53535 * 18 16 14
21 21 H 1.48501 * 109.47156 * 324.53209 * 18 16 14
22 22 C 1.47020 * 108.70287 * 24.13040 * 13 12 10
23 23 C 1.54325 * 107.27280 * 358.93533 * 22 13 12
24 24 H 1.08999 * 110.71745 * 96.17238 * 23 22 13
25 25 C 1.53002 * 110.87528 * 219.37498 * 23 22 13
26 26 H 1.08998 * 109.47408 * 270.00240 * 1 2 3
27 27 H 1.08997 * 109.47217 * 30.00266 * 1 2 3
28 28 H 1.09005 * 109.47001 * 150.00316 * 1 2 3
29 29 H 1.09001 * 109.47264 * 89.99182 * 5 4 2
30 30 H 1.09000 * 109.47392 * 209.99444 * 5 4 2
31 31 H 1.08999 * 109.47087 * 329.99356 * 5 4 2
32 32 H 1.09005 * 109.46864 * 30.00353 * 6 4 2
33 33 H 1.08997 * 109.47440 * 150.00455 * 6 4 2
34 34 H 0.97004 * 119.99906 * 359.97438 * 9 7 6
35 35 H 1.09001 * 110.35998 * 323.75325 * 12 10 9
36 36 H 1.08996 * 110.36505 * 86.07213 * 12 10 9
37 37 H 0.97004 * 119.99475 * 180.02562 * 17 16 14
38 38 H 1.09003 * 109.88224 * 239.52132 * 22 13 12
39 39 H 1.08996 * 109.88661 * 118.35613 * 22 13 12
40 40 H 1.08996 * 109.47344 * 173.61134 * 25 23 22
41 41 H 1.09006 * 109.46981 * 293.61275 * 25 23 22
42 42 H 1.09006 * 109.46744 * 53.60993 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1133 1.0504 0.0000
4 7 2.1809 -1.1672 0.0005
5 6 1.4484 -2.4359 0.0005
6 6 3.6458 -1.1672 0.0011
7 6 4.1488 -1.1673 -1.4196
8 8 3.3610 -1.1679 -2.3417
9 7 5.4739 -1.1669 -1.6653
10 6 5.9629 -1.1676 -3.0463
11 1 5.2705 -0.6419 -3.7039
12 6 6.2155 -2.6122 -3.5452
13 7 7.2234 -2.4721 -4.6120
14 6 7.4241 -3.3531 -5.6410
15 1 7.9597 -3.0384 -6.5244
16 6 6.9390 -4.6504 -5.5486
17 7 6.7270 -5.3531 -6.6411
18 14 6.5872 -5.3989 -3.8737
19 1 5.2276 -5.0002 -3.4290
20 1 6.6632 -6.8791 -3.9671
21 1 7.5911 -4.9126 -2.8934
22 6 7.9768 -1.2296 -4.3885
23 6 7.3856 -0.5548 -3.1328
24 1 7.9692 -0.8085 -2.2478
25 6 7.3114 0.9627 -3.3132
26 1 -0.3634 0.0000 1.0276
27 1 -0.3633 0.8899 -0.5139
28 1 -0.3633 -0.8901 -0.5138
29 1 1.2670 -2.7508 -1.0271
30 1 2.0373 -3.1955 0.5147
31 1 0.4959 -2.3055 0.5141
32 1 4.0090 -0.2771 0.5149
33 1 4.0090 -2.0571 0.5152
34 1 6.1040 -1.1661 -0.9277
35 1 6.6032 -3.2307 -2.7357
36 1 5.2969 -3.0414 -3.9452
37 1 6.3877 -6.2595 -6.5765
38 1 7.8680 -0.5702 -5.2496
39 1 9.0298 -1.4587 -4.2252
40 1 6.7890 1.4044 -2.4647
41 1 8.3203 1.3715 -3.3715
42 1 6.7723 1.1934 -4.2320
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001206096078.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:50:46
Heat of formation + Delta-G solvation = -68.341047 kcal
Electronic energy + Delta-G solvation = -23209.614764 eV
Core-core repulsion = 19803.558153 eV
Total energy + Delta-G solvation = -3406.056611 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.48396 -40.48743 -39.23491 -36.51015 -35.72563 -34.42209 -32.87317 -31.81294
-30.02209 -28.64043 -27.81833 -26.96851 -25.00880 -22.94528 -21.90301 -21.35981
-20.24573 -18.99858 -18.44812 -18.15868 -17.79554 -17.08687 -17.01100 -16.30694
-15.97283 -15.84938 -15.19330 -15.14855 -14.68305 -14.50243 -14.28172 -14.07887
-13.94691 -13.66338 -13.61416 -13.32655 -13.26751 -13.13357 -13.01001 -12.83051
-12.65180 -12.30003 -12.17400 -11.90939 -11.64505 -11.52152 -11.26182 -11.00039
-10.89800 -10.13571 -9.78250 -9.12102 -8.23864 -5.50956 1.25006 1.30007
1.40392 1.43461 1.54526 1.89070 2.27470 2.36908 2.99279 3.30526
3.47362 3.66844 3.78512 3.79676 3.94783 4.14602 4.22703 4.29820
4.34724 4.43206 4.45422 4.51897 4.60393 4.64659 4.71055 4.80585
4.90519 4.91464 4.96866 5.04292 5.05406 5.18239 5.30715 5.33965
5.48409 5.62818 6.04724 6.28464 6.49597 6.68914 7.06826 7.21380
7.47282 8.02978 8.95982
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.018596 B = 0.005000 C = 0.004238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1505.320963 B = 5599.154394 C = 6605.522923
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.505 3.495
3 O -0.596 6.596
4 N -0.604 5.604
5 C 0.071 3.929
6 C 0.098 3.902
7 C 0.488 3.512
8 O -0.581 6.581
9 N -0.703 5.703
10 C 0.147 3.853
11 H 0.073 0.927
12 C 0.107 3.893
13 N -0.627 5.627
14 C -0.240 4.240
15 H 0.062 0.938
16 C -0.038 4.038
17 N -0.955 5.955
18 Si 0.949 3.051
19 H -0.284 1.284
20 H -0.302 1.302
21 H -0.258 1.258
22 C 0.133 3.867
23 C -0.092 4.092
24 H 0.111 0.889
25 C -0.131 4.131
26 H 0.123 0.877
27 H 0.087 0.913
28 H 0.099 0.901
29 H 0.041 0.959
30 H 0.094 0.906
31 H 0.109 0.891
32 H 0.123 0.877
33 H 0.150 0.850
34 H 0.420 0.580
35 H 0.035 0.965
36 H 0.020 0.980
37 H 0.263 0.737
38 H 0.034 0.966
39 H 0.045 0.955
40 H 0.067 0.933
41 H 0.081 0.919
42 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.086 9.116 22.070 25.210
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.296 3.704
3 O -0.477 6.477
4 N -0.336 5.336
5 C -0.070 4.070
6 C -0.029 4.029
7 C 0.274 3.726
8 O -0.460 6.460
9 N -0.357 5.357
10 C 0.040 3.960
11 H 0.091 0.909
12 C -0.020 4.020
13 N -0.354 5.354
14 C -0.368 4.368
15 H 0.080 0.920
16 C -0.232 4.232
17 N -0.601 5.601
18 Si 0.778 3.222
19 H -0.211 1.211
20 H -0.230 1.230
21 H -0.183 1.183
22 C 0.008 3.992
23 C -0.111 4.111
24 H 0.129 0.871
25 C -0.189 4.189
26 H 0.141 0.859
27 H 0.106 0.894
28 H 0.118 0.882
29 H 0.060 0.940
30 H 0.113 0.887
31 H 0.127 0.873
32 H 0.141 0.859
33 H 0.168 0.832
34 H 0.258 0.742
35 H 0.052 0.948
36 H 0.038 0.962
37 H 0.072 0.928
38 H 0.052 0.948
39 H 0.063 0.937
40 H 0.086 0.914
41 H 0.100 0.900
42 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -8.365 9.466 21.296 24.761
hybrid contribution 0.196 -0.962 -0.121 0.990
sum -8.169 8.503 21.175 24.237
Atomic orbital electron populations
1.21962 0.88261 1.05752 1.06546 1.21662 0.92561 0.82447 0.73727
1.90675 1.72023 1.32850 1.52132 1.47682 1.05564 1.07880 1.72476
1.22137 0.98803 0.83843 1.02245 1.21504 0.81882 1.07940 0.91548
1.22078 0.82342 0.74691 0.93442 1.90701 1.56546 1.50751 1.48035
1.45728 1.07184 1.74675 1.08072 1.21886 0.96094 0.94545 0.83435
0.90916 1.22243 0.91545 0.97012 0.91168 1.44743 1.37452 1.24242
1.28922 1.18627 1.33202 0.91049 0.93946 0.91977 1.25675 1.00367
0.96977 1.00212 1.69979 1.49430 1.11843 1.28858 0.85896 0.78260
0.76212 0.81874 1.21097 1.23045 1.18328 1.21669 0.95198 0.86396
0.95937 1.22423 0.93267 0.96636 0.98811 0.87118 1.21695 1.03115
0.92279 1.01786 0.85878 0.89448 0.88186 0.93988 0.88709 0.87270
0.85929 0.83229 0.74163 0.94751 0.96178 0.92802 0.94824 0.93699
0.91366 0.90038 0.93809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.31 9.29 71.23 0.66 -1.65 16
2 C 0.50 11.97 7.78 87.66 0.68 12.65 16
3 O -0.60 -19.47 16.68 -3.03 -0.05 -19.52 16
4 N -0.60 -12.22 2.36 -851.14 -2.01 -14.23 16
5 C 0.07 0.95 9.89 127.77 1.26 2.21 16
6 C 0.10 1.88 5.93 85.64 0.51 2.39 16
7 C 0.49 14.39 7.90 87.66 0.69 15.09 16
8 O -0.58 -23.58 16.07 -3.02 -0.05 -23.63 16
9 N -0.70 -18.60 5.20 -435.97 -2.27 -20.87 16
10 C 0.15 5.13 2.87 46.38 0.13 5.26 16
11 H 0.07 2.99 7.45 -2.38 -0.02 2.97 16
12 C 0.11 4.78 4.39 86.86 0.38 5.16 16
13 N -0.63 -31.14 3.21 -692.00 -2.22 -33.36 16
14 C -0.24 -14.34 10.57 84.03 0.89 -13.45 16
15 H 0.06 3.99 8.06 -2.91 -0.02 3.96 16
16 C -0.04 -2.30 5.43 84.86 0.46 -1.84 16
17 N -0.95 -62.19 13.97 21.65 0.30 -61.89 16
18 Si 0.95 48.28 24.27 68.60 1.66 49.94 16
19 H -0.28 -14.25 6.49 99.48 0.65 -13.60 16
20 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16
21 H -0.26 -12.20 6.66 99.48 0.66 -11.54 16
22 C 0.13 5.06 6.84 86.73 0.59 5.66 16
23 C -0.09 -2.62 3.19 -9.61 -0.03 -2.65 16
24 H 0.11 2.49 8.00 -2.39 -0.02 2.47 16
25 C -0.13 -3.05 9.17 71.98 0.66 -2.39 16
26 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16
27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
28 H 0.10 1.06 6.63 -2.38 -0.02 1.04 16
29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16
30 H 0.09 0.86 7.89 -2.39 -0.02 0.84 16
31 H 0.11 0.71 6.53 -2.39 -0.02 0.70 16
32 H 0.12 2.18 7.42 -2.38 -0.02 2.16 16
33 H 0.15 1.58 7.89 -2.39 -0.02 1.56 16
34 H 0.42 7.26 8.57 -92.71 -0.79 6.47 16
35 H 0.04 1.50 5.58 -2.39 -0.01 1.49 16
36 H 0.02 1.05 6.63 -2.39 -0.02 1.04 16
37 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16
38 H 0.03 1.31 7.78 -2.39 -0.02 1.29 16
39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
41 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16
42 H 0.04 1.15 8.07 -2.38 -0.02 1.13 16
Total: -1.00 -89.10 338.92 2.39 -86.71
By element:
Atomic # 1 Polarization: 10.29 SS G_CDS: 0.12 Total: 10.41 kcal
Atomic # 6 Polarization: 19.54 SS G_CDS: 6.89 Total: 26.44 kcal
Atomic # 7 Polarization: -124.16 SS G_CDS: -6.19 Total: -130.35 kcal
Atomic # 8 Polarization: -43.05 SS G_CDS: -0.10 Total: -43.15 kcal
Atomic # 14 Polarization: 48.28 SS G_CDS: 1.66 Total: 49.94 kcal
Total: -89.10 2.39 -86.71 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001206096078.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.371 kcal
(2) G-P(sol) polarization free energy of solvation -89.099 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds