Wall clock time and date at job start Tue Mar 31 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47021 * 2 1 4 4 C 1.53003 * 109.47152 * 240.00145 * 2 1 3 5 5 C 1.50708 * 109.46574 * 64.99841 * 4 2 1 6 6 N 1.34779 * 119.99305 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00293 * 0.02562 * 5 4 2 8 8 C 1.50694 * 109.47501 * 120.00400 * 2 1 3 9 9 O 1.21282 * 120.00278 * 94.32153 * 8 2 1 10 10 N 1.34777 * 119.99910 * 274.32403 * 8 2 1 11 11 C 1.47429 * 125.65081 * 174.71321 * 10 8 2 12 12 C 1.54905 * 104.83404 * 204.16432 * 11 10 8 13 13 H 1.09006 * 111.00490 * 81.06225 * 12 11 10 14 14 C 1.53001 * 111.00346 * 204.91399 * 12 11 10 15 15 C 1.55163 * 101.58078 * 322.99003 * 12 11 10 16 16 H 1.09000 * 110.86613 * 277.06636 * 15 12 11 17 17 N 1.46496 * 110.72040 * 153.86568 * 15 12 11 18 18 C 1.36940 * 120.00217 * 160.02010 * 17 15 12 19 19 H 1.07998 * 119.99346 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00065 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99394 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00189 * 0.27279 * 20 18 17 23 23 H 1.48497 * 109.47377 * 269.72708 * 22 20 18 24 24 H 1.48503 * 109.46949 * 29.73077 * 22 20 18 25 25 H 1.48501 * 109.46879 * 149.72619 * 22 20 18 26 26 C 1.47021 * 125.65070 * 354.75049 * 10 8 2 27 27 H 1.09004 * 109.46806 * 184.80666 * 1 2 3 28 28 H 1.09000 * 109.46657 * 304.80348 * 1 2 3 29 29 H 1.08992 * 109.47471 * 64.80843 * 1 2 3 30 30 H 1.08999 * 109.47500 * 184.99507 * 4 2 1 31 31 H 1.08998 * 109.47133 * 305.00570 * 4 2 1 32 32 H 0.97000 * 120.00293 * 359.97438 * 6 5 4 33 33 H 0.96998 * 119.99529 * 180.02562 * 6 5 4 34 34 H 1.09004 * 110.36259 * 323.00089 * 11 10 8 35 35 H 1.08997 * 110.36866 * 85.20980 * 11 10 8 36 36 H 1.09006 * 109.46911 * 172.19735 * 14 12 11 37 37 H 1.09000 * 109.47296 * 292.19020 * 14 12 11 38 38 H 1.09001 * 109.47037 * 52.19779 * 14 12 11 39 39 H 0.97004 * 120.00113 * 340.02374 * 17 15 12 40 40 H 0.97003 * 119.99592 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.87789 * 59.49116 * 26 10 8 42 42 H 1.08999 * 109.88206 * 298.32817 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7002 7 8 1.0117 1.0875 -2.3632 8 6 2.0324 -0.7104 1.2303 9 8 2.3092 -1.8901 1.1789 10 7 2.1741 -0.0349 2.3879 11 6 2.5475 -0.6243 3.6867 12 6 1.9844 0.3574 4.7443 13 1 0.9213 0.1841 4.9114 14 6 2.7666 0.2587 6.0556 15 6 2.2231 1.7274 4.0560 16 1 3.2454 2.0698 4.2168 17 7 1.2630 2.7236 4.5375 18 6 1.5303 4.0587 4.3914 19 1 2.4488 4.3771 3.9208 20 6 0.6208 5.0026 4.8480 21 7 0.8776 6.2858 4.7071 22 14 -0.9642 4.4519 5.6687 23 1 -2.0259 4.2982 4.6419 24 1 -0.7427 3.1513 6.3503 25 1 -1.3840 5.4684 6.6666 26 6 1.9812 1.4118 2.5650 27 1 -0.3633 -1.0241 0.0861 28 1 -0.3632 0.5866 0.8439 29 1 -0.3634 0.4374 -0.9298 30 1 3.1264 -0.7994 -1.2057 31 1 1.6054 -1.7197 -1.2953 32 1 2.4883 -1.2156 -3.7909 33 1 1.7281 0.1094 -4.4901 34 1 2.0922 -1.6080 3.8017 35 1 3.6317 -0.6966 3.7728 36 1 2.4438 1.0505 6.7317 37 1 2.5812 -0.7112 6.5172 38 1 3.8320 0.3666 5.8521 39 1 0.4379 2.4376 4.9598 40 1 0.2419 6.9455 5.0259 41 1 0.9632 1.6866 2.2884 42 1 2.6953 1.9591 1.9496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215314264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:16 Heat of formation + Delta-G solvation = -70.331841 kcal Electronic energy + Delta-G solvation = -23003.286955 eV Core-core repulsion = 19597.144017 eV Total energy + Delta-G solvation = -3406.142938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37967 -39.42841 -37.74176 -34.22272 -34.15031 -33.87072 -32.42143 -31.04599 -28.10462 -27.88194 -26.55716 -24.09400 -23.28264 -21.35135 -20.50755 -20.19078 -18.72393 -17.75556 -17.51840 -17.17071 -16.34129 -16.04497 -15.51406 -15.20844 -14.64539 -14.25803 -13.94033 -13.65664 -13.36365 -13.24487 -13.09946 -12.89250 -12.58513 -12.35486 -12.24923 -11.91071 -11.75230 -11.46352 -11.24364 -11.17880 -11.03999 -10.78239 -10.64906 -10.35451 -10.09260 -10.03661 -9.89874 -9.66324 -9.56453 -9.02472 -8.39502 -7.40456 -5.84422 -3.22515 2.47446 2.74594 3.02526 3.33095 3.36014 3.41810 3.48394 4.45410 4.52508 4.63630 4.86036 4.89755 5.01169 5.05122 5.06650 5.36879 5.45354 5.51011 5.53843 5.56740 5.67896 5.69047 5.75818 5.84530 5.92659 6.02477 6.09083 6.11148 6.25754 6.29561 6.39855 6.45325 6.50234 6.57171 6.75347 7.08429 7.72262 7.89815 8.07705 8.29104 8.34210 9.10631 9.82869 10.00808 11.33262 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.004757 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.287760 B = 5884.915194 C = 7071.427805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.102 0.898 4 C -0.124 4.124 5 C 0.517 3.483 6 N -0.859 5.859 7 O -0.534 6.534 8 C 0.533 3.467 9 O -0.558 6.558 10 N -0.611 5.611 11 C 0.114 3.886 12 C -0.117 4.117 13 H 0.081 0.919 14 C -0.135 4.135 15 C 0.183 3.817 16 H 0.075 0.925 17 N -0.736 5.736 18 C -0.253 4.253 19 H 0.092 0.908 20 C 0.011 3.989 21 N -0.929 5.929 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.290 1.290 26 C 0.071 3.929 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.401 0.599 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 -16.792 -10.212 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.120 0.880 4 C -0.165 4.165 5 C 0.302 3.698 6 N -0.423 5.423 7 O -0.410 6.410 8 C 0.322 3.678 9 O -0.437 6.437 10 N -0.344 5.344 11 C -0.008 4.008 12 C -0.137 4.137 13 H 0.100 0.900 14 C -0.192 4.192 15 C 0.071 3.929 16 H 0.093 0.907 17 N -0.377 5.377 18 C -0.383 4.383 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C -0.054 4.054 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.229 0.771 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.236 -16.527 -10.050 19.612 hybrid contribution -1.014 -0.351 0.107 1.078 sum 2.222 -16.879 -9.944 19.716 Atomic orbital electron populations 1.21821 0.91982 1.02017 1.04391 1.20957 0.98618 1.00937 0.90794 0.88017 1.21474 1.03317 1.00412 0.91262 1.20697 0.78490 0.85387 0.85232 1.43893 1.60496 1.29600 1.08315 1.90763 1.39292 1.24332 1.86617 1.20240 0.77201 0.86626 0.83733 1.90646 1.51971 1.16098 1.84982 1.48537 1.67592 1.10108 1.08168 1.22243 0.99631 0.97094 0.81876 1.22664 1.00543 0.95782 0.94719 0.90050 1.21625 0.99794 1.01569 0.96248 1.21213 0.94977 0.87680 0.89036 0.90747 1.42705 1.20981 1.02882 1.71175 1.19058 1.05123 0.80159 1.33912 0.88985 1.24664 0.98250 0.95016 1.00611 1.69698 1.36822 0.99362 1.51644 0.86595 0.84897 0.77694 0.79606 1.20952 1.20228 1.21649 1.23307 1.02174 0.78285 1.01659 0.92794 0.91734 0.89740 0.88479 0.87771 0.77078 0.76924 0.91002 0.91467 0.91449 0.93060 0.92491 0.80255 0.92906 0.90578 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.96 37.16 0.33 -1.61 16 2 C -0.09 -1.23 1.93 -91.77 -0.18 -1.40 16 3 H 0.10 1.46 7.10 -51.93 -0.37 1.09 16 4 C -0.12 -1.31 4.63 -27.88 -0.13 -1.44 16 5 C 0.52 5.63 7.78 -10.98 -0.09 5.55 16 6 N -0.86 -5.71 8.87 31.22 0.28 -5.44 16 7 O -0.53 -8.10 14.82 5.56 0.08 -8.02 16 8 C 0.53 8.17 6.94 -10.99 -0.08 8.10 16 9 O -0.56 -9.62 16.50 5.56 0.09 -9.53 16 10 N -0.61 -9.37 3.33 -170.52 -0.57 -9.94 16 11 C 0.11 1.60 6.35 -2.53 -0.02 1.59 16 12 C -0.12 -1.71 3.25 -88.47 -0.29 -2.00 16 13 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 14 C -0.13 -1.74 9.31 37.16 0.35 -1.40 16 15 C 0.18 3.23 3.06 -66.10 -0.20 3.02 16 16 H 0.07 1.35 8.02 -51.93 -0.42 0.93 16 17 N -0.74 -16.14 4.98 -51.66 -0.26 -16.40 16 18 C -0.25 -6.74 10.46 -15.06 -0.16 -6.89 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 20 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 22 Si 0.88 21.36 27.74 -169.99 -4.71 16.65 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.07 1.19 5.84 -3.07 -0.02 1.17 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.92 7.57 -51.93 -0.39 0.52 16 29 H 0.08 1.18 5.88 -51.93 -0.31 0.87 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.01 8.03 -51.93 -0.42 0.60 16 32 H 0.40 1.47 8.83 -40.82 -0.36 1.11 16 33 H 0.40 2.32 8.93 -40.82 -0.36 1.96 16 34 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 35 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.36 7.93 5.57 -40.82 -0.23 7.71 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.08 1.36 7.46 -51.93 -0.39 0.97 16 42 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -33.51 341.46 -6.34 -39.85 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.61 Total: 10.33 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.57 Total: 4.90 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.23 Total: -59.34 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.51 -6.34 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215314264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.477 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds