Wall clock time and date at job start Tue Mar 31 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47021 * 2 1 4 4 C 1.53003 * 109.47152 * 240.00145 * 2 1 3 5 5 C 1.50708 * 109.46574 * 64.99841 * 4 2 1 6 6 N 1.34779 * 119.99305 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00293 * 0.02562 * 5 4 2 8 8 C 1.50694 * 109.47501 * 120.00400 * 2 1 3 9 9 O 1.21282 * 120.00278 * 94.32153 * 8 2 1 10 10 N 1.34777 * 119.99910 * 274.32403 * 8 2 1 11 11 C 1.47429 * 125.65081 * 174.71321 * 10 8 2 12 12 C 1.54905 * 104.83404 * 204.16432 * 11 10 8 13 13 H 1.09006 * 111.00490 * 81.06225 * 12 11 10 14 14 C 1.53001 * 111.00346 * 204.91399 * 12 11 10 15 15 C 1.55163 * 101.58078 * 322.99003 * 12 11 10 16 16 H 1.09000 * 110.86613 * 277.06636 * 15 12 11 17 17 N 1.46496 * 110.72040 * 153.86568 * 15 12 11 18 18 C 1.36940 * 120.00217 * 160.02010 * 17 15 12 19 19 H 1.07998 * 119.99346 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00065 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99394 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00189 * 0.27279 * 20 18 17 23 23 H 1.48497 * 109.47377 * 269.72708 * 22 20 18 24 24 H 1.48503 * 109.46949 * 29.73077 * 22 20 18 25 25 H 1.48501 * 109.46879 * 149.72619 * 22 20 18 26 26 C 1.47021 * 125.65070 * 354.75049 * 10 8 2 27 27 H 1.09004 * 109.46806 * 184.80666 * 1 2 3 28 28 H 1.09000 * 109.46657 * 304.80348 * 1 2 3 29 29 H 1.08992 * 109.47471 * 64.80843 * 1 2 3 30 30 H 1.08999 * 109.47500 * 184.99507 * 4 2 1 31 31 H 1.08998 * 109.47133 * 305.00570 * 4 2 1 32 32 H 0.97000 * 120.00293 * 359.97438 * 6 5 4 33 33 H 0.96998 * 119.99529 * 180.02562 * 6 5 4 34 34 H 1.09004 * 110.36259 * 323.00089 * 11 10 8 35 35 H 1.08997 * 110.36866 * 85.20980 * 11 10 8 36 36 H 1.09006 * 109.46911 * 172.19735 * 14 12 11 37 37 H 1.09000 * 109.47296 * 292.19020 * 14 12 11 38 38 H 1.09001 * 109.47037 * 52.19779 * 14 12 11 39 39 H 0.97004 * 120.00113 * 340.02374 * 17 15 12 40 40 H 0.97003 * 119.99592 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.87789 * 59.49116 * 26 10 8 42 42 H 1.08999 * 109.88206 * 298.32817 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7002 7 8 1.0117 1.0875 -2.3632 8 6 2.0324 -0.7104 1.2303 9 8 2.3092 -1.8901 1.1789 10 7 2.1741 -0.0349 2.3879 11 6 2.5475 -0.6243 3.6867 12 6 1.9844 0.3574 4.7443 13 1 0.9213 0.1841 4.9114 14 6 2.7666 0.2587 6.0556 15 6 2.2231 1.7274 4.0560 16 1 3.2454 2.0698 4.2168 17 7 1.2630 2.7236 4.5375 18 6 1.5303 4.0587 4.3914 19 1 2.4488 4.3771 3.9208 20 6 0.6208 5.0026 4.8480 21 7 0.8776 6.2858 4.7071 22 14 -0.9642 4.4519 5.6687 23 1 -2.0259 4.2982 4.6419 24 1 -0.7427 3.1513 6.3503 25 1 -1.3840 5.4684 6.6666 26 6 1.9812 1.4118 2.5650 27 1 -0.3633 -1.0241 0.0861 28 1 -0.3632 0.5866 0.8439 29 1 -0.3634 0.4374 -0.9298 30 1 3.1264 -0.7994 -1.2057 31 1 1.6054 -1.7197 -1.2953 32 1 2.4883 -1.2156 -3.7909 33 1 1.7281 0.1094 -4.4901 34 1 2.0922 -1.6080 3.8017 35 1 3.6317 -0.6966 3.7728 36 1 2.4438 1.0505 6.7317 37 1 2.5812 -0.7112 6.5172 38 1 3.8320 0.3666 5.8521 39 1 0.4379 2.4376 4.9598 40 1 0.2419 6.9455 5.0259 41 1 0.9632 1.6866 2.2884 42 1 2.6953 1.9591 1.9496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215314264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:16 Heat of formation + Delta-G solvation = -96.334439 kcal Electronic energy + Delta-G solvation = -23004.414513 eV Core-core repulsion = 19597.144017 eV Total energy + Delta-G solvation = -3407.270495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52603 -40.45225 -39.05250 -35.95772 -35.25762 -34.65513 -33.84421 -32.83217 -29.47302 -29.00490 -27.67539 -25.73834 -24.58260 -22.74575 -21.64929 -21.38944 -19.89192 -19.51559 -18.67832 -17.99270 -17.41346 -17.38002 -16.56126 -16.39594 -16.25941 -15.75699 -15.07972 -14.99348 -14.79911 -14.54136 -14.34831 -14.18974 -14.04889 -13.50978 -13.44924 -13.18406 -13.02848 -12.94050 -12.90604 -12.26378 -12.25321 -12.16302 -12.05183 -11.89645 -11.78918 -11.43458 -11.09342 -10.99500 -10.78144 -10.57740 -9.67637 -9.36412 -8.01014 -5.36165 1.39907 1.42727 1.49508 1.51706 1.63650 1.89736 2.49631 2.64948 3.29055 3.32782 3.54391 3.62818 3.82622 3.83254 3.92948 4.12421 4.16439 4.30893 4.34998 4.43537 4.58682 4.62249 4.64263 4.68487 4.85137 4.88912 4.91335 4.97958 5.08632 5.10177 5.21674 5.26410 5.30247 5.48818 5.78683 5.93153 6.22480 6.44936 6.47550 7.04847 7.08416 7.36925 7.81638 8.00254 9.20010 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.004757 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.287760 B = 5884.915194 C = 7071.427805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.087 0.913 4 C -0.118 4.118 5 C 0.517 3.483 6 N -0.836 5.836 7 O -0.584 6.584 8 C 0.536 3.464 9 O -0.572 6.572 10 N -0.612 5.612 11 C 0.116 3.884 12 C -0.105 4.105 13 H 0.081 0.919 14 C -0.131 4.131 15 C 0.174 3.826 16 H 0.070 0.930 17 N -0.737 5.737 18 C -0.231 4.231 19 H 0.062 0.938 20 C -0.057 4.057 21 N -0.981 5.981 22 Si 0.948 3.052 23 H -0.283 1.283 24 H -0.247 1.247 25 H -0.298 1.298 26 C 0.084 3.916 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.419 0.581 33 H 0.408 0.592 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.062 0.938 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -19.754 -10.304 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.106 0.894 4 C -0.158 4.158 5 C 0.302 3.698 6 N -0.400 5.400 7 O -0.464 6.464 8 C 0.325 3.675 9 O -0.453 6.453 10 N -0.345 5.345 11 C -0.006 4.006 12 C -0.125 4.125 13 H 0.100 0.900 14 C -0.189 4.189 15 C 0.064 3.936 16 H 0.088 0.912 17 N -0.379 5.379 18 C -0.362 4.362 19 H 0.080 0.920 20 C -0.249 4.249 21 N -0.631 5.631 22 Si 0.776 3.224 23 H -0.209 1.209 24 H -0.172 1.172 25 H -0.225 1.225 26 C -0.042 4.042 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.250 0.750 33 H 0.239 0.761 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.319 -19.598 -10.178 22.332 hybrid contribution -0.903 0.498 0.039 1.032 sum 2.416 -19.100 -10.139 21.759 Atomic orbital electron populations 1.21743 0.92049 1.02261 1.03480 1.20953 0.98532 1.00380 0.91448 0.89426 1.21444 1.04186 1.00438 0.89772 1.20745 0.77978 0.84708 0.86339 1.43691 1.59180 1.29919 1.07246 1.90753 1.41814 1.26477 1.87353 1.20474 0.76649 0.86393 0.83966 1.90637 1.52732 1.16672 1.85224 1.48552 1.67614 1.09369 1.08939 1.22338 1.00520 0.97036 0.80741 1.22592 1.01012 0.93320 0.95558 0.90043 1.21610 0.99949 1.02411 0.94893 1.21399 0.93730 0.88487 0.89959 0.91212 1.42635 1.21970 1.01816 1.71513 1.19010 1.03414 0.82286 1.31443 0.92015 1.25424 1.02085 0.94973 1.02418 1.69875 1.38336 1.00818 1.54101 0.85517 0.80341 0.78190 0.78397 1.20908 1.17173 1.22537 1.22944 1.01275 0.79350 1.00636 0.91772 0.93087 0.90279 0.87021 0.86388 0.75011 0.76076 0.90110 0.90113 0.93063 0.90517 0.91646 0.79851 0.93395 0.91953 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.96 71.98 0.64 -2.98 16 2 C -0.09 -2.37 1.93 -11.54 -0.02 -2.39 16 3 H 0.09 2.53 7.10 -2.39 -0.02 2.51 16 4 C -0.12 -2.28 4.63 29.85 0.14 -2.14 16 5 C 0.52 10.57 7.78 87.66 0.68 11.25 16 6 N -0.84 -9.30 8.87 -173.53 -1.54 -10.84 16 7 O -0.58 -17.63 14.82 -3.01 -0.04 -17.68 16 8 C 0.54 15.52 6.94 87.66 0.61 16.13 16 9 O -0.57 -18.36 16.50 -3.03 -0.05 -18.41 16 10 N -0.61 -17.79 3.33 -811.80 -2.70 -20.49 16 11 C 0.12 2.94 6.35 86.85 0.55 3.49 16 12 C -0.11 -2.82 3.25 -9.40 -0.03 -2.85 16 13 H 0.08 2.23 8.00 -2.38 -0.02 2.21 16 14 C -0.13 -3.02 9.31 71.98 0.67 -2.35 16 15 C 0.17 5.99 3.06 46.18 0.14 6.13 16 16 H 0.07 2.49 8.02 -2.39 -0.02 2.47 16 17 N -0.74 -31.86 4.98 -317.34 -1.58 -33.44 16 18 C -0.23 -12.46 10.46 84.03 0.88 -11.59 16 19 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 20 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 21 N -0.98 -61.71 13.97 21.65 0.30 -61.41 16 22 Si 0.95 44.20 27.74 68.60 1.90 46.11 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 C 0.08 2.75 5.84 86.73 0.51 3.26 16 27 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.05 1.44 7.57 -2.39 -0.02 1.43 16 29 H 0.08 2.20 5.88 -2.39 -0.01 2.18 16 30 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 1.98 8.03 -2.39 -0.02 1.96 16 32 H 0.42 1.85 8.83 -92.71 -0.82 1.03 16 33 H 0.41 3.92 8.93 -92.71 -0.83 3.09 16 34 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 35 H 0.08 1.87 7.99 -2.39 -0.02 1.85 16 36 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.39 8.08 -2.39 -0.02 1.37 16 39 H 0.37 15.39 5.57 -92.71 -0.52 14.87 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.06 2.23 7.46 -2.38 -0.02 2.22 16 42 H 0.06 2.06 8.01 -2.39 -0.02 2.04 16 Total: -1.00 -73.25 341.46 0.35 -72.90 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -1.17 Total: 30.09 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.24 Total: 13.17 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -5.52 Total: -126.18 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.09 Total: -36.09 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.11 kcal Total: -73.25 0.35 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215314264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.434 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds