Wall clock time and date at job start Tue Mar 31 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46885 * 2 1 4 4 C 1.50697 * 109.47359 * 239.99827 * 2 1 3 5 5 N 1.34772 * 120.00112 * 59.99760 * 4 2 1 6 6 O 1.21281 * 119.99594 * 240.00022 * 4 2 1 7 7 C 1.50700 * 109.46929 * 119.99401 * 2 1 3 8 8 O 1.21282 * 119.99829 * 119.99973 * 7 2 1 9 9 N 1.34774 * 120.00347 * 300.00686 * 7 2 1 10 10 C 1.46493 * 120.00256 * 179.97438 * 9 7 2 11 11 C 1.53349 * 109.42022 * 275.12556 * 10 9 7 12 12 C 1.53196 * 109.15353 * 178.67345 * 11 10 9 13 13 N 1.46928 * 108.89135 * 54.57497 * 12 11 10 14 14 C 1.36936 * 120.63013 * 126.29699 * 13 12 11 15 15 H 1.07999 * 120.00022 * 331.83633 * 14 13 12 16 16 C 1.38813 * 120.00005 * 151.82709 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.09585 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.09475 * 16 14 13 19 19 H 1.48494 * 109.47083 * 60.00061 * 18 16 14 20 20 H 1.48500 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47024 * 300.00112 * 18 16 14 22 22 C 1.46924 * 118.73859 * 306.32337 * 13 12 11 23 23 C 1.53044 * 109.46300 * 154.99736 * 10 9 7 24 24 H 1.09000 * 109.47834 * 300.00278 * 1 2 3 25 25 H 1.09004 * 109.47398 * 60.00449 * 1 2 3 26 26 H 1.09005 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47126 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47080 * 299.99262 * 3 2 1 29 29 H 1.08999 * 109.47631 * 59.99338 * 3 2 1 30 30 H 0.97004 * 120.00282 * 0.02562 * 5 4 2 31 31 H 0.97001 * 120.00437 * 179.97438 * 5 4 2 32 32 H 0.97003 * 119.99662 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.46113 * 35.02623 * 10 9 7 34 34 H 1.08998 * 109.68701 * 58.70834 * 11 10 9 35 35 H 1.09000 * 109.47234 * 298.50902 * 11 10 9 36 36 H 1.08996 * 109.58345 * 294.72319 * 12 11 10 37 37 H 1.08994 * 109.58644 * 174.43734 * 12 11 10 38 38 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.58664 * 173.39523 * 22 13 12 40 40 H 1.08996 * 109.58580 * 293.67452 * 22 13 12 41 41 H 1.08992 * 109.49619 * 61.43083 * 23 10 9 42 42 H 1.08999 * 109.52313 * 301.35096 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7068 -0.2501 -2.4545 6 8 2.7296 -1.6965 -1.1190 7 6 2.0323 -0.7103 1.2305 8 8 2.7295 -1.6964 1.1194 9 7 1.7066 -0.2498 2.4546 10 6 2.1944 -0.9406 3.6508 11 6 1.2487 -2.0985 3.9922 12 6 1.7822 -2.8368 5.2239 13 7 1.9722 -1.8693 6.3133 14 6 1.3982 -2.0773 7.5390 15 1 0.4832 -2.6456 7.6175 16 6 1.9926 -1.5577 8.6808 17 7 3.2478 -1.1631 8.6480 18 14 1.0109 -1.4185 10.2640 19 1 0.5506 -2.7673 10.6812 20 1 1.8676 -0.8362 11.3281 21 1 -0.1661 -0.5409 10.0411 22 6 2.7891 -0.6742 6.0622 23 6 2.2459 0.0429 4.8223 24 1 -0.3635 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.1494 0.5388 -2.5436 31 1 2.0304 -0.7071 -3.2465 32 1 1.1491 0.5390 2.5435 33 1 3.1937 -1.3327 3.4616 34 1 1.1938 -2.7883 3.1501 35 1 0.2549 -1.7050 4.2062 36 1 2.7353 -3.3077 4.9832 37 1 1.0660 -3.5983 5.5322 38 1 3.6629 -0.7997 9.4457 39 1 2.7352 -0.0074 6.9228 40 1 3.8247 -0.9686 5.8924 41 1 1.2429 0.4163 5.0281 42 1 2.8999 0.8772 4.5689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227877007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:13 Heat of formation + Delta-G solvation = -90.282985 kcal Electronic energy + Delta-G solvation = -23299.742385 eV Core-core repulsion = 19892.734300 eV Total energy + Delta-G solvation = -3407.008085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.82751 -40.02859 -38.71698 -36.30313 -35.80521 -34.17357 -33.59812 -31.75010 -31.03454 -28.33316 -27.02095 -25.34569 -24.15544 -23.83088 -22.35288 -21.17009 -20.35042 -19.05575 -18.49320 -17.73440 -17.03791 -16.85074 -16.60284 -16.31697 -15.67408 -15.41686 -15.34659 -15.05842 -14.98752 -14.71242 -14.30511 -14.09551 -13.48169 -13.27735 -13.25225 -13.19511 -13.06244 -12.99830 -12.57205 -12.54083 -12.28094 -12.20336 -12.03738 -11.88286 -11.55351 -11.35255 -11.01803 -10.60230 -10.55099 -10.34439 -9.96064 -8.71568 -7.87670 -5.34161 1.49664 1.51316 1.58861 1.60194 1.76216 2.01073 2.52496 2.63460 3.27787 3.51918 3.66313 3.74173 3.88483 3.92997 4.04748 4.12285 4.32295 4.45309 4.63352 4.68458 4.70154 4.77857 4.80997 4.81761 4.85183 5.02653 5.04308 5.14496 5.19176 5.22884 5.27949 5.46056 5.58240 5.64157 5.70762 5.94688 6.38488 6.48863 6.65343 7.14080 7.33245 7.47042 7.83029 8.36895 9.19407 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.040965 B = 0.003553 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.352410 B = 7879.130885 C = 7987.886487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.137 4.137 4 C 0.517 3.483 5 N -0.830 5.830 6 O -0.566 6.566 7 C 0.508 3.492 8 O -0.558 6.558 9 N -0.706 5.706 10 C 0.163 3.837 11 C -0.122 4.122 12 C 0.144 3.856 13 N -0.608 5.608 14 C -0.267 4.267 15 H 0.068 0.932 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.273 1.273 22 C 0.178 3.822 23 C -0.125 4.125 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.419 0.581 31 H 0.408 0.592 32 H 0.414 0.586 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.001 0.999 37 H 0.057 0.943 38 H 0.251 0.749 39 H 0.065 0.935 40 H -0.010 1.010 41 H 0.076 0.924 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 11.836 -21.313 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.194 4.194 4 C 0.300 3.700 5 N -0.396 5.396 6 O -0.443 6.443 7 C 0.294 3.706 8 O -0.435 6.435 9 N -0.359 5.359 10 C 0.058 3.942 11 C -0.162 4.162 12 C 0.018 3.982 13 N -0.332 5.332 14 C -0.397 4.397 15 H 0.086 0.914 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.800 3.200 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.198 1.198 22 C 0.052 3.948 23 C -0.165 4.165 24 H 0.112 0.888 25 H 0.129 0.871 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.251 0.749 31 H 0.240 0.760 32 H 0.251 0.749 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.008 0.992 41 H 0.094 0.906 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.508 10.571 -21.008 25.010 hybrid contribution -0.052 -0.062 0.813 0.817 sum -8.561 10.509 -20.195 24.322 Atomic orbital electron populations 1.21946 0.87640 1.03307 1.06507 1.20931 1.00762 0.98510 0.90151 1.21952 1.01294 0.89640 1.06552 1.20376 0.79585 0.83778 0.86233 1.43568 1.55533 1.34080 1.06406 1.90895 1.38583 1.27819 1.86959 1.20749 0.80093 0.84378 0.85394 1.90837 1.38374 1.27569 1.86686 1.45938 1.53634 1.32060 1.04233 1.20658 0.96579 0.92890 0.84097 1.22203 0.99519 0.97440 0.97064 1.20949 0.96992 0.91905 0.88389 1.44338 1.59357 1.20641 1.08826 1.19509 1.03349 1.32585 0.84287 0.91438 1.25853 0.95910 1.02000 1.00687 1.70190 1.11555 1.47271 1.29174 0.85281 0.77905 0.78059 0.78803 1.20425 1.22047 1.19847 1.20576 0.90795 0.88323 0.95126 1.22232 1.02522 0.97504 0.94235 0.88753 0.87109 0.93397 0.93392 0.87111 0.88679 0.74891 0.75999 0.74885 0.93417 0.92931 0.90912 0.98135 0.92423 0.93976 0.91632 0.99194 0.90577 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.27 71.98 0.59 -0.85 16 2 C -0.10 -1.77 0.72 -53.68 -0.04 -1.81 16 3 C -0.14 -1.43 8.27 71.98 0.59 -0.84 16 4 C 0.52 12.02 6.74 87.66 0.59 12.61 16 5 N -0.83 -8.94 8.66 -173.54 -1.50 -10.45 16 6 O -0.57 -21.42 15.02 20.41 0.31 -21.11 16 7 C 0.51 15.31 6.44 87.66 0.56 15.87 16 8 O -0.56 -24.23 13.84 20.41 0.28 -23.95 16 9 N -0.71 -18.57 4.86 -441.92 -2.15 -20.71 16 10 C 0.16 5.76 2.42 45.12 0.11 5.87 16 11 C -0.12 -4.58 5.68 30.78 0.17 -4.40 16 12 C 0.14 6.55 6.51 86.36 0.56 7.11 16 13 N -0.61 -31.40 2.99 -699.11 -2.09 -33.49 16 14 C -0.27 -14.86 9.58 84.03 0.81 -14.05 16 15 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 16 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 17 N -0.94 -55.66 11.20 21.65 0.24 -55.42 16 18 Si 0.97 44.53 29.59 68.60 2.03 46.56 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 C 0.18 8.64 5.30 86.36 0.46 9.10 16 23 C -0.13 -4.45 5.55 30.67 0.17 -4.28 16 24 H 0.09 0.69 7.56 -2.39 -0.02 0.67 16 25 H 0.11 0.30 7.57 -2.38 -0.02 0.28 16 26 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.11 0.28 7.56 -2.39 -0.02 0.27 16 29 H 0.09 0.67 7.56 -2.39 -0.02 0.65 16 30 H 0.42 0.82 7.67 -92.71 -0.71 0.11 16 31 H 0.41 3.96 8.93 -92.71 -0.83 3.14 16 32 H 0.41 7.38 7.44 -92.71 -0.69 6.69 16 33 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.07 3.51 6.06 -2.39 -0.01 3.50 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -85.94 335.06 0.94 -85.00 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -1.18 Total: 11.58 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 5.00 Total: 22.00 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -5.50 Total: -120.07 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: 0.59 Total: -45.06 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -85.94 0.94 -85.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227877007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.284 kcal (2) G-P(sol) polarization free energy of solvation -85.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds