Wall clock time and date at job start Tue Mar 31 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.46777 * 2 1 4 4 O 1.21282 * 120.00248 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99891 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00140 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.47258 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99925 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00057 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99923 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99808 * 179.97438 * 9 7 6 12 12 C 1.52998 * 109.47313 * 264.73249 * 11 9 7 13 13 H 1.09000 * 112.73595 * 316.12297 * 12 11 9 14 14 C 1.53492 * 113.46552 * 86.94255 * 12 11 9 15 15 C 1.53495 * 83.34316 * 140.84718 * 14 12 11 16 16 N 1.47062 * 87.98610 * 333.93113 * 15 14 12 17 17 C 1.36943 * 136.05733 * 207.14839 * 16 15 14 18 18 H 1.08001 * 119.99837 * 174.41267 * 17 16 15 19 19 C 1.38810 * 119.99792 * 354.41703 * 17 16 15 20 20 N 1.31620 * 120.00313 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99776 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46875 * 59.99763 * 21 19 17 23 23 H 1.48496 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47001 * 299.99984 * 21 19 17 25 25 H 1.09007 * 109.47054 * 299.99711 * 1 2 3 26 26 H 1.08994 * 109.47347 * 59.99760 * 1 2 3 27 27 H 1.09003 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47215 * 240.00083 * 2 1 3 29 29 H 1.09001 * 109.47207 * 119.99895 * 2 1 3 30 30 H 0.97001 * 120.00017 * 0.02562 * 5 3 2 31 31 H 1.08998 * 109.46935 * 60.00183 * 6 5 3 32 32 H 1.09001 * 109.47162 * 300.00194 * 6 5 3 33 33 H 1.09010 * 109.46955 * 275.30032 * 10 9 7 34 34 H 1.08999 * 109.47298 * 35.29685 * 10 9 7 35 35 H 1.08998 * 109.47032 * 155.30403 * 10 9 7 36 36 H 1.08996 * 109.47633 * 24.73802 * 11 9 7 37 37 H 1.09005 * 109.46639 * 144.73548 * 11 9 7 38 38 H 1.08998 * 114.21134 * 254.43630 * 14 12 11 39 39 H 1.09005 * 114.21075 * 27.26481 * 14 12 11 40 40 H 1.09001 * 113.46840 * 219.14925 * 15 14 12 41 41 H 1.08999 * 113.52217 * 88.72190 * 15 14 12 42 42 H 0.96996 * 119.99734 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8456 3.0484 0.0000 7 6 5.3527 3.0484 0.0001 8 8 5.9591 1.9981 0.0001 9 7 6.0266 4.2157 0.0001 10 6 5.2940 5.4844 0.0007 11 6 7.4915 4.2157 0.0008 12 6 8.0009 4.3484 1.4374 13 1 7.4578 5.1010 2.0091 14 6 8.1335 3.0037 2.1656 15 6 9.4093 3.6404 2.7339 16 7 9.4623 4.4839 1.5304 17 6 10.4416 5.1165 0.8121 18 1 10.1956 5.6148 -0.1140 19 6 11.7506 5.1172 1.2742 20 7 12.0504 4.5103 2.4030 21 14 13.0866 5.9796 0.2939 22 1 12.7519 7.4203 0.1620 23 1 14.3870 5.8353 0.9962 24 1 13.1830 5.3681 -1.0560 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9877 0.9299 0.0005 31 1 3.4819 3.5627 0.8895 32 1 3.4827 3.5617 -0.8905 33 1 5.0298 5.7518 -1.0226 34 1 4.3861 5.3795 0.5947 35 1 5.9210 6.2658 0.4300 36 1 7.8551 3.2823 -0.4288 37 1 7.8550 5.0547 -0.5926 38 1 7.3571 2.8190 2.9080 39 1 8.3133 2.1543 1.5065 40 1 10.2439 2.9438 2.8130 41 1 9.2425 4.2039 3.6519 42 1 12.9651 4.5105 2.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231227379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:41 Heat of formation + Delta-G solvation = -14.393620 kcal Electronic energy + Delta-G solvation = -22436.782051 eV Core-core repulsion = 19033.064776 eV Total energy + Delta-G solvation = -3403.717275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38348 -39.42566 -37.95867 -35.43674 -34.59518 -33.04970 -32.20874 -29.55245 -27.90384 -27.64365 -26.18047 -24.15384 -23.39578 -22.13497 -20.56433 -19.34446 -19.14515 -17.71864 -16.82672 -16.70167 -16.31522 -16.04790 -15.57949 -15.33977 -14.76597 -14.26016 -14.07436 -13.87663 -13.51451 -13.14290 -13.07292 -12.76764 -12.57115 -12.48626 -12.16416 -12.01853 -11.99912 -11.48470 -11.43653 -11.09538 -10.88655 -10.75862 -10.43976 -10.12457 -9.92852 -9.84649 -9.80575 -9.45138 -9.35682 -8.79774 -8.37978 -6.87830 -5.77549 -3.10026 2.41569 2.58215 2.69384 3.27938 3.38372 3.42407 3.43999 4.32998 4.45881 4.52212 4.80883 4.81570 5.00813 5.12046 5.16859 5.23436 5.31045 5.35223 5.46692 5.52615 5.56293 5.65353 5.65558 5.84328 5.92544 5.96114 6.04102 6.12324 6.37211 6.45862 6.60148 6.73887 6.79523 7.24706 7.29028 7.38397 7.48718 7.57793 7.97275 7.99816 8.13137 9.02460 9.69714 10.65096 11.40442 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039004 B = 0.003072 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.708001 B = 9111.111472 C = 9414.837361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.513 3.487 4 O -0.546 6.546 5 N -0.719 5.719 6 C 0.101 3.899 7 C 0.505 3.495 8 O -0.533 6.533 9 N -0.604 5.604 10 C 0.073 3.927 11 C 0.114 3.886 12 C 0.130 3.870 13 H 0.040 0.960 14 C -0.158 4.158 15 C 0.156 3.844 16 N -0.601 5.601 17 C -0.221 4.221 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.413 0.587 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 -5.368 -4.516 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.300 3.700 4 O -0.424 6.424 5 N -0.374 5.374 6 C -0.026 4.026 7 C 0.292 3.708 8 O -0.410 6.410 9 N -0.337 5.337 10 C -0.070 4.070 11 C -0.009 4.009 12 C 0.022 3.978 13 H 0.058 0.942 14 C -0.196 4.196 15 C 0.031 3.969 16 N -0.327 5.327 17 C -0.348 4.348 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.251 0.749 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.599 -5.125 -4.585 20.770 hybrid contribution 1.173 0.533 -0.351 1.335 sum -18.426 -4.592 -4.936 19.621 Atomic orbital electron populations 1.21531 0.92941 1.01608 1.03344 1.21621 0.98602 0.93442 1.04698 1.20815 0.81567 0.92125 0.75505 1.90699 1.55356 1.46584 1.49711 1.45821 1.07680 1.08447 1.75497 1.21106 0.91776 0.85338 1.04424 1.20384 0.89339 0.84184 0.76905 1.90700 1.69642 1.30731 1.49898 1.47817 1.07904 1.05592 1.72390 1.21876 0.97224 0.86123 1.01805 1.21973 0.75990 1.03599 0.99355 1.22430 0.87563 0.94924 0.92924 0.94226 1.23653 0.99102 0.97055 0.99807 1.21964 0.93937 0.91715 0.89323 1.45635 0.99230 1.59191 1.28612 1.18826 0.86333 1.28004 1.01640 0.90293 1.24819 0.97310 1.00945 0.97239 1.69839 1.18510 1.46890 1.21215 0.86220 0.81277 0.79304 0.79067 1.21174 1.21547 1.21037 0.91965 0.92005 0.92034 0.88732 0.88656 0.74904 0.88523 0.88678 0.92360 0.91259 0.90087 0.89186 0.90767 0.93294 0.90030 0.91715 0.95791 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.14 -1.02 6.42 -27.88 -0.18 -1.20 16 3 C 0.51 5.49 7.83 -10.99 -0.09 5.40 16 4 O -0.55 -7.65 15.98 5.56 0.09 -7.56 16 5 N -0.72 -7.58 5.53 -61.47 -0.34 -7.92 16 6 C 0.10 1.09 4.78 -5.19 -0.02 1.07 16 7 C 0.51 6.92 7.74 -10.98 -0.09 6.84 16 8 O -0.53 -8.91 15.17 5.56 0.08 -8.83 16 9 N -0.60 -8.24 2.87 -181.57 -0.52 -8.77 16 10 C 0.07 0.72 10.17 59.85 0.61 1.32 16 11 C 0.11 1.99 5.39 -4.05 -0.02 1.96 16 12 C 0.13 2.63 4.31 -72.41 -0.31 2.32 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.16 -3.19 8.02 -26.22 -0.21 -3.40 16 15 C 0.16 3.79 7.27 -8.52 -0.06 3.73 16 16 N -0.60 -15.33 3.65 -177.03 -0.65 -15.97 16 17 C -0.22 -6.09 10.55 -15.06 -0.16 -6.25 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.49 11.65 55.49 0.65 -26.85 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.41 4.17 7.44 -40.82 -0.30 3.87 16 31 H 0.10 0.99 7.41 -51.93 -0.38 0.60 16 32 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 33 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.07 0.54 6.66 -51.93 -0.35 0.20 16 35 H 0.08 0.82 8.03 -51.93 -0.42 0.41 16 36 H 0.09 1.76 7.00 -51.93 -0.36 1.40 16 37 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.72 7.93 -51.93 -0.41 1.31 16 40 H 0.06 1.73 7.38 -51.93 -0.38 1.35 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -34.01 350.30 -7.52 -41.52 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.80 Total: 1.22 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.29 Total: 10.88 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.86 Total: -59.50 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.17 Total: -16.39 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.01 -7.52 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231227379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.131 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds