Wall clock time and date at job start Tue Mar 31 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99982 * 2 1 4 4 C 1.53000 * 109.47399 * 274.28628 * 3 2 1 5 5 H 1.08990 * 112.74130 * 44.67740 * 4 3 2 6 6 C 1.53501 * 113.46326 * 273.93683 * 4 3 2 7 7 C 1.53608 * 83.30438 * 219.16865 * 6 4 3 8 8 N 1.47060 * 88.00705 * 26.02223 * 7 6 4 9 9 C 1.36938 * 136.05728 * 152.89215 * 8 7 6 10 10 H 1.08002 * 119.99836 * 186.03732 * 9 8 7 11 11 C 1.38811 * 120.00522 * 6.03575 * 9 8 7 12 12 N 1.31621 * 119.99334 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00494 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46849 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.46947 * 119.99995 * 13 11 9 16 16 H 1.48500 * 109.47247 * 240.00384 * 13 11 9 17 17 C 1.34778 * 120.00006 * 179.73043 * 2 1 3 18 18 O 1.21277 * 120.00337 * 176.07309 * 17 2 1 19 19 C 1.50702 * 119.99774 * 356.07137 * 17 2 1 20 20 C 1.52998 * 109.47397 * 310.15395 * 19 17 2 21 21 C 1.53005 * 109.46834 * 70.15420 * 19 17 2 22 22 C 1.50699 * 109.46938 * 190.15205 * 19 17 2 23 23 N 1.34776 * 120.00196 * 180.02562 * 22 19 17 24 24 O 1.21284 * 119.99986 * 0.02562 * 22 19 17 25 25 H 1.09008 * 109.46668 * 274.41121 * 1 2 3 26 26 H 1.08994 * 109.47228 * 34.40924 * 1 2 3 27 27 H 1.08996 * 109.47059 * 154.41142 * 1 2 3 28 28 H 1.09005 * 109.47445 * 34.28430 * 3 2 1 29 29 H 1.09003 * 109.47506 * 154.28454 * 3 2 1 30 30 H 1.09000 * 114.20981 * 332.73588 * 6 4 3 31 31 H 1.09005 * 114.20693 * 105.56680 * 6 4 3 32 32 H 1.09001 * 113.41935 * 271.24018 * 7 6 4 33 33 H 1.09002 * 113.56089 * 140.82947 * 7 6 4 34 34 H 0.96996 * 119.99635 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.47096 * 60.00044 * 20 19 17 36 36 H 1.08998 * 109.47256 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.47238 * 299.99994 * 20 19 17 38 38 H 1.08998 * 109.47111 * 77.12233 * 21 19 17 39 39 H 1.08996 * 109.47076 * 197.11845 * 21 19 17 40 40 H 1.09001 * 109.47315 * 317.12016 * 21 19 17 41 41 H 0.97003 * 119.99580 * 359.97438 * 23 22 19 42 42 H 0.96999 * 120.00324 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3592 1.7643 -1.4384 5 1 1.4410 1.6785 -2.0193 6 6 3.5892 1.1842 -2.1502 7 6 3.7016 2.6035 -2.7267 8 7 2.9911 3.0888 -1.5341 9 6 2.9408 4.2589 -0.8244 10 1 2.3828 4.3067 0.0991 11 6 3.6069 5.3835 -1.2918 12 7 4.2864 5.3253 -2.4175 13 14 3.5376 6.9797 -0.3240 14 1 2.7140 6.7835 0.8960 15 1 4.9126 7.3815 0.0669 16 1 2.9315 8.0428 -1.1653 17 6 2.1389 -1.1672 0.0055 18 8 3.3496 -1.1688 -0.0664 19 6 1.3880 -2.4703 0.1010 20 6 0.3947 -2.4026 1.2628 21 6 0.6298 -2.7189 -1.2045 22 6 2.3624 -3.5953 0.3381 23 7 1.9145 -4.8608 0.4572 24 8 3.5496 -3.3617 0.4217 25 1 -0.3633 0.0790 1.0247 26 1 -0.3633 0.8478 -0.5807 27 1 -0.3633 -0.9268 -0.4438 28 1 1.6438 2.0080 0.5789 29 1 3.1810 1.1205 0.4459 30 1 4.4040 0.9079 -1.4809 31 1 3.3575 0.4178 -2.8899 32 1 3.1414 2.7411 -3.6516 33 1 4.7275 2.9649 -2.7979 34 1 4.7516 6.1112 -2.7443 35 1 -0.3101 -1.5889 1.0913 36 1 -0.1487 -3.3450 1.3316 37 1 0.9348 -2.2255 2.1928 38 1 1.3256 -3.0661 -1.9683 39 1 -0.1372 -3.4757 -1.0407 40 1 0.1609 -1.7919 -1.5345 41 1 0.9649 -5.0475 0.3906 42 1 2.5416 -5.5849 0.6101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235600739.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:19 Heat of formation + Delta-G solvation = 10.137375 kcal Electronic energy + Delta-G solvation = -23653.594081 eV Core-core repulsion = 20250.940550 eV Total energy + Delta-G solvation = -3402.653531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94747 -38.83715 -37.67270 -35.81290 -34.47495 -33.20618 -32.09007 -28.44438 -27.79483 -27.72727 -26.72071 -24.08861 -23.31218 -22.68675 -20.76699 -19.08469 -19.05909 -17.52523 -16.80361 -16.65597 -15.72696 -15.68322 -15.37592 -15.06546 -14.68796 -14.29924 -13.94144 -13.78397 -13.54782 -13.40631 -13.21721 -12.54259 -12.47835 -12.23525 -12.01522 -11.92712 -11.52417 -11.38520 -11.17262 -11.00385 -10.76425 -10.69246 -10.31791 -9.96396 -9.77577 -9.76883 -9.69736 -9.37664 -9.05705 -8.72947 -8.16727 -6.78775 -5.70640 -3.02370 2.57182 2.91934 2.99189 3.42451 3.46498 3.50030 3.52180 4.24414 4.44285 4.51837 4.68055 4.79055 4.97781 5.18276 5.26464 5.32863 5.35732 5.37254 5.41769 5.53468 5.55476 5.71278 5.81935 5.88132 5.99254 6.10246 6.17508 6.51095 6.63252 6.64779 6.76682 6.88809 6.92143 7.15752 7.34664 7.56144 7.67054 7.67570 8.05070 8.19921 8.52874 9.09850 9.76964 10.73892 11.47671 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.031744 B = 0.004081 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.837239 B = 6858.861333 C = 7118.105290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.610 5.610 3 C 0.117 3.883 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.156 4.156 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.217 4.217 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.518 3.482 18 O -0.486 6.486 19 C -0.103 4.103 20 C -0.163 4.163 21 C -0.148 4.148 22 C 0.525 3.475 23 N -0.859 5.859 24 O -0.493 6.493 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.397 0.603 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 -20.046 4.804 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.345 5.345 3 C -0.006 4.006 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.327 5.327 9 C -0.344 4.344 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.302 3.698 18 O -0.357 6.357 19 C -0.110 4.110 20 C -0.220 4.220 21 C -0.205 4.205 22 C 0.307 3.693 23 N -0.425 5.425 24 O -0.364 6.364 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.225 0.775 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.079 -19.295 4.869 23.279 hybrid contribution -0.568 0.582 0.405 0.908 sum -12.647 -18.714 5.274 23.194 Atomic orbital electron populations 1.22341 0.80854 1.03595 1.01557 1.47756 1.06329 1.06247 1.74198 1.21870 0.97386 0.82205 0.99096 1.22408 0.95042 0.87103 0.93131 0.94390 1.23657 0.98764 0.97182 0.99860 1.21989 0.97910 0.87656 0.89412 1.45628 1.48961 1.08518 1.29611 1.18924 1.27772 0.85843 1.01882 0.90231 1.24813 1.00664 0.97679 0.97277 1.69868 1.36467 1.28773 1.21351 0.86076 0.77345 0.83696 0.78833 1.20482 1.21727 1.21810 1.19737 0.87904 0.84152 0.78020 1.90848 1.13028 1.85968 1.45903 1.20851 0.96622 0.94083 0.99455 1.22413 0.98725 1.04286 0.96593 1.22049 1.00180 1.03671 0.94635 1.19936 0.89124 0.83656 0.76607 1.43818 1.12178 1.08616 1.77884 1.90913 1.16258 1.82914 1.46288 0.92491 0.90944 0.89783 0.91078 0.89492 0.89946 0.93376 0.95884 0.91821 0.93757 0.88688 0.91400 0.91624 0.91258 0.90892 0.89757 0.77514 0.76809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 8.31 59.85 0.50 1.08 16 2 N -0.61 -9.00 2.86 -181.57 -0.52 -9.52 16 3 C 0.12 2.21 5.39 -4.04 -0.02 2.19 16 4 C 0.13 2.81 4.31 -72.40 -0.31 2.50 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 6 C -0.16 -3.43 7.68 -26.16 -0.20 -3.63 16 7 C 0.16 3.97 7.27 -8.46 -0.06 3.91 16 8 N -0.60 -15.93 3.65 -176.82 -0.64 -16.58 16 9 C -0.22 -6.16 10.55 -15.06 -0.16 -6.32 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -28.15 11.66 55.49 0.65 -27.50 16 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 17 C 0.52 8.28 6.42 -10.98 -0.07 8.21 16 18 O -0.49 -10.35 13.47 -18.84 -0.25 -10.60 16 19 C -0.10 -1.12 0.59 -156.81 -0.09 -1.21 16 20 C -0.16 -1.20 7.87 37.16 0.29 -0.91 16 21 C -0.15 -1.16 7.96 37.16 0.30 -0.86 16 22 C 0.52 6.62 6.66 -10.99 -0.07 6.55 16 23 N -0.86 -6.14 8.67 31.22 0.27 -5.87 16 24 O -0.49 -9.22 15.08 -18.85 -0.28 -9.51 16 25 H 0.06 0.46 7.09 -51.92 -0.37 0.09 16 26 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.08 0.60 3.29 -51.93 -0.17 0.43 16 28 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 29 H 0.09 1.88 7.09 -51.93 -0.37 1.51 16 30 H 0.08 1.94 7.95 -51.93 -0.41 1.52 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.78 7.40 -51.93 -0.38 1.39 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 0.59 3.72 -51.93 -0.19 0.39 16 36 H 0.07 0.29 7.56 -51.93 -0.39 -0.10 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 39 H 0.07 0.31 8.00 -51.93 -0.42 -0.11 16 40 H 0.08 0.65 5.40 -51.93 -0.28 0.37 16 41 H 0.40 1.43 8.13 -40.82 -0.33 1.10 16 42 H 0.40 2.53 8.93 -40.82 -0.36 2.17 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -38.49 332.27 -6.98 -45.47 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.18 Total: 0.41 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 0.00 Total: 11.19 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.25 Total: -59.47 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.54 Total: -20.11 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -38.49 -6.98 -45.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235600739.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.607 kcal (2) G-P(sol) polarization free energy of solvation -38.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds