Wall clock time and date at job start Tue Mar 31 2020 02:53:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08995 * 109.47463 * 2 1
4 4 C 1.52998 * 109.47535 * 239.99700 * 2 1 3
5 5 C 1.53001 * 109.47544 * 175.00212 * 4 2 1
6 6 C 1.53000 * 109.47026 * 179.97438 * 5 4 2
7 7 N 1.46497 * 109.46794 * 179.97438 * 6 5 4
8 8 C 1.36939 * 119.99870 * 180.02562 * 7 6 5
9 9 H 1.07999 * 120.00063 * 359.97438 * 8 7 6
10 10 C 1.38815 * 119.99969 * 179.97438 * 8 7 6
11 11 N 1.31613 * 119.99896 * 359.97438 * 10 8 7
12 12 Si 1.86800 * 120.00038 * 179.97438 * 10 8 7
13 13 H 1.48507 * 109.46947 * 359.97438 * 12 10 8
14 14 H 1.48500 * 109.47427 * 119.99811 * 12 10 8
15 15 H 1.48497 * 109.47098 * 240.00230 * 12 10 8
16 16 N 1.46508 * 109.47196 * 119.99793 * 2 1 3
17 17 C 1.34778 * 119.99452 * 275.00201 * 16 2 1
18 18 O 1.21279 * 120.00680 * 359.97438 * 17 16 2
19 19 C 1.50708 * 119.99670 * 179.97438 * 17 16 2
20 20 H 1.08995 * 115.54814 * 61.44780 * 19 17 16
21 21 C 1.52997 * 117.49658 * 207.15847 * 19 17 16
22 22 C 1.52994 * 117.49600 * 275.78098 * 19 17 16
23 23 H 1.09003 * 117.50100 * 145.02002 * 22 19 17
24 24 C 1.50707 * 117.50163 * 0.02562 * 22 19 17
25 25 N 1.34777 * 119.99676 * 84.35841 * 24 22 19
26 26 O 1.21274 * 119.99836 * 264.35414 * 24 22 19
27 27 H 1.08998 * 109.47260 * 300.00482 * 1 2 3
28 28 H 1.09000 * 109.46760 * 60.00314 * 1 2 3
29 29 H 1.08999 * 109.46838 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46824 * 294.99905 * 4 2 1
31 31 H 1.08994 * 109.46833 * 54.99649 * 4 2 1
32 32 H 1.08999 * 109.46889 * 300.00160 * 5 4 2
33 33 H 1.09000 * 109.46851 * 59.99731 * 5 4 2
34 34 H 1.08997 * 109.46914 * 299.99415 * 6 5 4
35 35 H 1.09003 * 109.47077 * 59.99843 * 6 5 4
36 36 H 0.97001 * 120.00368 * 359.97438 * 7 6 5
37 37 H 0.97006 * 119.99893 * 179.97438 * 11 10 8
38 38 H 0.96998 * 120.00186 * 95.00026 * 16 2 1
39 39 H 1.09005 * 117.49780 * 214.97487 * 21 19 17
40 40 H 1.08993 * 117.50172 * 0.02562 * 21 19 17
41 41 H 0.97000 * 120.00449 * 359.97438 * 25 24 22
42 42 H 0.96998 * 119.99477 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 3.5649 -0.6134 -1.3136
6 6 4.0750 -1.3353 -2.5624
7 7 5.5349 -1.2314 -2.6244
8 6 6.2187 -1.8056 -3.6626
9 1 5.6818 -2.3354 -4.4355
10 6 7.6021 -1.7067 -3.7217
11 7 8.2564 -1.0607 -2.7800
12 14 8.5350 -2.4906 -5.1375
13 1 7.5747 -3.1532 -6.0564
14 1 9.2853 -1.4433 -5.8761
15 1 9.4864 -3.4990 -4.6054
16 7 2.0184 -0.6906 1.1963
17 6 2.1470 -0.0181 2.3572
18 8 1.8590 1.1587 2.4115
19 6 2.6489 -0.7286 3.5879
20 1 3.6553 -1.1406 3.5153
21 6 2.2031 -0.1867 4.9475
22 6 1.6269 -1.5032 4.4224
23 1 1.9612 -2.4246 4.8992
24 6 0.1956 -1.4978 3.9505
25 7 -0.2096 -2.3820 3.0175
26 8 -0.5914 -0.6980 4.4104
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.7518 -1.7716 -1.2054
31 1 1.6055 -0.2619 -2.1368
32 1 3.8533 0.4369 -1.3573
33 1 3.9995 -1.0728 -0.4258
34 1 3.7867 -2.3855 -2.5182
35 1 3.6403 -0.8762 -3.4504
36 1 6.0172 -0.7552 -1.9304
37 1 9.2232 -0.9919 -2.8210
38 1 2.2491 -1.6317 1.1528
39 1 2.9165 -0.2420 5.7698
40 1 1.5467 0.6834 4.9518
41 1 0.4201 -3.0215 2.6494
42 1 -1.1307 -2.3782 2.7135
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001485738734.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:53:33
Heat of formation + Delta-G solvation = -57.672758 kcal
Electronic energy + Delta-G solvation = -22303.852721 eV
Core-core repulsion = 18898.258722 eV
Total energy + Delta-G solvation = -3405.593999 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.75845 -39.28776 -37.11027 -35.97605 -34.85881 -33.90072 -32.58809 -31.12906
-29.42011 -25.86371 -25.43289 -24.36825 -22.92861 -21.05159 -20.83603 -20.74727
-20.06057 -18.26086 -17.32965 -17.04097 -16.54126 -16.31267 -15.97505 -14.75734
-14.68149 -14.56659 -14.35145 -14.16765 -13.72748 -13.49600 -13.33841 -13.00865
-12.69686 -12.30871 -12.19559 -12.14927 -11.34920 -11.22086 -11.09923 -10.99101
-10.88673 -10.82922 -10.48292 -10.43581 -10.30580 -10.01945 -10.00881 -9.91554
-9.71165 -9.14978 -8.89103 -6.93497 -5.78094 -3.06876 2.15023 2.43919
2.88316 3.07894 3.41630 3.44468 3.47056 3.49536 4.25370 4.37303
4.46093 4.54838 4.68337 4.75765 4.94193 5.01394 5.11814 5.31372
5.38613 5.43643 5.54033 5.55674 5.60365 5.75925 5.82102 5.93072
6.04914 6.08615 6.17621 6.33021 6.37817 6.42104 6.44489 6.83653
6.87032 6.95795 7.38156 7.68476 7.92228 8.11682 8.40964 9.51878
10.10786 10.44963 11.44918
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.025042 B = 0.003051 C = 0.002914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.836075 B = 9176.300762 C = 9605.756795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.141 3.859
3 H 0.088 0.912
4 C -0.122 4.122
5 C -0.125 4.125
6 C 0.153 3.847
7 N -0.735 5.735
8 C -0.240 4.240
9 H 0.070 0.930
10 C -0.015 4.015
11 N -0.933 5.933
12 Si 0.907 3.093
13 H -0.280 1.280
14 H -0.291 1.291
15 H -0.291 1.291
16 N -0.714 5.714
17 C 0.538 3.462
18 O -0.529 6.529
19 C -0.169 4.169
20 H 0.142 0.858
21 C -0.113 4.113
22 C -0.177 4.177
23 H 0.140 0.860
24 C 0.545 3.455
25 N -0.848 5.848
26 O -0.532 6.532
27 H 0.057 0.943
28 H 0.065 0.935
29 H 0.055 0.945
30 H 0.067 0.933
31 H 0.079 0.921
32 H 0.062 0.938
33 H 0.061 0.939
34 H 0.016 0.984
35 H 0.017 0.983
36 H 0.383 0.617
37 H 0.255 0.745
38 H 0.399 0.601
39 H 0.115 0.885
40 H 0.115 0.885
41 H 0.402 0.598
42 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.411 -4.275 13.369 21.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.037 3.963
3 H 0.106 0.894
4 C -0.160 4.160
5 C -0.163 4.163
6 C 0.025 3.975
7 N -0.379 5.379
8 C -0.371 4.371
9 H 0.088 0.912
10 C -0.211 4.211
11 N -0.582 5.582
12 Si 0.738 3.262
13 H -0.206 1.206
14 H -0.218 1.218
15 H -0.219 1.219
16 N -0.365 5.365
17 C 0.323 3.677
18 O -0.405 6.405
19 C -0.190 4.190
20 H 0.160 0.840
21 C -0.151 4.151
22 C -0.198 4.198
23 H 0.157 0.843
24 C 0.328 3.672
25 N -0.411 5.411
26 O -0.408 6.408
27 H 0.076 0.924
28 H 0.084 0.916
29 H 0.074 0.926
30 H 0.085 0.915
31 H 0.097 0.903
32 H 0.080 0.920
33 H 0.079 0.921
34 H 0.034 0.966
35 H 0.035 0.965
36 H 0.217 0.783
37 H 0.064 0.936
38 H 0.234 0.766
39 H 0.133 0.867
40 H 0.134 0.866
41 H 0.230 0.770
42 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges -16.966 -2.908 13.639 21.962
hybrid contribution 0.949 -1.238 -0.971 1.837
sum -16.017 -4.146 12.667 20.837
Atomic orbital electron populations
1.22151 0.95424 1.01842 1.02434 1.21057 0.93583 0.97846 0.83793
0.89363 1.21843 0.96902 1.00661 0.96592 1.21732 0.93599 1.01493
0.99497 1.20644 0.86199 0.96384 0.94230 1.42392 1.00214 1.66190
1.29096 1.19287 0.89460 1.27031 1.01313 0.91172 1.24756 0.96466
1.01220 0.98669 1.69673 1.07154 1.46966 1.34425 0.86116 0.79893
0.78508 0.81674 1.20556 1.21838 1.21856 1.46001 1.67121 1.13933
1.09472 1.19560 0.77407 0.86932 0.83778 1.90728 1.49160 1.15766
1.84802 1.22416 1.00056 1.04139 0.92386 0.83992 1.22998 1.01707
0.95884 0.94470 1.22342 0.91626 1.00158 1.05679 0.84250 1.19609
0.88816 0.80005 0.78730 1.43760 1.15780 1.37945 1.43629 1.90772
1.55198 1.38333 1.56476 0.92392 0.91585 0.92637 0.91464 0.90290
0.91954 0.92058 0.96604 0.96537 0.78338 0.93556 0.76640 0.86687
0.86647 0.76972 0.76633
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16
2 C 0.14 1.55 2.58 -67.93 -0.17 1.38 16
3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16
4 C -0.12 -1.34 4.75 -26.73 -0.13 -1.47 16
5 C -0.13 -1.89 5.22 -26.73 -0.14 -2.03 16
6 C 0.15 2.98 6.26 -4.04 -0.03 2.95 16
7 N -0.73 -18.67 5.60 -59.91 -0.34 -19.01 16
8 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16
9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16
10 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16
11 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16
12 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16
13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
16 N -0.71 -7.04 4.53 -53.80 -0.24 -7.29 16
17 C 0.54 6.53 6.49 -10.98 -0.07 6.46 16
18 O -0.53 -8.81 16.26 5.56 0.09 -8.72 16
19 C -0.17 -1.46 6.18 -91.77 -0.57 -2.03 16
20 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16
21 C -0.11 -1.01 9.56 -26.73 -0.26 -1.26 16
22 C -0.18 -1.32 6.17 -91.77 -0.57 -1.88 16
23 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16
24 C 0.54 5.32 6.79 -10.98 -0.07 5.24 16
25 N -0.85 -4.95 8.87 31.22 0.28 -4.67 16
26 O -0.53 -7.79 17.44 5.56 0.10 -7.69 16
27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
33 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16
34 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16
35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
36 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16
37 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16
38 H 0.40 2.96 8.60 -40.82 -0.35 2.61 16
39 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16
40 H 0.12 1.38 7.71 -51.93 -0.40 0.98 16
41 H 0.40 1.22 8.83 -40.82 -0.36 0.86 16
42 H 0.40 2.17 8.93 -40.82 -0.36 1.81 16
LS Contribution 358.37 15.07 5.40 5.40
Total: -1.00 -37.06 358.37 -7.69 -44.75
By element:
Atomic # 1 Polarization: 15.58 SS G_CDS: -6.78 Total: 8.80 kcal
Atomic # 6 Polarization: 0.60 SS G_CDS: -1.90 Total: -1.29 kcal
Atomic # 7 Polarization: -58.98 SS G_CDS: 0.42 Total: -58.55 kcal
Atomic # 8 Polarization: -16.60 SS G_CDS: 0.19 Total: -16.41 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -37.06 -7.69 -44.75 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485738734.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.919 kcal
(2) G-P(sol) polarization free energy of solvation -37.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds