Wall clock time and date at job start Tue Mar 31 2020 02:53:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08995 * 109.47463 * 2 1
4 4 C 1.52998 * 109.47535 * 239.99700 * 2 1 3
5 5 C 1.53001 * 109.47544 * 175.00212 * 4 2 1
6 6 C 1.53000 * 109.47026 * 179.97438 * 5 4 2
7 7 N 1.46497 * 109.46794 * 179.97438 * 6 5 4
8 8 C 1.36939 * 119.99870 * 180.02562 * 7 6 5
9 9 H 1.07999 * 120.00063 * 359.97438 * 8 7 6
10 10 C 1.38815 * 119.99969 * 179.97438 * 8 7 6
11 11 N 1.31613 * 119.99896 * 359.97438 * 10 8 7
12 12 Si 1.86800 * 120.00038 * 179.97438 * 10 8 7
13 13 H 1.48507 * 109.46947 * 359.97438 * 12 10 8
14 14 H 1.48500 * 109.47427 * 119.99811 * 12 10 8
15 15 H 1.48497 * 109.47098 * 240.00230 * 12 10 8
16 16 N 1.46508 * 109.47196 * 119.99793 * 2 1 3
17 17 C 1.34778 * 119.99452 * 275.00201 * 16 2 1
18 18 O 1.21279 * 120.00680 * 359.97438 * 17 16 2
19 19 C 1.50708 * 119.99670 * 179.97438 * 17 16 2
20 20 H 1.08995 * 115.54814 * 61.44780 * 19 17 16
21 21 C 1.52997 * 117.49658 * 207.15847 * 19 17 16
22 22 C 1.52994 * 117.49600 * 275.78098 * 19 17 16
23 23 H 1.09003 * 117.50100 * 145.02002 * 22 19 17
24 24 C 1.50707 * 117.50163 * 0.02562 * 22 19 17
25 25 N 1.34777 * 119.99676 * 84.35841 * 24 22 19
26 26 O 1.21274 * 119.99836 * 264.35414 * 24 22 19
27 27 H 1.08998 * 109.47260 * 300.00482 * 1 2 3
28 28 H 1.09000 * 109.46760 * 60.00314 * 1 2 3
29 29 H 1.08999 * 109.46838 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46824 * 294.99905 * 4 2 1
31 31 H 1.08994 * 109.46833 * 54.99649 * 4 2 1
32 32 H 1.08999 * 109.46889 * 300.00160 * 5 4 2
33 33 H 1.09000 * 109.46851 * 59.99731 * 5 4 2
34 34 H 1.08997 * 109.46914 * 299.99415 * 6 5 4
35 35 H 1.09003 * 109.47077 * 59.99843 * 6 5 4
36 36 H 0.97001 * 120.00368 * 359.97438 * 7 6 5
37 37 H 0.97006 * 119.99893 * 179.97438 * 11 10 8
38 38 H 0.96998 * 120.00186 * 95.00026 * 16 2 1
39 39 H 1.09005 * 117.49780 * 214.97487 * 21 19 17
40 40 H 1.08993 * 117.50172 * 0.02562 * 21 19 17
41 41 H 0.97000 * 120.00449 * 359.97438 * 25 24 22
42 42 H 0.96998 * 119.99477 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 3.5649 -0.6134 -1.3136
6 6 4.0750 -1.3353 -2.5624
7 7 5.5349 -1.2314 -2.6244
8 6 6.2187 -1.8056 -3.6626
9 1 5.6818 -2.3354 -4.4355
10 6 7.6021 -1.7067 -3.7217
11 7 8.2564 -1.0607 -2.7800
12 14 8.5350 -2.4906 -5.1375
13 1 7.5747 -3.1532 -6.0564
14 1 9.2853 -1.4433 -5.8761
15 1 9.4864 -3.4990 -4.6054
16 7 2.0184 -0.6906 1.1963
17 6 2.1470 -0.0181 2.3572
18 8 1.8590 1.1587 2.4115
19 6 2.6489 -0.7286 3.5879
20 1 3.6553 -1.1406 3.5153
21 6 2.2031 -0.1867 4.9475
22 6 1.6269 -1.5032 4.4224
23 1 1.9612 -2.4246 4.8992
24 6 0.1956 -1.4978 3.9505
25 7 -0.2096 -2.3820 3.0175
26 8 -0.5914 -0.6980 4.4104
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.7518 -1.7716 -1.2054
31 1 1.6055 -0.2619 -2.1368
32 1 3.8533 0.4369 -1.3573
33 1 3.9995 -1.0728 -0.4258
34 1 3.7867 -2.3855 -2.5182
35 1 3.6403 -0.8762 -3.4504
36 1 6.0172 -0.7552 -1.9304
37 1 9.2232 -0.9919 -2.8210
38 1 2.2491 -1.6317 1.1528
39 1 2.9165 -0.2420 5.7698
40 1 1.5467 0.6834 4.9518
41 1 0.4201 -3.0215 2.6494
42 1 -1.1307 -2.3782 2.7135
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485738734.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:53:33
Heat of formation + Delta-G solvation = -87.889345 kcal
Electronic energy + Delta-G solvation = -22305.163011 eV
Core-core repulsion = 18898.258722 eV
Total energy + Delta-G solvation = -3406.904289 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.58651 -40.17015 -38.13686 -36.94484 -36.42753 -34.59023 -34.15039 -32.51514
-30.85118 -27.25584 -26.30999 -25.25264 -24.55427 -22.39187 -21.79922 -21.61556
-20.85195 -19.13752 -18.97843 -17.96428 -17.46571 -17.09656 -16.83806 -16.57402
-15.85544 -15.60732 -15.41682 -15.25963 -15.11647 -14.90110 -14.40463 -14.18981
-13.83323 -13.44401 -13.20363 -13.04184 -12.99065 -12.80064 -12.39238 -12.22116
-12.05055 -11.88230 -11.81989 -11.68164 -11.60456 -11.48205 -11.13200 -10.93402
-10.87914 -10.67565 -10.09187 -8.99334 -7.95114 -5.24163 1.37631 1.48260
1.49214 1.57922 1.59304 2.08875 2.44753 2.56570 2.75726 3.39015
3.54638 3.63577 3.71957 3.84927 3.99175 4.10191 4.12100 4.28808
4.34549 4.40963 4.59099 4.68008 4.77098 4.81435 4.85410 4.87995
4.92413 5.00859 5.09776 5.13136 5.28031 5.39209 5.44834 5.52200
5.58334 5.85797 6.27771 6.42209 6.55369 7.25016 7.31375 7.33399
8.11011 8.32501 9.28821
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.025042 B = 0.003051 C = 0.002914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.836075 B = 9176.300762 C = 9605.756795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.144 3.856
3 H 0.056 0.944
4 C -0.106 4.106
5 C -0.113 4.113
6 C 0.150 3.850
7 N -0.751 5.751
8 C -0.245 4.245
9 H 0.077 0.923
10 C -0.078 4.078
11 N -0.971 5.971
12 Si 0.974 3.026
13 H -0.264 1.264
14 H -0.295 1.295
15 H -0.291 1.291
16 N -0.700 5.700
17 C 0.529 3.471
18 O -0.585 6.585
19 C -0.166 4.166
20 H 0.173 0.827
21 C -0.130 4.130
22 C -0.154 4.154
23 H 0.184 0.816
24 C 0.534 3.466
25 N -0.826 5.826
26 O -0.591 6.591
27 H 0.030 0.970
28 H 0.074 0.926
29 H 0.080 0.920
30 H 0.095 0.905
31 H 0.086 0.914
32 H 0.041 0.959
33 H 0.063 0.937
34 H 0.030 0.970
35 H 0.016 0.984
36 H 0.372 0.628
37 H 0.251 0.749
38 H 0.415 0.585
39 H 0.145 0.855
40 H 0.075 0.925
41 H 0.419 0.581
42 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.778 -7.073 12.794 22.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.040 3.960
3 H 0.074 0.926
4 C -0.144 4.144
5 C -0.151 4.151
6 C 0.024 3.976
7 N -0.393 5.393
8 C -0.377 4.377
9 H 0.095 0.905
10 C -0.270 4.270
11 N -0.622 5.622
12 Si 0.803 3.197
13 H -0.188 1.188
14 H -0.223 1.223
15 H -0.218 1.218
16 N -0.352 5.352
17 C 0.316 3.684
18 O -0.465 6.465
19 C -0.187 4.187
20 H 0.190 0.810
21 C -0.168 4.168
22 C -0.175 4.175
23 H 0.201 0.799
24 C 0.319 3.681
25 N -0.390 5.390
26 O -0.472 6.472
27 H 0.049 0.951
28 H 0.093 0.907
29 H 0.099 0.901
30 H 0.114 0.886
31 H 0.105 0.895
32 H 0.059 0.941
33 H 0.082 0.918
34 H 0.048 0.952
35 H 0.034 0.966
36 H 0.203 0.797
37 H 0.060 0.940
38 H 0.253 0.747
39 H 0.163 0.837
40 H 0.094 0.906
41 H 0.251 0.749
42 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges -17.364 -5.800 13.008 22.458
hybrid contribution 0.983 -0.365 -0.831 1.338
sum -16.381 -6.165 12.177 21.322
Atomic orbital electron populations
1.22059 0.94148 1.03169 1.01554 1.20927 0.94451 0.96420 0.84250
0.92563 1.21726 0.93566 1.02434 0.96714 1.21590 0.96413 0.99522
0.97527 1.20861 0.83071 0.97562 0.96116 1.42668 1.02617 1.65845
1.28217 1.19708 0.89992 1.26218 1.01795 0.90489 1.25602 0.97560
1.02461 1.01389 1.69828 1.07051 1.48837 1.36478 0.85060 0.78493
0.77351 0.78781 1.18849 1.22270 1.21838 1.45907 1.66117 1.14531
1.08641 1.20240 0.76556 0.86493 0.85148 1.90707 1.51653 1.18361
1.85743 1.22449 1.01548 1.04263 0.90456 0.80999 1.23040 1.02322
0.95621 0.95837 1.22488 0.89777 1.01025 1.04241 0.79922 1.20105
0.89485 0.79642 0.78841 1.43621 1.16431 1.36924 1.41994 1.90754
1.56888 1.40801 1.58721 0.95124 0.90659 0.90104 0.88644 0.89529
0.94057 0.91820 0.95220 0.96587 0.79685 0.94021 0.74746 0.83743
0.90620 0.74926 0.76182
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.76 9.48 71.98 0.68 -2.08 16
2 C 0.14 3.01 2.58 44.99 0.12 3.12 16
3 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16
4 C -0.11 -2.06 4.75 30.59 0.15 -1.92 16
5 C -0.11 -3.24 5.22 30.59 0.16 -3.08 16
6 C 0.15 5.58 6.26 86.38 0.54 6.12 16
7 N -0.75 -37.78 5.60 -343.45 -1.92 -39.70 16
8 C -0.25 -13.58 9.99 84.03 0.84 -12.74 16
9 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16
10 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16
11 N -0.97 -59.35 13.06 21.65 0.28 -59.06 16
12 Si 0.97 45.53 29.55 68.60 2.03 47.56 16
13 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16
14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16
15 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16
16 N -0.70 -12.76 4.53 -442.51 -2.00 -14.76 16
17 C 0.53 12.70 6.49 87.66 0.57 13.27 16
18 O -0.58 -20.54 16.26 -3.03 -0.05 -20.59 16
19 C -0.17 -2.60 6.18 -11.54 -0.07 -2.67 16
20 H 0.17 1.68 8.14 -2.39 -0.02 1.66 16
21 C -0.13 -2.26 9.56 30.59 0.29 -1.97 16
22 C -0.15 -1.95 6.17 -11.54 -0.07 -2.02 16
23 H 0.18 0.73 8.14 -2.39 -0.02 0.71 16
24 C 0.53 9.87 6.79 87.66 0.60 10.46 16
25 N -0.83 -7.77 8.87 -173.53 -1.54 -9.31 16
26 O -0.59 -17.81 17.44 -3.01 -0.05 -17.86 16
27 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16
28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
30 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16
31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.06 1.80 7.75 -2.39 -0.02 1.78 16
34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
35 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16
36 H 0.37 20.08 7.67 -92.71 -0.71 19.37 16
37 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16
38 H 0.42 4.85 8.60 -92.71 -0.80 4.05 16
39 H 0.14 1.55 8.14 -2.38 -0.02 1.53 16
40 H 0.08 1.96 7.71 -2.39 -0.02 1.94 16
41 H 0.42 1.04 8.83 -92.71 -0.82 0.22 16
42 H 0.41 3.60 8.93 -92.71 -0.83 2.77 16
Total: -1.00 -84.33 358.37 -1.09 -85.43
By element:
Atomic # 1 Polarization: 27.87 SS G_CDS: -2.10 Total: 25.78 kcal
Atomic # 6 Polarization: -1.74 SS G_CDS: 4.26 Total: 2.52 kcal
Atomic # 7 Polarization: -117.65 SS G_CDS: -5.19 Total: -122.84 kcal
Atomic # 8 Polarization: -38.35 SS G_CDS: -0.10 Total: -38.45 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal
Total: -84.33 -1.09 -85.43 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485738734.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.463 kcal
(2) G-P(sol) polarization free energy of solvation -84.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.889 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds