Wall clock time and date at job start Tue Mar 31 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21281 * 120.00036 * 2 1 4 4 N 1.34771 * 119.99718 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00301 * 0.02562 * 4 2 1 6 6 C 1.46506 * 119.99982 * 179.97438 * 4 2 1 7 7 C 1.50705 * 109.46631 * 90.00263 * 6 4 2 8 8 O 1.21281 * 120.00114 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99712 * 180.02562 * 7 6 4 10 10 C 1.47430 * 125.64924 * 359.68472 * 9 7 6 11 11 C 1.55129 * 104.72040 * 155.82047 * 10 9 7 12 12 H 1.09000 * 110.90449 * 155.27642 * 11 10 9 13 13 N 1.46492 * 111.19393 * 279.18992 * 11 10 9 14 14 C 1.36935 * 120.00592 * 267.18744 * 13 11 10 15 15 H 1.08007 * 119.99910 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00476 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46919 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46698 * 120.00759 * 18 16 14 21 21 H 1.48501 * 109.47207 * 240.00484 * 18 16 14 22 22 C 1.55157 * 101.48581 * 37.30058 * 11 10 9 23 23 C 1.47016 * 125.64737 * 180.02562 * 9 7 6 24 24 H 1.09000 * 109.88475 * 300.43562 * 23 9 7 25 25 C 1.53001 * 109.88621 * 61.60034 * 23 9 7 26 26 H 1.09001 * 109.46953 * 269.99693 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.99291 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.99921 * 1 2 3 29 29 H 1.08992 * 109.47528 * 90.00120 * 5 4 2 30 30 H 1.09000 * 109.47050 * 209.99820 * 5 4 2 31 31 H 1.08999 * 109.47194 * 329.99553 * 5 4 2 32 32 H 1.09000 * 109.47632 * 210.00024 * 6 4 2 33 33 H 1.09002 * 109.46984 * 330.00632 * 6 4 2 34 34 H 1.08996 * 110.36752 * 274.75317 * 10 9 7 35 35 H 1.08996 * 110.36488 * 37.07540 * 10 9 7 36 36 H 0.97008 * 119.99496 * 87.19057 * 13 11 10 37 37 H 0.97007 * 120.00041 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.71826 * 205.97133 * 22 11 10 39 39 H 1.08994 * 110.72057 * 82.69126 * 22 11 10 40 40 H 1.09000 * 109.47123 * 58.54677 * 25 23 9 41 41 H 1.08999 * 109.47211 * 178.54420 * 25 23 9 42 42 H 1.08996 * 109.46964 * 298.54896 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4484 -2.4359 -0.0017 6 6 3.6459 -1.1672 -0.0011 7 6 4.1487 -1.1677 1.4196 8 8 3.3609 -1.1683 2.3417 9 7 5.4739 -1.1673 1.6654 10 6 6.5372 -1.1730 0.6442 11 6 7.7700 -0.5557 1.3553 12 1 8.6963 -0.8893 0.8876 13 7 7.6920 0.9070 1.3761 14 6 8.2805 1.6384 0.3793 15 1 8.8020 1.1368 -0.4227 16 6 8.2061 3.0244 0.3987 17 7 7.5702 3.6356 1.3757 18 14 9.0097 4.0221 -0.9609 19 1 9.6564 3.1040 -1.9324 20 1 7.9775 4.8316 -1.6569 21 1 10.0334 4.9238 -0.3743 22 6 7.6270 -1.1408 2.7852 23 6 6.0984 -1.1681 2.9963 24 1 5.7854 -0.2850 3.5533 25 6 5.7006 -2.4346 3.7571 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.2671 -2.7499 -1.0295 30 1 2.0373 -3.1959 0.5119 31 1 0.4958 -2.3060 0.5120 32 1 4.0091 -2.0571 -0.5152 33 1 4.0091 -0.2771 -0.5148 34 1 6.7515 -2.1931 0.3255 35 1 6.2465 -0.5611 -0.2096 36 1 7.2233 1.3575 2.0962 37 1 7.5185 4.6042 1.3895 38 1 8.1060 -0.4908 3.5175 39 1 8.0406 -2.1481 2.8329 40 1 6.0117 -3.3119 3.1900 41 1 6.1876 -2.4408 4.7322 42 1 4.6190 -2.4533 3.8910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486102545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:34 Heat of formation + Delta-G solvation = -74.993477 kcal Electronic energy + Delta-G solvation = -23445.860872 eV Core-core repulsion = 20039.515791 eV Total energy + Delta-G solvation = -3406.345082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52396 -40.51074 -38.70058 -36.51149 -35.78537 -33.31440 -33.01012 -31.40613 -30.13964 -28.81589 -27.00455 -26.70237 -25.72235 -23.44899 -21.56303 -20.61414 -19.75189 -19.28576 -18.37622 -18.02242 -17.45706 -17.12443 -16.50567 -16.37741 -15.80071 -15.53065 -15.23859 -14.89985 -14.54987 -14.32643 -14.23872 -13.84736 -13.62879 -13.48608 -13.37814 -13.22570 -13.09991 -13.05637 -12.91469 -12.72864 -12.67666 -12.29071 -12.17157 -12.05420 -11.64877 -11.48577 -11.16461 -11.01877 -10.98080 -9.76302 -9.64850 -8.99308 -7.95086 -5.24483 1.43454 1.45704 1.47754 1.57097 1.61184 1.86964 2.29908 2.55413 3.36823 3.47753 3.66190 3.84697 3.90632 3.94846 4.10224 4.14125 4.24024 4.32729 4.37019 4.45292 4.48136 4.57989 4.69640 4.74023 4.75762 4.78204 4.87447 4.93787 5.02694 5.10148 5.17076 5.22173 5.30238 5.35670 5.52915 5.54515 6.25753 6.31172 6.59205 7.07747 7.17818 7.31461 8.07339 8.28677 9.29052 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.005668 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.624464 B = 4939.103389 C = 6308.972003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.495 3.505 3 O -0.607 6.607 4 N -0.603 5.603 5 C 0.076 3.924 6 C 0.103 3.897 7 C 0.505 3.495 8 O -0.581 6.581 9 N -0.601 5.601 10 C 0.074 3.926 11 C 0.154 3.846 12 H 0.094 0.906 13 N -0.728 5.728 14 C -0.234 4.234 15 H 0.090 0.910 16 C -0.082 4.082 17 N -0.975 5.975 18 Si 0.971 3.029 19 H -0.255 1.255 20 H -0.304 1.304 21 H -0.295 1.295 22 C -0.122 4.122 23 C 0.132 3.868 24 H 0.027 0.973 25 C -0.142 4.142 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.366 0.634 37 H 0.247 0.753 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.412 -20.340 -3.618 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.286 3.714 3 O -0.488 6.488 4 N -0.335 5.335 5 C -0.064 4.064 6 C -0.024 4.024 7 C 0.293 3.707 8 O -0.462 6.462 9 N -0.334 5.334 10 C -0.051 4.051 11 C 0.044 3.956 12 H 0.112 0.888 13 N -0.366 5.366 14 C -0.365 4.365 15 H 0.108 0.892 16 C -0.273 4.273 17 N -0.626 5.626 18 Si 0.801 3.199 19 H -0.178 1.178 20 H -0.232 1.232 21 H -0.223 1.223 22 C -0.161 4.161 23 C 0.029 3.971 24 H 0.045 0.955 25 C -0.200 4.200 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.197 0.803 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.485 -19.798 -3.333 22.204 hybrid contribution 0.186 1.704 0.004 1.714 sum -9.299 -18.094 -3.330 20.614 Atomic orbital electron populations 1.21938 0.87346 1.06704 1.05852 1.21935 0.92942 0.82531 0.73954 1.90771 1.72306 1.33626 1.52095 1.47721 1.05040 1.08174 1.72545 1.22130 0.97630 0.82890 1.03799 1.21274 0.82239 1.06045 0.92800 1.21270 0.81062 0.75618 0.92709 1.90596 1.55590 1.52551 1.47469 1.48567 1.04894 1.71211 1.08741 1.23427 0.88724 1.01681 0.91238 1.21747 0.96126 0.83022 0.94698 0.88808 1.42591 1.64468 1.01218 1.28336 1.19769 1.25465 0.88964 1.02347 0.89186 1.25627 1.02609 0.98238 1.00861 1.69868 1.49518 1.07875 1.35369 0.85097 0.77095 0.78819 0.78921 1.17824 1.23223 1.22259 1.23008 0.92493 1.03137 0.97414 1.21530 0.93869 0.97813 0.83929 0.95490 1.21979 1.01182 0.96258 1.00610 0.87962 0.88905 0.86034 0.89117 0.90765 0.89081 0.83473 0.89682 0.87444 0.92265 0.80295 0.94436 0.91106 0.86372 0.90482 0.90265 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.29 71.24 0.66 -2.35 16 2 C 0.50 15.81 7.78 87.66 0.68 16.49 16 3 O -0.61 -27.78 16.68 -3.03 -0.05 -27.83 16 4 N -0.60 -15.95 2.36 -851.11 -2.01 -17.96 16 5 C 0.08 1.09 9.85 127.77 1.26 2.35 16 6 C 0.10 3.05 4.89 85.63 0.42 3.47 16 7 C 0.51 18.42 7.71 87.66 0.68 19.09 16 8 O -0.58 -24.71 15.47 -3.03 -0.05 -24.76 16 9 N -0.60 -20.55 3.06 -787.60 -2.41 -22.97 16 10 C 0.07 2.27 6.41 86.93 0.56 2.82 16 11 C 0.15 5.38 3.72 46.46 0.17 5.56 16 12 H 0.09 2.95 8.09 -2.39 -0.02 2.93 16 13 N -0.73 -35.99 5.24 -316.03 -1.66 -37.65 16 14 C -0.23 -12.65 9.96 84.03 0.84 -11.81 16 15 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 16 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 17 N -0.98 -62.91 13.06 21.65 0.28 -62.63 16 18 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 19 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 C -0.12 -3.54 6.07 31.79 0.19 -3.35 16 23 C 0.13 4.38 3.45 45.35 0.16 4.53 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 C -0.14 -3.73 9.10 71.98 0.66 -3.08 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.12 1.23 6.63 -2.39 -0.02 1.21 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.05 8.07 -2.39 -0.02 1.03 16 31 H 0.09 1.01 6.53 -2.39 -0.02 1.00 16 32 H 0.15 2.86 8.07 -2.39 -0.02 2.84 16 33 H 0.09 3.09 7.13 -2.39 -0.02 3.07 16 34 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.07 7.48 -2.39 -0.02 2.05 16 36 H 0.37 20.77 7.87 -92.70 -0.73 20.04 16 37 H 0.25 15.60 8.31 -92.70 -0.77 14.83 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.12 2.44 7.85 -2.39 -0.02 2.42 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.04 1.29 6.88 -2.39 -0.02 1.27 16 Total: -1.00 -86.70 346.35 3.15 -83.55 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.28 Total: 31.76 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: 6.74 Total: 29.42 kcal Atomic # 7 Polarization: -135.41 SS G_CDS: -5.80 Total: -141.20 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.10 Total: -52.58 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -86.70 3.15 -83.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486102545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.553 kcal (2) G-P(sol) polarization free energy of solvation -86.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds