Wall clock time and date at job start Tue Mar 31 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47592 * 2 1 4 4 O 1.21282 * 119.99683 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00461 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00237 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.46949 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00072 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64829 * 359.69548 * 9 7 6 11 11 C 1.55125 * 104.72449 * 155.81461 * 10 9 7 12 12 H 1.08999 * 110.94326 * 155.28688 * 11 10 9 13 13 N 1.46507 * 111.19383 * 279.19536 * 11 10 9 14 14 C 1.36935 * 119.99497 * 267.18552 * 13 11 10 15 15 H 1.08002 * 120.00688 * 359.97438 * 14 13 11 16 16 C 1.38818 * 119.99934 * 179.97438 * 14 13 11 17 17 N 1.31613 * 119.99898 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46806 * 90.00013 * 18 16 14 20 20 H 1.48497 * 109.46902 * 210.00355 * 18 16 14 21 21 H 1.48498 * 109.46832 * 330.00197 * 18 16 14 22 22 C 1.55158 * 101.48650 * 37.29406 * 11 10 9 23 23 C 1.47023 * 125.65057 * 179.97438 * 9 7 6 24 24 H 1.09004 * 109.88182 * 300.59829 * 23 9 7 25 25 C 1.52995 * 109.88046 * 61.60754 * 23 9 7 26 26 H 1.09000 * 109.46870 * 59.99930 * 1 2 3 27 27 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47108 * 300.00035 * 1 2 3 29 29 H 1.08996 * 109.47261 * 239.99681 * 2 1 3 30 30 H 1.09004 * 109.47368 * 120.00065 * 2 1 3 31 31 H 0.97010 * 119.99854 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.46609 * 60.00363 * 6 5 3 33 33 H 1.09000 * 109.47175 * 300.00158 * 6 5 3 34 34 H 1.09002 * 110.36522 * 274.74335 * 10 9 7 35 35 H 1.09002 * 110.36472 * 37.06987 * 10 9 7 36 36 H 0.96995 * 120.00570 * 87.18367 * 13 11 10 37 37 H 0.97004 * 119.99923 * 179.97438 * 17 16 14 38 38 H 1.08997 * 110.72173 * 205.97408 * 22 11 10 39 39 H 1.08997 * 110.71940 * 82.69323 * 22 11 10 40 40 H 1.08999 * 109.47440 * 58.54647 * 25 23 9 41 41 H 1.09000 * 109.47627 * 178.54984 * 25 23 9 42 42 H 1.09006 * 109.47155 * 298.54695 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0482 0.0011 7 6 5.3529 3.0481 0.0010 8 8 5.9592 1.9978 0.0009 9 7 6.0268 4.2153 0.0009 10 6 5.4190 5.5584 -0.0054 11 6 6.5005 6.4836 0.6117 12 1 6.3691 7.5129 0.2782 13 7 6.4939 6.4036 2.0745 14 6 5.7504 7.2913 2.8054 15 1 5.1691 8.0507 2.3035 16 6 5.7437 7.2152 4.1915 17 7 6.4524 6.2902 4.8031 18 14 4.7299 8.4268 5.1885 19 1 3.3672 7.8758 5.3996 20 1 5.3817 8.6530 6.5035 21 1 4.6352 9.7144 4.4549 22 6 7.8008 5.8714 0.0271 23 6 7.4899 4.3600 0.0013 24 1 7.9099 3.8775 0.8839 25 6 8.0754 3.7301 -1.2641 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9878 0.9297 0.0005 32 1 3.4822 3.5617 0.8912 33 1 3.4828 3.5624 -0.8889 34 1 5.1902 5.8665 -1.0257 35 1 4.5169 5.5695 0.6065 36 1 7.0162 5.7218 2.5254 37 1 6.4481 6.2372 5.7717 38 1 8.6509 6.0789 0.6771 39 1 7.9840 6.2450 -0.9803 40 1 7.6454 4.2119 -2.1422 41 1 9.1571 3.8637 -1.2695 42 1 7.8407 2.6658 -1.2821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486107148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:23 Heat of formation + Delta-G solvation = -89.974067 kcal Electronic energy + Delta-G solvation = -22809.656790 eV Core-core repulsion = 19402.662101 eV Total energy + Delta-G solvation = -3406.994689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51492 -40.56687 -38.86682 -35.87865 -35.53954 -33.76581 -33.25640 -32.84882 -30.17131 -29.01394 -26.73751 -25.73716 -25.03687 -23.18628 -21.50712 -21.41049 -20.04286 -19.28996 -18.58641 -17.89022 -17.22330 -17.10630 -16.83835 -16.39669 -15.95690 -15.62923 -15.33236 -14.93194 -14.74378 -14.69312 -14.29389 -13.94878 -13.59779 -13.46863 -13.23779 -13.16037 -13.09405 -12.90266 -12.70730 -12.64423 -12.27920 -12.20633 -12.08122 -12.03535 -11.64652 -11.48292 -11.12396 -11.02962 -10.92725 -10.29932 -9.71911 -8.99785 -7.94994 -5.23697 1.42612 1.48122 1.49284 1.56952 1.58479 1.70416 2.35696 2.55744 3.30831 3.37917 3.74538 3.82083 3.87408 3.93524 4.12048 4.18237 4.20836 4.28215 4.30332 4.38178 4.47784 4.70155 4.72627 4.75878 4.77649 4.94224 4.99186 5.06036 5.10430 5.15451 5.19990 5.22588 5.35104 5.37212 5.46739 5.55281 6.26441 6.42883 6.48691 6.97345 7.15580 7.33372 8.08335 8.29606 9.28267 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.012442 B = 0.004937 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.990247 B = 5669.656165 C = 7353.549453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.506 3.494 4 O -0.586 6.586 5 N -0.715 5.715 6 C 0.110 3.890 7 C 0.523 3.477 8 O -0.573 6.573 9 N -0.595 5.595 10 C 0.072 3.928 11 C 0.156 3.844 12 H 0.090 0.910 13 N -0.726 5.726 14 C -0.237 4.237 15 H 0.085 0.915 16 C -0.074 4.074 17 N -0.970 5.970 18 Si 0.967 3.033 19 H -0.294 1.294 20 H -0.300 1.300 21 H -0.264 1.264 22 C -0.123 4.123 23 C 0.134 3.866 24 H 0.044 0.956 25 C -0.147 4.147 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.417 0.583 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -8.997 -15.381 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.295 3.705 4 O -0.466 6.466 5 N -0.370 5.370 6 C -0.017 4.017 7 C 0.311 3.689 8 O -0.454 6.454 9 N -0.327 5.327 10 C -0.054 4.054 11 C 0.046 3.954 12 H 0.108 0.892 13 N -0.364 5.364 14 C -0.369 4.369 15 H 0.103 0.897 16 C -0.266 4.266 17 N -0.621 5.621 18 Si 0.797 3.203 19 H -0.221 1.221 20 H -0.227 1.227 21 H -0.188 1.188 22 C -0.162 4.162 23 C 0.031 3.969 24 H 0.062 0.938 25 C -0.205 4.205 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.256 0.744 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.202 0.798 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.674 -8.770 -15.335 18.044 hybrid contribution 0.025 0.093 1.444 1.447 sum -3.649 -8.677 -13.891 16.780 Atomic orbital electron populations 1.21545 0.93053 1.02839 1.01960 1.21702 0.98394 0.90654 1.06758 1.21648 0.81024 0.93535 0.74333 1.90695 1.56180 1.48256 1.51441 1.45825 1.07960 1.07958 1.75258 1.20907 0.90246 0.86090 1.04486 1.20231 0.89787 0.82764 0.76107 1.90614 1.70452 1.31375 1.52973 1.48439 1.07782 1.05982 1.70502 1.23455 0.98497 0.81846 1.01572 1.21693 0.92890 0.97616 0.83188 0.89211 1.42533 1.55630 1.37257 1.00980 1.19692 1.19875 1.08297 0.89023 0.89691 1.25509 1.02170 1.00928 0.97998 1.69823 1.46608 1.37705 1.07971 0.85232 0.77701 0.79344 0.78052 1.22135 1.22724 1.18809 1.23020 0.98093 0.91980 1.03103 1.21591 0.79515 0.97390 0.98413 0.93807 1.22027 1.01700 1.00582 0.96186 0.93117 0.89271 0.93799 0.86007 0.86825 0.74434 0.90006 0.87465 0.88225 0.92006 0.79829 0.94288 0.90563 0.86792 0.91117 0.89970 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.20 71.98 0.66 -1.64 16 2 C -0.14 -2.20 6.42 29.85 0.19 -2.01 16 3 C 0.51 13.22 7.83 87.66 0.69 13.90 16 4 O -0.59 -20.24 15.98 -3.04 -0.05 -20.29 16 5 N -0.71 -18.63 5.53 -466.78 -2.58 -21.21 16 6 C 0.11 3.24 5.16 85.63 0.44 3.68 16 7 C 0.52 16.97 7.71 87.66 0.68 17.65 16 8 O -0.57 -20.61 14.70 -3.03 -0.04 -20.66 16 9 N -0.60 -18.59 3.06 -787.61 -2.41 -21.00 16 10 C 0.07 2.12 6.41 86.93 0.56 2.68 16 11 C 0.16 5.20 3.72 46.46 0.17 5.37 16 12 H 0.09 2.77 8.09 -2.39 -0.02 2.75 16 13 N -0.73 -33.72 5.24 -316.00 -1.66 -35.37 16 14 C -0.24 -12.33 9.96 84.04 0.84 -11.49 16 15 H 0.09 4.14 7.83 -2.91 -0.02 4.11 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 17 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 18 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 C -0.12 -3.31 6.07 31.78 0.19 -3.12 16 23 C 0.13 3.96 3.45 45.34 0.16 4.12 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 C -0.15 -3.50 9.10 71.98 0.66 -2.84 16 26 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.04 0.90 8.10 -2.38 -0.02 0.88 16 29 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.42 9.83 7.44 -92.70 -0.69 9.14 16 32 H 0.08 2.75 7.85 -2.39 -0.02 2.73 16 33 H 0.11 2.83 8.14 -2.39 -0.02 2.82 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 35 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 36 H 0.37 19.33 7.86 -92.71 -0.73 18.60 16 37 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.11 2.22 7.85 -2.39 -0.02 2.21 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 1.31 6.88 -2.38 -0.02 1.29 16 Total: -1.00 -71.22 348.05 0.87 -70.35 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.40 Total: 36.73 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 5.70 Total: 22.65 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -6.37 Total: -136.13 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.09 Total: -40.95 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.22 0.87 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486107148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.624 kcal (2) G-P(sol) polarization free energy of solvation -71.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds