Wall clock time and date at job start Tue Mar 31 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47549 * 2 1 4 4 H 1.08995 * 109.47019 * 54.99959 * 3 2 1 5 5 C 1.52995 * 109.47436 * 175.00333 * 3 2 1 6 6 N 1.46492 * 109.47305 * 174.99841 * 5 3 2 7 7 C 1.34785 * 119.99891 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00221 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99897 * 179.97438 * 7 6 5 10 10 H 1.09008 * 110.43416 * 302.54895 * 9 7 6 11 11 C 1.54618 * 110.48553 * 180.02562 * 9 7 6 12 12 C 1.54480 * 101.76574 * 265.98805 * 11 9 7 13 13 N 1.46766 * 105.47089 * 334.58387 * 12 11 9 14 14 C 1.46500 * 124.34988 * 196.74972 * 13 12 11 15 15 C 1.34413 * 111.30232 * 17.01742 * 13 12 11 16 16 O 1.21284 * 124.94565 * 179.56847 * 15 13 12 17 17 N 1.46511 * 109.46907 * 295.00361 * 3 2 1 18 18 C 1.36930 * 120.00367 * 84.99887 * 17 3 2 19 19 H 1.08006 * 119.99585 * 359.97438 * 18 17 3 20 20 C 1.38803 * 120.00277 * 179.97438 * 18 17 3 21 21 N 1.31619 * 120.00108 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00270 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46924 * 89.99963 * 22 20 18 24 24 H 1.48497 * 109.47229 * 210.00328 * 22 20 18 25 25 H 1.48501 * 109.46778 * 330.00379 * 22 20 18 26 26 H 1.09003 * 109.46549 * 300.00321 * 1 2 3 27 27 H 1.09000 * 109.47038 * 59.99641 * 1 2 3 28 28 H 1.08992 * 109.47692 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46549 * 239.99679 * 2 1 3 30 30 H 1.09000 * 109.47038 * 120.00359 * 2 1 3 31 31 H 1.09001 * 109.47117 * 54.99404 * 5 3 2 32 32 H 1.09005 * 109.47016 * 294.99912 * 5 3 2 33 33 H 0.97002 * 120.00331 * 0.02562 * 6 5 3 34 34 H 1.09003 * 110.97396 * 147.86940 * 11 9 7 35 35 H 1.08997 * 111.00455 * 24.12068 * 11 9 7 36 36 H 1.09008 * 110.24751 * 215.58603 * 12 11 9 37 37 H 1.08998 * 110.32145 * 93.62416 * 12 11 9 38 38 H 1.08999 * 109.47196 * 89.99909 * 14 13 12 39 39 H 1.08997 * 109.47154 * 210.00067 * 14 13 12 40 40 H 1.09002 * 109.47147 * 329.99855 * 14 13 12 41 41 H 0.97003 * 119.99148 * 264.99560 * 17 3 2 42 42 H 0.97003 * 120.00386 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5649 1.4442 0.1256 6 7 4.0631 2.8166 0.0058 7 6 5.3859 3.0628 0.0867 8 8 6.1636 2.1481 0.2581 9 6 5.8985 4.4745 -0.0372 10 1 5.5839 4.9119 -0.9848 11 6 7.4394 4.5035 0.0867 12 6 7.6290 4.7902 1.5928 13 7 6.4071 5.4843 2.0160 14 6 6.2806 6.2530 3.2567 15 6 5.4171 5.3191 1.1220 16 8 4.3003 5.7798 1.2290 17 7 1.6525 2.0975 -1.2519 18 6 0.4157 2.6735 -1.3689 19 1 -0.2741 2.6446 -0.5384 20 6 0.0487 3.2945 -2.5547 21 7 0.8892 3.3293 -3.5670 22 14 -1.6387 4.0798 -2.7146 23 1 -1.5671 5.4989 -2.2832 24 1 -2.0831 4.0144 -4.1300 25 1 -2.6073 3.3501 -1.8574 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9954 0.8309 -0.6660 32 1 3.8500 1.0376 1.0960 33 1 3.4411 3.5483 -0.1309 34 1 7.8646 5.3036 -0.5192 35 1 7.8713 3.5401 -0.1843 36 1 8.4987 5.4287 1.7487 37 1 7.7431 3.8571 2.1444 38 1 6.5593 7.2903 3.0714 39 1 5.2492 6.2109 3.6067 40 1 6.9392 5.8297 4.0152 41 1 2.2720 2.1231 -1.9978 42 1 0.6326 3.7630 -4.3959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495041572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:20 Heat of formation + Delta-G solvation = -62.940946 kcal Electronic energy + Delta-G solvation = -23112.288026 eV Core-core repulsion = 19706.465581 eV Total energy + Delta-G solvation = -3405.822445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94749 -38.81985 -36.82073 -36.29503 -33.69122 -32.91822 -32.31134 -29.76651 -28.67116 -27.28945 -26.84095 -23.90495 -22.90953 -21.87257 -20.50166 -20.00543 -19.35236 -17.73447 -17.10485 -16.82571 -15.78375 -15.65477 -15.46923 -14.99282 -14.52217 -14.00680 -13.95143 -13.61071 -13.51473 -13.15368 -13.02030 -12.83395 -12.74817 -12.55524 -12.40223 -12.09797 -11.58134 -11.44630 -11.33419 -10.93000 -10.83245 -10.72059 -10.41736 -10.16407 -10.02893 -9.93622 -9.62668 -9.49621 -8.91797 -8.86105 -8.65161 -6.99440 -5.77271 -3.06081 2.34546 2.70961 2.98127 3.44401 3.50166 3.50984 3.55661 4.18841 4.31683 4.58836 4.69718 4.92187 5.04940 5.06306 5.24899 5.32900 5.42812 5.47849 5.49637 5.52809 5.58932 5.72945 5.89565 5.94834 5.97641 5.98708 6.15294 6.32794 6.44924 6.56024 6.60493 6.62064 6.88499 6.89808 7.04476 7.27236 7.71282 7.87932 8.05122 8.39952 8.47096 9.52269 10.06272 10.42403 11.44857 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.004725 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.927070 B = 5924.754487 C = 6643.799947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.115 3.885 6 N -0.701 5.701 7 C 0.529 3.471 8 O -0.548 6.548 9 C -0.151 4.151 10 H 0.135 0.865 11 C -0.117 4.117 12 C 0.103 3.897 13 N -0.624 5.624 14 C 0.097 3.903 15 C 0.527 3.473 16 O -0.511 6.511 17 N -0.720 5.720 18 C -0.235 4.235 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.903 3.097 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.282 1.282 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.952 2.102 10.815 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.352 5.352 7 C 0.313 3.687 8 O -0.427 6.427 9 C -0.175 4.175 10 H 0.152 0.848 11 C -0.155 4.155 12 C -0.020 4.020 13 N -0.359 5.359 14 C -0.045 4.045 15 C 0.313 3.687 16 O -0.385 6.385 17 N -0.363 5.363 18 C -0.366 4.366 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.734 3.266 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.255 0.745 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.219 0.781 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.682 1.817 11.091 17.706 hybrid contribution -1.022 0.820 -0.499 1.402 sum 12.660 2.636 10.592 16.716 Atomic orbital electron populations 1.21768 0.95692 0.99591 1.03315 1.22063 0.97014 0.98323 0.99961 1.20567 0.89826 0.92863 0.91557 0.92826 1.21712 0.95866 0.82350 1.01062 1.46011 1.06970 1.11269 1.70970 1.19620 0.82940 0.89116 0.77055 1.90648 1.56037 1.45531 1.50497 1.22154 0.98690 0.95433 1.01263 0.84768 1.22565 0.92563 1.05071 0.95294 1.22142 0.86940 0.97200 0.95676 1.48128 1.13611 1.52267 1.21930 1.21538 1.03341 0.94999 0.84582 1.20347 0.84471 0.80110 0.83808 1.90804 1.19661 1.50661 1.77379 1.42428 1.16824 1.65835 1.11168 1.19201 0.91852 1.27641 0.97949 0.90919 1.24712 0.98092 1.01494 0.96388 1.69656 1.35240 1.49009 1.03971 0.86256 0.84124 0.79445 0.76773 1.21718 1.21903 1.20768 0.94134 0.89614 0.94890 0.92501 0.93902 0.91593 0.91903 0.74512 0.89379 0.87216 0.90201 0.90595 0.92502 0.90576 0.91020 0.78126 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.18 37.16 0.34 -2.34 16 2 C -0.13 -2.34 5.61 -26.73 -0.15 -2.49 16 3 C 0.16 3.13 2.59 -67.93 -0.18 2.95 16 4 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 2.01 5.23 -4.05 -0.02 1.99 16 6 N -0.70 -12.49 5.37 -60.30 -0.32 -12.81 16 7 C 0.53 8.75 7.17 -10.98 -0.08 8.67 16 8 O -0.55 -9.88 15.47 5.56 0.09 -9.79 16 9 C -0.15 -2.05 3.32 -91.78 -0.30 -2.35 16 10 H 0.13 1.75 8.14 -51.92 -0.42 1.32 16 11 C -0.12 -1.15 6.50 -25.10 -0.16 -1.32 16 12 C 0.10 0.93 7.35 -3.12 -0.02 0.91 16 13 N -0.62 -7.21 3.33 -180.28 -0.60 -7.81 16 14 C 0.10 0.88 10.97 59.85 0.66 1.53 16 15 C 0.53 7.89 7.32 -10.86 -0.08 7.81 16 16 O -0.51 -9.62 17.59 5.55 0.10 -9.52 16 17 N -0.72 -16.94 4.51 -53.43 -0.24 -17.18 16 18 C -0.24 -6.17 7.75 -15.07 -0.12 -6.29 16 19 H 0.07 1.88 7.32 -52.48 -0.38 1.49 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 22 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.42 8.12 8.14 -40.82 -0.33 7.78 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.15 6.96 -51.93 -0.36 0.79 16 36 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -31.95 346.90 -7.01 -38.96 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -6.75 Total: 13.71 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.21 Total: 8.67 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.44 Total: -64.37 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.95 -7.01 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495041572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.982 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds