Wall clock time and date at job start Tue Mar 31 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46830 * 2 1 4 4 H 1.09002 * 109.47544 * 54.99846 * 3 2 1 5 5 C 1.53004 * 109.46864 * 175.00034 * 3 2 1 6 6 N 1.46507 * 109.46980 * 174.99955 * 5 3 2 7 7 C 1.34775 * 119.99612 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00577 * 359.97438 * 7 6 5 9 9 C 1.50709 * 119.99676 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.43619 * 57.45648 * 9 7 6 11 11 C 1.54625 * 110.48500 * 179.97438 * 9 7 6 12 12 C 1.54483 * 101.76352 * 93.87994 * 11 9 7 13 13 N 1.46759 * 105.47551 * 25.41679 * 12 11 9 14 14 C 1.46494 * 124.35107 * 162.98286 * 13 12 11 15 15 C 1.34423 * 111.29786 * 342.98185 * 13 12 11 16 16 O 1.21286 * 124.93710 * 180.41109 * 15 13 12 17 17 N 1.46499 * 109.47258 * 294.99595 * 3 2 1 18 18 C 1.36935 * 119.99926 * 85.00376 * 17 3 2 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 3 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 3 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99247 * 22 20 18 24 24 H 1.48496 * 109.47375 * 209.99772 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99467 * 22 20 18 26 26 H 1.08995 * 109.47401 * 300.00097 * 1 2 3 27 27 H 1.09000 * 109.47057 * 60.00278 * 1 2 3 28 28 H 1.09009 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47088 * 239.99585 * 2 1 3 30 30 H 1.09000 * 109.47057 * 119.99722 * 2 1 3 31 31 H 1.08996 * 109.47116 * 294.99243 * 5 3 2 32 32 H 1.08992 * 109.47265 * 54.99911 * 5 3 2 33 33 H 0.96995 * 119.99766 * 359.97438 * 6 5 3 34 34 H 1.09001 * 110.96697 * 211.99640 * 11 9 7 35 35 H 1.09000 * 110.97359 * 335.75990 * 11 9 7 36 36 H 1.09005 * 110.24370 * 144.41746 * 12 11 9 37 37 H 1.09003 * 110.24523 * 266.32311 * 12 11 9 38 38 H 1.09003 * 109.47048 * 89.99873 * 14 13 12 39 39 H 1.08996 * 109.47221 * 209.99588 * 14 13 12 40 40 H 1.09000 * 109.47473 * 330.00107 * 14 13 12 41 41 H 0.97005 * 120.00261 * 265.00500 * 17 3 2 42 42 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0629 0.0858 8 8 6.1634 2.1484 0.2573 9 6 5.8982 4.4748 -0.0380 10 1 5.4428 5.1128 0.7194 11 6 7.4392 4.5038 0.0860 12 6 7.8756 4.4356 -1.3944 13 7 6.7519 4.9882 -2.1598 14 6 6.8442 5.4495 -3.5471 15 6 5.6272 5.0167 -1.4241 16 8 4.5517 5.4185 -1.8150 17 7 1.6524 2.0974 -1.2518 18 6 0.4156 2.6734 -1.3689 19 1 -0.2743 2.6445 -0.5384 20 6 0.0505 3.2989 -2.5530 21 7 0.8932 3.3388 -3.5632 22 14 -1.6364 4.0853 -2.7125 23 1 -1.5651 5.5028 -2.2757 24 1 -2.0787 4.0253 -4.1288 25 1 -2.6066 3.3528 -1.8595 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8498 1.0378 1.0960 32 1 3.9953 0.8311 -0.6658 33 1 3.4409 3.5483 -0.1316 34 1 7.7758 5.4312 0.5495 35 1 7.8024 3.6383 0.6400 36 1 8.7711 5.0368 -1.5517 37 1 8.0601 3.4016 -1.6859 38 1 6.6276 4.6204 -4.2208 39 1 6.1231 6.2499 -3.7126 40 1 7.8505 5.8212 -3.7404 41 1 2.2719 2.1231 -1.9978 42 1 0.6383 3.7762 -4.3907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495041573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:22 Heat of formation + Delta-G solvation = -60.665112 kcal Electronic energy + Delta-G solvation = -23351.318848 eV Core-core repulsion = 19945.595091 eV Total energy + Delta-G solvation = -3405.723757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83753 -38.75016 -36.75982 -36.15403 -33.66806 -32.80798 -32.26641 -29.72974 -28.60768 -27.21872 -26.68807 -23.85942 -22.85949 -21.82633 -20.42747 -19.97799 -19.24259 -17.69587 -17.01168 -16.68488 -15.72581 -15.60068 -15.23947 -15.14439 -14.31781 -13.99634 -13.84652 -13.56293 -13.37274 -13.14100 -12.92896 -12.73583 -12.59840 -12.52856 -12.24690 -12.07674 -11.55415 -11.37620 -11.30718 -10.90314 -10.80008 -10.69621 -10.40020 -10.14740 -9.98067 -9.82888 -9.54659 -9.45474 -8.86763 -8.67473 -8.64081 -6.93733 -5.70514 -2.99992 2.45967 2.85380 3.11263 3.46715 3.51547 3.53508 3.57278 4.26320 4.38441 4.62451 4.74402 4.98805 5.11602 5.22575 5.36114 5.41506 5.44747 5.51891 5.55137 5.62123 5.75238 5.77438 5.92919 5.96777 5.98933 6.00117 6.16630 6.46731 6.51196 6.57252 6.61227 6.63199 6.89796 7.05546 7.09056 7.29072 7.74797 7.89431 8.25081 8.45122 8.48600 9.57426 10.12395 10.47658 11.50980 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.005677 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.010953 B = 4931.171315 C = 6318.537967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.114 3.886 6 N -0.702 5.702 7 C 0.528 3.472 8 O -0.548 6.548 9 C -0.150 4.150 10 H 0.129 0.871 11 C -0.117 4.117 12 C 0.104 3.896 13 N -0.624 5.624 14 C 0.098 3.902 15 C 0.521 3.479 16 O -0.493 6.493 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.282 1.282 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.385 0.615 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.179 1.886 6.755 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.352 5.352 7 C 0.312 3.688 8 O -0.427 6.427 9 C -0.174 4.174 10 H 0.147 0.853 11 C -0.155 4.155 12 C -0.019 4.019 13 N -0.360 5.360 14 C -0.043 4.043 15 C 0.306 3.694 16 O -0.366 6.366 17 N -0.362 5.362 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.254 0.746 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.219 0.781 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.935 1.555 6.571 15.485 hybrid contribution -1.014 0.773 -0.570 1.396 sum 12.922 2.328 6.001 14.436 Atomic orbital electron populations 1.21767 0.95694 0.99548 1.03320 1.22072 0.97012 0.98405 0.99907 1.20558 0.89748 0.92863 0.91609 0.92882 1.21720 0.95934 0.82351 1.01032 1.46012 1.07011 1.11297 1.70928 1.19663 0.82913 0.89224 0.77046 1.90647 1.56047 1.45462 1.50591 1.22137 0.99456 0.97193 0.98655 0.85321 1.22559 0.91805 1.04651 0.96443 1.22100 0.89289 0.99575 0.90968 1.48062 1.10923 1.63514 1.13528 1.21532 1.02267 1.00236 0.80283 1.20291 0.83954 0.78568 0.86606 1.90906 1.24519 1.45806 1.75353 1.42419 1.16820 1.65784 1.11130 1.19143 0.91842 1.28134 0.98025 0.91010 1.24730 0.97905 1.01325 0.96524 1.69665 1.34926 1.48316 1.04102 0.86281 0.84208 0.79450 0.76765 1.21779 1.21949 1.20824 0.94146 0.89592 0.94945 0.92588 0.93920 0.91702 0.91868 0.74565 0.89535 0.87409 0.90348 0.90727 0.92399 0.90491 0.91242 0.78102 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.18 37.16 0.34 -2.33 16 2 C -0.13 -2.36 5.61 -26.73 -0.15 -2.51 16 3 C 0.16 3.13 2.59 -67.93 -0.18 2.96 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.11 2.01 5.23 -4.04 -0.02 1.99 16 6 N -0.70 -12.51 5.37 -60.29 -0.32 -12.83 16 7 C 0.53 8.77 7.16 -10.98 -0.08 8.69 16 8 O -0.55 -9.96 15.47 5.56 0.09 -9.87 16 9 C -0.15 -2.04 3.33 -91.78 -0.31 -2.34 16 10 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 11 C -0.12 -1.17 6.50 -25.10 -0.16 -1.33 16 12 C 0.10 1.05 7.34 -3.12 -0.02 1.03 16 13 N -0.62 -8.39 3.33 -180.29 -0.60 -8.99 16 14 C 0.10 1.14 10.96 59.84 0.66 1.80 16 15 C 0.52 8.64 7.31 -10.86 -0.08 8.56 16 16 O -0.49 -10.59 17.60 5.55 0.10 -10.49 16 17 N -0.72 -17.30 4.51 -53.43 -0.24 -17.54 16 18 C -0.24 -6.40 7.75 -15.06 -0.12 -6.51 16 19 H 0.07 1.86 7.32 -52.48 -0.38 1.47 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -28.00 13.06 55.49 0.72 -27.28 16 22 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 28 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.42 8.09 8.14 -40.82 -0.33 7.75 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.12 6.96 -51.93 -0.36 0.76 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -33.22 346.91 -7.01 -40.23 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.75 Total: 14.40 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.21 Total: 9.68 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -0.44 Total: -66.63 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.36 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.22 -7.01 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495041573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.433 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds