Wall clock time and date at job start Tue Mar 31 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46830 * 2 1 4 4 H 1.09002 * 109.47544 * 54.99846 * 3 2 1 5 5 C 1.53004 * 109.46864 * 175.00034 * 3 2 1 6 6 N 1.46507 * 109.46980 * 174.99955 * 5 3 2 7 7 C 1.34775 * 119.99612 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00577 * 359.97438 * 7 6 5 9 9 C 1.50709 * 119.99676 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.43619 * 57.45648 * 9 7 6 11 11 C 1.54625 * 110.48500 * 179.97438 * 9 7 6 12 12 C 1.54483 * 101.76352 * 93.87994 * 11 9 7 13 13 N 1.46759 * 105.47551 * 25.41679 * 12 11 9 14 14 C 1.46494 * 124.35107 * 162.98286 * 13 12 11 15 15 C 1.34423 * 111.29786 * 342.98185 * 13 12 11 16 16 O 1.21286 * 124.93710 * 180.41109 * 15 13 12 17 17 N 1.46499 * 109.47258 * 294.99595 * 3 2 1 18 18 C 1.36935 * 119.99926 * 85.00376 * 17 3 2 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 3 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 3 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99247 * 22 20 18 24 24 H 1.48496 * 109.47375 * 209.99772 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99467 * 22 20 18 26 26 H 1.08995 * 109.47401 * 300.00097 * 1 2 3 27 27 H 1.09000 * 109.47057 * 60.00278 * 1 2 3 28 28 H 1.09009 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47088 * 239.99585 * 2 1 3 30 30 H 1.09000 * 109.47057 * 119.99722 * 2 1 3 31 31 H 1.08996 * 109.47116 * 294.99243 * 5 3 2 32 32 H 1.08992 * 109.47265 * 54.99911 * 5 3 2 33 33 H 0.96995 * 119.99766 * 359.97438 * 6 5 3 34 34 H 1.09001 * 110.96697 * 211.99640 * 11 9 7 35 35 H 1.09000 * 110.97359 * 335.75990 * 11 9 7 36 36 H 1.09005 * 110.24370 * 144.41746 * 12 11 9 37 37 H 1.09003 * 110.24523 * 266.32311 * 12 11 9 38 38 H 1.09003 * 109.47048 * 89.99873 * 14 13 12 39 39 H 1.08996 * 109.47221 * 209.99588 * 14 13 12 40 40 H 1.09000 * 109.47473 * 330.00107 * 14 13 12 41 41 H 0.97005 * 120.00261 * 265.00500 * 17 3 2 42 42 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0629 0.0858 8 8 6.1634 2.1484 0.2573 9 6 5.8982 4.4748 -0.0380 10 1 5.4428 5.1128 0.7194 11 6 7.4392 4.5038 0.0860 12 6 7.8756 4.4356 -1.3944 13 7 6.7519 4.9882 -2.1598 14 6 6.8442 5.4495 -3.5471 15 6 5.6272 5.0167 -1.4241 16 8 4.5517 5.4185 -1.8150 17 7 1.6524 2.0974 -1.2518 18 6 0.4156 2.6734 -1.3689 19 1 -0.2743 2.6445 -0.5384 20 6 0.0505 3.2989 -2.5530 21 7 0.8932 3.3388 -3.5632 22 14 -1.6364 4.0853 -2.7125 23 1 -1.5651 5.5028 -2.2757 24 1 -2.0787 4.0253 -4.1288 25 1 -2.6066 3.3528 -1.8595 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8498 1.0378 1.0960 32 1 3.9953 0.8311 -0.6658 33 1 3.4409 3.5483 -0.1316 34 1 7.7758 5.4312 0.5495 35 1 7.8024 3.6383 0.6400 36 1 8.7711 5.0368 -1.5517 37 1 8.0601 3.4016 -1.6859 38 1 6.6276 4.6204 -4.2208 39 1 6.1231 6.2499 -3.7126 40 1 7.8505 5.8212 -3.7404 41 1 2.2719 2.1231 -1.9978 42 1 0.6383 3.7762 -4.3907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495041573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:21 Heat of formation + Delta-G solvation = -85.639400 kcal Electronic energy + Delta-G solvation = -23352.401814 eV Core-core repulsion = 19945.595091 eV Total energy + Delta-G solvation = -3406.806724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.02048 -40.09543 -38.33341 -37.43788 -35.24627 -34.18181 -33.76556 -31.51258 -29.99364 -28.50595 -27.70889 -25.65936 -24.36577 -22.99151 -21.73729 -21.44776 -20.49527 -19.31070 -18.62736 -17.82299 -17.06368 -17.00681 -16.69469 -16.44736 -15.94124 -15.51913 -15.23015 -14.78003 -14.73434 -14.61657 -14.49686 -14.12945 -13.80365 -13.74464 -13.49259 -13.21449 -13.00015 -12.81570 -12.75210 -12.44427 -12.32266 -12.16471 -12.09991 -11.87081 -11.64169 -11.34021 -11.17633 -10.93191 -10.82497 -10.06432 -9.75408 -8.96887 -7.86515 -5.13782 1.16959 1.46784 1.48458 1.55673 1.59948 2.05894 2.28494 2.59337 3.24971 3.42603 3.47332 3.70367 3.89195 3.93403 4.02853 4.20174 4.33632 4.37422 4.43728 4.46963 4.55931 4.59951 4.67627 4.72021 4.82746 4.86087 5.00625 5.08503 5.12081 5.14110 5.20249 5.43734 5.52450 5.56232 5.59945 5.73168 5.99678 6.32074 6.47604 7.03810 7.10487 7.39513 8.12550 8.36026 9.36257 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.005677 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.010953 B = 4931.171315 C = 6318.537967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.162 3.838 4 H 0.058 0.942 5 C 0.122 3.878 6 N -0.710 5.710 7 C 0.526 3.474 8 O -0.563 6.563 9 C -0.147 4.147 10 H 0.148 0.852 11 C -0.105 4.105 12 C 0.098 3.902 13 N -0.621 5.621 14 C 0.092 3.908 15 C 0.508 3.492 16 O -0.558 6.558 17 N -0.727 5.727 18 C -0.217 4.217 19 H 0.081 0.919 20 C -0.076 4.076 21 N -0.965 5.965 22 Si 0.960 3.040 23 H -0.294 1.294 24 H -0.303 1.303 25 H -0.266 1.266 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.408 0.592 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.369 0.631 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.682 1.644 8.877 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.076 0.924 5 C -0.003 4.003 6 N -0.360 5.360 7 C 0.311 3.689 8 O -0.443 6.443 9 C -0.171 4.171 10 H 0.165 0.835 11 C -0.142 4.142 12 C -0.023 4.023 13 N -0.355 5.355 14 C -0.049 4.049 15 C 0.294 3.706 16 O -0.436 6.436 17 N -0.367 5.367 18 C -0.349 4.349 19 H 0.099 0.901 20 C -0.268 4.268 21 N -0.616 5.616 22 Si 0.791 3.209 23 H -0.222 1.222 24 H -0.230 1.230 25 H -0.190 1.190 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.244 0.756 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.200 0.800 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.489 1.267 8.756 17.837 hybrid contribution -1.386 0.760 -1.156 1.958 sum 14.103 2.026 7.600 16.148 Atomic orbital electron populations 1.21694 0.95964 1.00604 1.01748 1.21971 0.96658 0.97043 1.01107 1.20765 0.91052 0.93506 0.89385 0.92417 1.21639 0.94464 0.82439 1.01730 1.46116 1.07587 1.10958 1.71317 1.20135 0.82218 0.90415 0.76130 1.90632 1.56125 1.46339 1.51241 1.22213 1.02358 0.95127 0.97428 0.83478 1.22661 0.88470 1.06566 0.96546 1.22398 0.89490 0.99880 0.90561 1.48320 1.11065 1.62062 1.14054 1.21686 1.04410 0.99385 0.79394 1.20840 0.83756 0.78002 0.87981 1.90867 1.26983 1.48885 1.76836 1.42555 1.15756 1.66134 1.12297 1.19483 0.92409 1.25538 0.97489 0.90095 1.25445 1.01162 1.03409 0.96834 1.69837 1.36777 1.50569 1.04460 0.85320 0.81011 0.78364 0.76196 1.22208 1.22989 1.19048 0.93180 0.93483 0.92707 0.93725 0.90270 0.89242 0.93278 0.75572 0.85920 0.87342 0.86073 0.91492 0.93416 0.92326 0.86736 0.80001 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.18 71.98 0.66 -4.31 16 2 C -0.13 -4.27 5.61 30.59 0.17 -4.10 16 3 C 0.16 6.08 2.59 44.99 0.12 6.20 16 4 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 5 C 0.12 4.18 5.23 86.38 0.45 4.63 16 6 N -0.71 -25.30 5.37 -463.05 -2.49 -27.78 16 7 C 0.53 17.09 7.16 87.66 0.63 17.72 16 8 O -0.56 -19.74 15.47 -3.02 -0.05 -19.78 16 9 C -0.15 -3.82 3.33 -11.55 -0.04 -3.85 16 10 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 11 C -0.10 -1.76 6.50 31.65 0.21 -1.55 16 12 C 0.10 1.71 7.34 86.83 0.64 2.34 16 13 N -0.62 -16.04 3.33 -842.90 -2.81 -18.84 16 14 C 0.09 2.09 10.96 127.77 1.40 3.49 16 15 C 0.51 16.96 7.31 87.90 0.64 17.61 16 16 O -0.56 -25.14 17.60 -3.05 -0.05 -25.19 16 17 N -0.73 -35.55 4.51 -322.94 -1.46 -37.00 16 18 C -0.22 -11.68 7.75 84.03 0.65 -11.03 16 19 H 0.08 4.14 7.32 -2.91 -0.02 4.12 16 20 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 21 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 22 Si 0.96 47.32 29.55 68.60 2.03 49.35 16 23 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 2.00 5.99 -2.39 -0.01 1.99 16 28 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 16.20 8.14 -92.71 -0.75 15.45 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.90 6.96 -2.39 -0.02 1.88 16 36 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.55 7.93 -2.39 -0.02 1.53 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.37 20.42 7.80 -92.70 -0.72 19.70 16 42 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -75.59 346.91 1.00 -74.59 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.45 Total: 42.23 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 5.99 Total: 23.18 kcal Atomic # 7 Polarization: -137.91 SS G_CDS: -6.47 Total: -144.38 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.10 Total: -44.98 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -75.59 1.00 -74.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495041573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.054 kcal (2) G-P(sol) polarization free energy of solvation -75.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds