Wall clock time and date at job start Tue Mar 31 2020 02:16:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53006 * 109.46875 * 2 1
4 4 H 1.09007 * 109.46919 * 305.00101 * 3 2 1
5 5 C 1.52997 * 109.47139 * 185.00377 * 3 2 1
6 6 N 1.46503 * 109.46942 * 185.00095 * 5 3 2
7 7 C 1.34777 * 119.99538 * 179.97438 * 6 5 3
8 8 O 1.21284 * 120.00413 * 0.02562 * 7 6 5
9 9 C 1.50701 * 119.99670 * 179.97438 * 7 6 5
10 10 H 1.09002 * 110.43685 * 300.70482 * 9 7 6
11 11 C 1.54627 * 110.59756 * 178.08483 * 9 7 6
12 12 C 1.54486 * 101.76521 * 266.06529 * 11 9 7
13 13 N 1.46757 * 105.47179 * 334.58397 * 12 11 9
14 14 C 1.46496 * 124.34964 * 197.03594 * 13 12 11
15 15 C 1.34422 * 111.30497 * 17.01651 * 13 12 11
16 16 O 1.21273 * 124.94668 * 179.62647 * 15 13 12
17 17 N 1.46497 * 109.47022 * 65.00100 * 3 2 1
18 18 C 1.36941 * 119.99936 * 274.99816 * 17 3 2
19 19 H 1.07999 * 120.00255 * 0.02562 * 18 17 3
20 20 C 1.38814 * 119.99681 * 179.97438 * 18 17 3
21 21 N 1.31618 * 120.00383 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 119.99695 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47278 * 60.00353 * 22 20 18
24 24 H 1.48500 * 109.47067 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47573 * 300.00052 * 22 20 18
26 26 H 1.09000 * 109.46673 * 300.00033 * 1 2 3
27 27 H 1.08998 * 109.47134 * 60.00054 * 1 2 3
28 28 H 1.08997 * 109.46597 * 180.02562 * 1 2 3
29 29 H 1.08991 * 109.47112 * 240.00341 * 2 1 3
30 30 H 1.08998 * 109.47605 * 119.99697 * 2 1 3
31 31 H 1.08998 * 109.47097 * 64.99874 * 5 3 2
32 32 H 1.09001 * 109.46975 * 304.99463 * 5 3 2
33 33 H 0.96996 * 120.00141 * 359.97438 * 6 5 3
34 34 H 1.08999 * 110.97081 * 24.18268 * 11 9 7
35 35 H 1.09001 * 110.97124 * 147.95030 * 11 9 7
36 36 H 1.09001 * 110.24549 * 215.58460 * 12 11 9
37 37 H 1.09001 * 110.24385 * 93.58651 * 12 11 9
38 38 H 1.09004 * 109.47396 * 180.02562 * 14 13 12
39 39 H 1.09003 * 109.47128 * 300.00312 * 14 13 12
40 40 H 1.08997 * 109.47463 * 60.00421 * 14 13 12
41 41 H 0.96994 * 119.99977 * 95.00586 * 17 3 2
42 42 H 0.96996 * 120.00238 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6053 1.9816 -0.8419
5 6 3.5648 1.4445 -0.1258
6 7 4.0629 2.8170 -0.0060
7 6 5.3856 3.0631 -0.0860
8 8 6.1635 2.1485 -0.2575
9 6 5.8980 4.4751 0.0367
10 1 5.4674 5.1052 -0.7415
11 6 7.4423 4.5018 -0.0382
12 6 7.8310 4.4529 1.4562
13 7 6.6838 5.0161 2.1777
14 6 6.7320 5.4959 3.5610
15 6 5.5832 5.0354 1.4062
16 8 4.4963 5.4434 1.7567
17 7 1.6524 2.0975 1.2518
18 6 0.4156 2.6735 1.3688
19 1 -0.2743 2.6446 0.5384
20 6 0.0482 3.2936 2.5551
21 7 0.8887 3.3284 3.5674
22 14 -1.6388 4.0799 2.7145
23 1 -2.6871 3.0484 2.5093
24 1 -1.7835 4.6707 4.0692
25 1 -1.7866 5.1462 1.6916
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3632 -1.0277 0.0005
29 1 1.8934 -0.5137 -0.8899
30 1 1.8935 -0.5138 0.8900
31 1 3.8498 1.0379 -1.0961
32 1 3.9954 0.8313 0.6658
33 1 3.4409 3.5485 0.1308
34 1 7.8222 3.6288 -0.5688
35 1 7.7944 5.4227 -0.5028
36 1 8.7215 5.0557 1.6342
37 1 8.0036 3.4226 1.7675
38 1 5.7478 5.8622 3.8531
39 1 7.0251 4.6780 4.2193
40 1 7.4590 6.3042 3.6401
41 1 2.2719 2.1232 1.9977
42 1 0.6319 3.7614 4.3964
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001495041574.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:16:24
Heat of formation + Delta-G solvation = -60.862625 kcal
Electronic energy + Delta-G solvation = -23367.230038 eV
Core-core repulsion = 19961.497716 eV
Total energy + Delta-G solvation = -3405.732322 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.84060 -38.75271 -36.76233 -36.15576 -33.66798 -32.80598 -32.26534 -29.73059
-28.60732 -27.21574 -26.68052 -23.85921 -22.85941 -21.82334 -20.42374 -19.97475
-19.24304 -17.69892 -17.01211 -16.69084 -15.72930 -15.60038 -15.25251 -15.14142
-14.31784 -14.00830 -13.84745 -13.56681 -13.36049 -13.14014 -12.93229 -12.75340
-12.59329 -12.53618 -12.17397 -12.07109 -11.56065 -11.37577 -11.30508 -10.89399
-10.80600 -10.69192 -10.40181 -10.15713 -9.99587 -9.83478 -9.55184 -9.45385
-8.86376 -8.68018 -8.64222 -6.93880 -5.70552 -2.99971 2.46162 2.84991
3.11377 3.46825 3.51603 3.52668 3.56876 4.26594 4.38438 4.62465
4.74306 4.98974 5.11899 5.30503 5.34166 5.41403 5.44808 5.51275
5.52918 5.62276 5.75447 5.79380 5.92984 5.96669 5.98869 6.00110
6.16550 6.46663 6.50995 6.57213 6.61137 6.63205 6.89762 7.05507
7.09471 7.28949 7.74286 7.89388 8.24663 8.45210 8.48569 9.57435
10.12337 10.47631 11.50958
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.015392 B = 0.005726 C = 0.004453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.720807 B = 4888.531405 C = 6285.733319
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.133 4.133
3 C 0.163 3.837
4 H 0.053 0.947
5 C 0.114 3.886
6 N -0.702 5.702
7 C 0.528 3.472
8 O -0.548 6.548
9 C -0.150 4.150
10 H 0.129 0.871
11 C -0.117 4.117
12 C 0.104 3.896
13 N -0.624 5.624
14 C 0.095 3.905
15 C 0.521 3.479
16 O -0.494 6.494
17 N -0.719 5.719
18 C -0.241 4.241
19 H 0.071 0.929
20 C -0.008 4.008
21 N -0.924 5.924
22 Si 0.902 3.098
23 H -0.287 1.287
24 H -0.293 1.293
25 H -0.286 1.286
26 H 0.085 0.915
27 H 0.040 0.960
28 H 0.031 0.969
29 H 0.042 0.958
30 H 0.055 0.945
31 H 0.065 0.935
32 H 0.063 0.937
33 H 0.417 0.583
34 H 0.108 0.892
35 H 0.086 0.914
36 H 0.078 0.922
37 H 0.074 0.926
38 H 0.086 0.914
39 H 0.061 0.939
40 H 0.059 0.941
41 H 0.385 0.615
42 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.033 1.900 -6.548 15.602
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.174 4.174
3 C 0.052 3.948
4 H 0.071 0.929
5 C -0.010 4.010
6 N -0.353 5.353
7 C 0.312 3.688
8 O -0.427 6.427
9 C -0.174 4.174
10 H 0.147 0.853
11 C -0.155 4.155
12 C -0.020 4.020
13 N -0.360 5.360
14 C -0.046 4.046
15 C 0.306 3.694
16 O -0.367 6.367
17 N -0.361 5.361
18 C -0.372 4.372
19 H 0.089 0.911
20 C -0.204 4.204
21 N -0.571 5.571
22 Si 0.734 3.266
23 H -0.214 1.214
24 H -0.218 1.218
25 H -0.213 1.213
26 H 0.104 0.896
27 H 0.059 0.941
28 H 0.051 0.949
29 H 0.061 0.939
30 H 0.074 0.926
31 H 0.083 0.917
32 H 0.081 0.919
33 H 0.255 0.745
34 H 0.126 0.874
35 H 0.105 0.895
36 H 0.097 0.903
37 H 0.093 0.907
38 H 0.105 0.895
39 H 0.079 0.921
40 H 0.077 0.923
41 H 0.219 0.781
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 13.785 1.583 -6.381 15.273
hybrid contribution -1.012 0.764 0.560 1.386
sum 12.773 2.347 -5.821 14.232
Atomic orbital electron populations
1.21767 0.95700 0.99560 1.03311 1.22074 0.97010 0.98409 0.99907
1.20559 0.89752 0.92856 0.91617 0.92883 1.21720 0.95933 0.82348
1.01035 1.46017 1.07013 1.11305 1.70935 1.19658 0.82920 0.89217
0.77049 1.90649 1.56050 1.45453 1.50598 1.22138 0.99333 0.97102
0.98877 0.85294 1.22559 0.91922 1.04727 0.96259 1.22087 0.88898
0.99398 0.91569 1.48048 1.11272 1.62949 1.13701 1.21557 1.03799
0.98942 0.80339 1.20314 0.84113 0.78561 0.86402 1.90898 1.23156
1.46026 1.76609 1.42407 1.16792 1.65793 1.11131 1.19101 0.91823
1.28331 0.97920 0.91062 1.24725 0.97902 1.01351 0.96468 1.69651
1.35025 1.48528 1.03876 0.86352 0.84310 0.79241 0.76736 1.21385
1.21849 1.21325 0.89602 0.94132 0.94940 0.93918 0.92590 0.91701
0.91862 0.74531 0.87366 0.89528 0.90323 0.90742 0.89517 0.92065
0.92274 0.78112 0.93559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.68 9.18 37.16 0.34 -2.33 16
2 C -0.13 -2.36 5.61 -26.72 -0.15 -2.51 16
3 C 0.16 3.13 2.59 -67.93 -0.18 2.96 16
4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16
5 C 0.11 2.01 5.23 -4.04 -0.02 1.99 16
6 N -0.70 -12.51 5.34 -60.29 -0.32 -12.83 16
7 C 0.53 8.76 7.18 -10.98 -0.08 8.68 16
8 O -0.55 -9.96 15.47 5.55 0.09 -9.87 16
9 C -0.15 -2.04 3.32 -91.78 -0.30 -2.34 16
10 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16
11 C -0.12 -1.17 6.52 -25.10 -0.16 -1.33 16
12 C 0.10 1.06 7.35 -3.12 -0.02 1.04 16
13 N -0.62 -8.41 3.33 -180.29 -0.60 -9.01 16
14 C 0.10 1.12 11.14 59.84 0.67 1.78 16
15 C 0.52 8.62 7.29 -10.86 -0.08 8.54 16
16 O -0.49 -10.53 17.31 5.56 0.10 -10.44 16
17 N -0.72 -17.28 4.51 -53.42 -0.24 -17.52 16
18 C -0.24 -6.40 7.75 -15.06 -0.12 -6.52 16
19 H 0.07 1.84 7.32 -52.49 -0.38 1.46 16
20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16
21 N -0.92 -27.95 13.06 55.49 0.72 -27.23 16
22 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16
23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
26 H 0.09 1.87 5.99 -51.93 -0.31 1.55 16
27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16
31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
33 H 0.42 8.11 8.10 -40.82 -0.33 7.78 16
34 H 0.11 1.13 6.94 -51.93 -0.36 0.76 16
35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
38 H 0.09 1.21 7.53 -51.93 -0.39 0.82 16
39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.38 10.26 7.80 -40.82 -0.32 9.94 16
42 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16
LS Contribution 346.34 15.07 5.22 5.22
Total: -1.00 -32.99 346.34 -6.99 -39.97
By element:
Atomic # 1 Polarization: 21.34 SS G_CDS: -6.72 Total: 14.62 kcal
Atomic # 6 Polarization: 9.84 SS G_CDS: -0.20 Total: 9.64 kcal
Atomic # 7 Polarization: -66.15 SS G_CDS: -0.44 Total: -66.59 kcal
Atomic # 8 Polarization: -20.49 SS G_CDS: 0.18 Total: -20.31 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -32.99 -6.99 -39.97 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001495041574.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.890 kcal
(2) G-P(sol) polarization free energy of solvation -32.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.863 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds