Wall clock time and date at job start Tue Mar 31 2020 02:16:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53006 * 109.46875 * 2 1
4 4 H 1.09007 * 109.46919 * 305.00101 * 3 2 1
5 5 C 1.52997 * 109.47139 * 185.00377 * 3 2 1
6 6 N 1.46503 * 109.46942 * 185.00095 * 5 3 2
7 7 C 1.34777 * 119.99538 * 179.97438 * 6 5 3
8 8 O 1.21284 * 120.00413 * 0.02562 * 7 6 5
9 9 C 1.50701 * 119.99670 * 179.97438 * 7 6 5
10 10 H 1.09002 * 110.43685 * 300.70482 * 9 7 6
11 11 C 1.54627 * 110.59756 * 178.08483 * 9 7 6
12 12 C 1.54486 * 101.76521 * 266.06529 * 11 9 7
13 13 N 1.46757 * 105.47179 * 334.58397 * 12 11 9
14 14 C 1.46496 * 124.34964 * 197.03594 * 13 12 11
15 15 C 1.34422 * 111.30497 * 17.01651 * 13 12 11
16 16 O 1.21273 * 124.94668 * 179.62647 * 15 13 12
17 17 N 1.46497 * 109.47022 * 65.00100 * 3 2 1
18 18 C 1.36941 * 119.99936 * 274.99816 * 17 3 2
19 19 H 1.07999 * 120.00255 * 0.02562 * 18 17 3
20 20 C 1.38814 * 119.99681 * 179.97438 * 18 17 3
21 21 N 1.31618 * 120.00383 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 119.99695 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47278 * 60.00353 * 22 20 18
24 24 H 1.48500 * 109.47067 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47573 * 300.00052 * 22 20 18
26 26 H 1.09000 * 109.46673 * 300.00033 * 1 2 3
27 27 H 1.08998 * 109.47134 * 60.00054 * 1 2 3
28 28 H 1.08997 * 109.46597 * 180.02562 * 1 2 3
29 29 H 1.08991 * 109.47112 * 240.00341 * 2 1 3
30 30 H 1.08998 * 109.47605 * 119.99697 * 2 1 3
31 31 H 1.08998 * 109.47097 * 64.99874 * 5 3 2
32 32 H 1.09001 * 109.46975 * 304.99463 * 5 3 2
33 33 H 0.96996 * 120.00141 * 359.97438 * 6 5 3
34 34 H 1.08999 * 110.97081 * 24.18268 * 11 9 7
35 35 H 1.09001 * 110.97124 * 147.95030 * 11 9 7
36 36 H 1.09001 * 110.24549 * 215.58460 * 12 11 9
37 37 H 1.09001 * 110.24385 * 93.58651 * 12 11 9
38 38 H 1.09004 * 109.47396 * 180.02562 * 14 13 12
39 39 H 1.09003 * 109.47128 * 300.00312 * 14 13 12
40 40 H 1.08997 * 109.47463 * 60.00421 * 14 13 12
41 41 H 0.96994 * 119.99977 * 95.00586 * 17 3 2
42 42 H 0.96996 * 120.00238 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6053 1.9816 -0.8419
5 6 3.5648 1.4445 -0.1258
6 7 4.0629 2.8170 -0.0060
7 6 5.3856 3.0631 -0.0860
8 8 6.1635 2.1485 -0.2575
9 6 5.8980 4.4751 0.0367
10 1 5.4674 5.1052 -0.7415
11 6 7.4423 4.5018 -0.0382
12 6 7.8310 4.4529 1.4562
13 7 6.6838 5.0161 2.1777
14 6 6.7320 5.4959 3.5610
15 6 5.5832 5.0354 1.4062
16 8 4.4963 5.4434 1.7567
17 7 1.6524 2.0975 1.2518
18 6 0.4156 2.6735 1.3688
19 1 -0.2743 2.6446 0.5384
20 6 0.0482 3.2936 2.5551
21 7 0.8887 3.3284 3.5674
22 14 -1.6388 4.0799 2.7145
23 1 -2.6871 3.0484 2.5093
24 1 -1.7835 4.6707 4.0692
25 1 -1.7866 5.1462 1.6916
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3632 -1.0277 0.0005
29 1 1.8934 -0.5137 -0.8899
30 1 1.8935 -0.5138 0.8900
31 1 3.8498 1.0379 -1.0961
32 1 3.9954 0.8313 0.6658
33 1 3.4409 3.5485 0.1308
34 1 7.8222 3.6288 -0.5688
35 1 7.7944 5.4227 -0.5028
36 1 8.7215 5.0557 1.6342
37 1 8.0036 3.4226 1.7675
38 1 5.7478 5.8622 3.8531
39 1 7.0251 4.6780 4.2193
40 1 7.4590 6.3042 3.6401
41 1 2.2719 2.1232 1.9977
42 1 0.6319 3.7614 4.3964
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001495041574.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:16:23
Heat of formation + Delta-G solvation = -85.565338 kcal
Electronic energy + Delta-G solvation = -23368.301229 eV
Core-core repulsion = 19961.497716 eV
Total energy + Delta-G solvation = -3406.803512 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.02102 -40.09523 -38.33286 -37.43475 -35.24412 -34.18022 -33.76399 -31.51209
-29.99266 -28.50324 -27.70335 -25.65666 -24.36596 -22.98967 -21.73431 -21.44164
-20.49254 -19.31091 -18.62771 -17.82410 -17.06058 -17.01136 -16.69293 -16.44393
-15.95090 -15.51761 -15.22885 -14.78047 -14.73713 -14.60380 -14.50237 -14.12795
-13.79931 -13.74348 -13.47954 -13.19740 -12.98914 -12.80131 -12.74468 -12.45637
-12.33017 -12.17461 -12.11990 -11.88303 -11.64198 -11.33952 -11.17533 -10.92583
-10.82048 -10.06437 -9.74213 -8.96675 -7.86326 -5.13510 1.17822 1.46874
1.49480 1.54531 1.59819 2.05996 2.28334 2.59496 3.24329 3.42873
3.47331 3.70337 3.89259 3.93477 4.01990 4.20753 4.33504 4.37356
4.44151 4.46929 4.55934 4.62285 4.67532 4.72031 4.83591 4.86067
5.00663 5.08445 5.11911 5.13992 5.20182 5.43746 5.52100 5.56171
5.59748 5.72996 6.00022 6.32263 6.47685 7.03936 7.10716 7.39753
8.12782 8.36304 9.36300
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.015392 B = 0.005726 C = 0.004453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.720807 B = 4888.531405 C = 6285.733319
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.127 4.127
3 C 0.161 3.839
4 H 0.057 0.943
5 C 0.122 3.878
6 N -0.710 5.710
7 C 0.526 3.474
8 O -0.563 6.563
9 C -0.147 4.147
10 H 0.148 0.852
11 C -0.105 4.105
12 C 0.098 3.902
13 N -0.621 5.621
14 C 0.090 3.910
15 C 0.508 3.492
16 O -0.558 6.558
17 N -0.727 5.727
18 C -0.219 4.219
19 H 0.081 0.919
20 C -0.076 4.076
21 N -0.965 5.965
22 Si 0.961 3.039
23 H -0.277 1.277
24 H -0.304 1.304
25 H -0.281 1.281
26 H 0.046 0.954
27 H 0.049 0.951
28 H 0.054 0.946
29 H 0.079 0.921
30 H 0.044 0.956
31 H 0.089 0.911
32 H 0.049 0.951
33 H 0.409 0.591
34 H 0.109 0.891
35 H 0.122 0.878
36 H 0.120 0.880
37 H 0.067 0.933
38 H 0.054 0.946
39 H 0.072 0.928
40 H 0.096 0.904
41 H 0.369 0.631
42 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.547 1.682 -8.590 17.842
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.168 4.168
3 C 0.053 3.947
4 H 0.075 0.925
5 C -0.003 4.003
6 N -0.360 5.360
7 C 0.311 3.689
8 O -0.443 6.443
9 C -0.171 4.171
10 H 0.166 0.834
11 C -0.142 4.142
12 C -0.023 4.023
13 N -0.355 5.355
14 C -0.051 4.051
15 C 0.295 3.705
16 O -0.436 6.436
17 N -0.367 5.367
18 C -0.351 4.351
19 H 0.098 0.902
20 C -0.268 4.268
21 N -0.616 5.616
22 Si 0.791 3.209
23 H -0.203 1.203
24 H -0.231 1.231
25 H -0.208 1.208
26 H 0.065 0.935
27 H 0.069 0.931
28 H 0.073 0.927
29 H 0.097 0.903
30 H 0.063 0.937
31 H 0.107 0.893
32 H 0.068 0.932
33 H 0.244 0.756
34 H 0.127 0.873
35 H 0.141 0.859
36 H 0.138 0.862
37 H 0.085 0.915
38 H 0.073 0.927
39 H 0.090 0.910
40 H 0.115 0.885
41 H 0.200 0.800
42 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 15.350 1.322 -8.481 17.587
hybrid contribution -1.387 0.746 1.126 1.936
sum 13.962 2.069 -7.356 15.916
Atomic orbital electron populations
1.21694 0.95979 1.00602 1.01742 1.21973 0.96649 0.97049 1.01107
1.20765 0.91066 0.93496 0.89390 0.92465 1.21639 0.94453 0.82442
1.01738 1.46120 1.07593 1.10959 1.71331 1.20130 0.82215 0.90410
0.76127 1.90635 1.56126 1.46331 1.51252 1.22213 1.02144 0.95006
0.97740 0.83427 1.22659 0.88650 1.06605 0.96329 1.22375 0.88966
0.99683 0.91281 1.48309 1.11514 1.61598 1.14119 1.21699 1.03102
1.00530 0.79819 1.20845 0.83860 0.78062 0.87772 1.90860 1.25616
1.49066 1.78031 1.42538 1.15726 1.66153 1.12293 1.19445 0.92402
1.25803 0.97416 0.90159 1.25439 1.01151 1.03421 0.96763 1.69825
1.36843 1.50751 1.04201 0.85395 0.80982 0.78554 0.75950 1.20322
1.23079 1.20769 0.93516 0.93147 0.92716 0.90272 0.93719 0.89260
0.93232 0.75555 0.87312 0.85926 0.86199 0.91475 0.92691 0.90975
0.88547 0.79990 0.94727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.98 9.18 71.98 0.66 -4.32 16
2 C -0.13 -4.28 5.61 30.60 0.17 -4.11 16
3 C 0.16 6.09 2.59 44.99 0.12 6.21 16
4 H 0.06 2.14 8.08 -2.38 -0.02 2.12 16
5 C 0.12 4.18 5.23 86.38 0.45 4.63 16
6 N -0.71 -25.31 5.34 -463.05 -2.47 -27.78 16
7 C 0.53 17.07 7.18 87.66 0.63 17.70 16
8 O -0.56 -19.71 15.47 -3.04 -0.05 -19.76 16
9 C -0.15 -3.80 3.32 -11.55 -0.04 -3.84 16
10 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16
11 C -0.10 -1.77 6.52 31.65 0.21 -1.56 16
12 C 0.10 1.73 7.35 86.84 0.64 2.36 16
13 N -0.62 -16.08 3.33 -842.91 -2.81 -18.89 16
14 C 0.09 2.05 11.14 127.77 1.42 3.47 16
15 C 0.51 16.91 7.29 87.90 0.64 17.55 16
16 O -0.56 -24.98 17.31 -3.01 -0.05 -25.03 16
17 N -0.73 -35.54 4.51 -322.93 -1.46 -37.00 16
18 C -0.22 -11.77 7.75 84.03 0.65 -11.12 16
19 H 0.08 4.11 7.32 -2.91 -0.02 4.09 16
20 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16
21 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16
22 Si 0.96 47.30 29.55 68.60 2.03 49.33 16
23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
24 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16
25 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16
26 H 0.05 1.99 5.99 -2.39 -0.01 1.98 16
27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16
29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16
31 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
33 H 0.41 16.25 8.10 -92.71 -0.75 15.50 16
34 H 0.11 1.91 6.94 -2.39 -0.02 1.90 16
35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16
36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16
37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
38 H 0.05 1.61 7.53 -2.38 -0.02 1.60 16
39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
41 H 0.37 20.40 7.80 -92.71 -0.72 19.67 16
42 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16
Total: -1.00 -74.94 346.34 1.05 -73.89
By element:
Atomic # 1 Polarization: 43.21 SS G_CDS: -0.45 Total: 42.76 kcal
Atomic # 6 Polarization: 17.05 SS G_CDS: 6.02 Total: 23.07 kcal
Atomic # 7 Polarization: -137.80 SS G_CDS: -6.45 Total: -144.26 kcal
Atomic # 8 Polarization: -44.70 SS G_CDS: -0.10 Total: -44.80 kcal
Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal
Total: -74.94 1.05 -73.89 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001495041574.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.671 kcal
(2) G-P(sol) polarization free energy of solvation -74.940 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.612 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.565 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds