Wall clock time and date at job start Tue Mar 31 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.09008 * 109.46793 * 54.99972 * 3 2 1 5 5 C 1.53000 * 109.46776 * 174.99584 * 3 2 1 6 6 N 1.46499 * 109.46840 * 174.99842 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.53004 * 110.43395 * 300.70277 * 9 7 6 11 11 C 1.54628 * 110.48602 * 178.15933 * 9 7 6 12 12 C 1.54824 * 101.60651 * 266.07929 * 11 9 7 13 13 N 1.46767 * 105.49602 * 334.56834 * 12 11 9 14 14 C 1.34422 * 111.29880 * 17.03469 * 13 12 11 15 15 O 1.21284 * 124.94232 * 179.62522 * 14 13 12 16 16 N 1.46496 * 109.47348 * 294.99912 * 3 2 1 17 17 C 1.36941 * 120.00198 * 84.99697 * 16 3 2 18 18 H 1.07996 * 119.99379 * 0.02562 * 17 16 3 19 19 C 1.38810 * 119.99828 * 180.02562 * 17 16 3 20 20 N 1.31618 * 119.99768 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00221 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47022 * 89.99596 * 21 19 17 23 23 H 1.48501 * 109.47153 * 209.99829 * 21 19 17 24 24 H 1.48500 * 109.47069 * 329.99978 * 21 19 17 25 25 H 1.08999 * 109.47547 * 300.00062 * 1 2 3 26 26 H 1.09005 * 109.47093 * 60.00026 * 1 2 3 27 27 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47094 * 239.99657 * 2 1 3 29 29 H 1.09004 * 109.46831 * 119.99499 * 2 1 3 30 30 H 1.09002 * 109.47398 * 295.00168 * 5 3 2 31 31 H 1.09001 * 109.47194 * 55.00349 * 5 3 2 32 32 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 33 33 H 1.08999 * 109.47040 * 59.29678 * 10 9 7 34 34 H 1.08997 * 109.46762 * 179.30073 * 10 9 7 35 35 H 1.09001 * 109.46866 * 299.29953 * 10 9 7 36 36 H 1.08998 * 110.96776 * 24.24256 * 11 9 7 37 37 H 1.09007 * 110.96791 * 147.99895 * 11 9 7 38 38 H 1.08999 * 110.22425 * 215.56893 * 12 11 9 39 39 H 1.09002 * 110.32868 * 93.62328 * 12 11 9 40 40 H 0.96997 * 124.34902 * 197.01132 * 13 12 11 41 41 H 0.97002 * 119.99429 * 265.00252 * 16 3 2 42 42 H 0.96994 * 120.00390 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0860 8 8 6.1634 2.1483 0.2575 9 6 5.8982 4.4748 -0.0367 10 6 5.4942 5.0744 -1.3851 11 6 7.4348 4.5094 0.1325 12 6 7.5749 4.8100 1.6448 13 7 6.3380 5.5035 2.0230 14 6 5.3776 5.3276 1.0992 15 8 4.2568 5.7864 1.1663 16 7 1.6524 2.0975 -1.2518 17 6 0.4156 2.6735 -1.3688 18 1 -0.2740 2.6452 -0.5382 19 6 0.0482 3.2936 -2.5551 20 7 -1.1404 3.8476 -2.6675 21 14 1.2408 3.3419 -3.9921 22 1 1.0370 2.1435 -4.8450 23 1 0.9993 4.5677 -4.7949 24 1 2.6342 3.3529 -3.4788 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8498 1.0377 1.0962 31 1 3.9954 0.8311 -0.6658 32 1 3.4410 3.5484 -0.1308 33 1 4.4078 5.0717 -1.4731 34 1 5.8617 6.0984 -1.4520 35 1 5.9255 4.4803 -2.1908 36 1 7.8766 3.5450 -0.1182 37 1 7.8754 5.3062 -0.4669 38 1 8.4372 5.4525 1.8229 39 1 7.6742 3.8818 2.2077 40 1 6.2278 6.0219 2.8354 41 1 2.2720 2.1231 -1.9977 42 1 -1.3970 4.2813 -3.4963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495057998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:14 Heat of formation + Delta-G solvation = -93.159603 kcal Electronic energy + Delta-G solvation = -23602.629788 eV Core-core repulsion = 20195.496964 eV Total energy + Delta-G solvation = -3407.132824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27440 -40.08514 -38.48867 -37.39378 -35.36540 -34.41822 -33.92157 -32.09745 -30.07881 -29.30610 -26.62516 -25.48235 -24.31266 -22.97155 -22.52522 -21.76447 -20.50536 -19.54976 -18.58659 -18.32893 -17.18516 -17.06783 -16.47608 -16.30047 -15.88191 -15.58000 -15.08045 -14.97868 -14.78797 -14.64879 -14.57347 -14.42035 -14.09817 -13.58648 -13.44029 -13.27111 -13.11355 -12.91645 -12.87799 -12.37790 -12.29099 -12.18090 -12.11100 -11.91273 -11.61754 -11.43331 -11.17781 -10.96909 -10.80784 -10.15754 -10.12165 -9.30427 -7.95777 -5.28333 1.15807 1.38233 1.40648 1.47618 1.51408 2.15003 2.36872 2.51717 3.15854 3.33979 3.36192 3.53627 3.61950 3.82391 3.90411 4.05943 4.29025 4.39055 4.41530 4.52885 4.59592 4.62037 4.69158 4.74475 4.79315 5.00104 5.03797 5.05614 5.10415 5.11554 5.17012 5.39136 5.50058 5.70720 5.71522 5.85459 5.90039 6.26283 6.40917 7.02243 7.11810 7.12458 7.86046 8.05376 9.25498 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.005704 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.318674 B = 4907.485509 C = 5617.856574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.166 3.834 4 H 0.049 0.951 5 C 0.119 3.881 6 N -0.715 5.715 7 C 0.529 3.471 8 O -0.557 6.557 9 C -0.121 4.121 10 C -0.132 4.132 11 C -0.110 4.110 12 C 0.099 3.901 13 N -0.715 5.715 14 C 0.521 3.479 15 O -0.560 6.560 16 N -0.744 5.744 17 C -0.207 4.207 18 H 0.064 0.936 19 C -0.063 4.063 20 N -0.984 5.984 21 Si 0.944 3.056 22 H -0.285 1.285 23 H -0.302 1.302 24 H -0.251 1.251 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.421 0.579 41 H 0.364 0.636 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.021 -0.249 7.792 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.058 3.942 4 H 0.067 0.933 5 C -0.006 4.006 6 N -0.365 5.365 7 C 0.314 3.686 8 O -0.437 6.437 9 C -0.128 4.128 10 C -0.190 4.190 11 C -0.148 4.148 12 C -0.024 4.024 13 N -0.371 5.371 14 C 0.305 3.695 15 O -0.438 6.438 16 N -0.388 5.388 17 C -0.338 4.338 18 H 0.082 0.918 19 C -0.254 4.254 20 N -0.635 5.635 21 Si 0.772 3.228 22 H -0.212 1.212 23 H -0.229 1.229 24 H -0.175 1.175 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.244 0.756 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.262 0.738 41 H 0.197 0.803 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.805 -0.676 7.947 23.218 hybrid contribution -0.653 0.789 -0.812 1.307 sum 21.152 0.113 7.134 22.323 Atomic orbital electron populations 1.21693 0.96465 1.00493 1.01456 1.21942 0.96061 0.96546 1.01978 1.20701 0.91356 0.93586 0.88581 0.93315 1.21703 0.93820 0.82509 1.02520 1.46169 1.07585 1.11013 1.71721 1.20083 0.82228 0.90212 0.76038 1.90638 1.56065 1.46233 1.50744 1.21695 1.00933 0.92395 0.97737 1.21734 1.01878 1.02473 0.92904 1.22849 0.89140 1.06101 0.96688 1.22416 0.86742 0.98239 0.95019 1.46172 1.14209 1.52946 1.23733 1.20617 0.84417 0.79888 0.84548 1.90810 1.21060 1.52986 1.78904 1.42744 1.15219 1.67713 1.13121 1.18937 0.91162 1.25465 0.98264 0.91824 1.25351 0.98122 1.01307 1.00595 1.69864 1.21807 1.44579 1.27274 0.85572 0.80375 0.76515 0.80304 1.21167 1.22938 1.17511 0.94306 0.93564 0.92478 0.92095 0.90137 0.89770 0.91095 0.75588 0.93461 0.89063 0.89715 0.87562 0.86415 0.85898 0.90605 0.73809 0.80303 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.18 71.98 0.66 -4.51 16 2 C -0.13 -3.96 5.61 30.59 0.17 -3.79 16 3 C 0.17 5.94 2.59 44.99 0.12 6.06 16 4 H 0.05 1.90 8.08 -2.38 -0.02 1.88 16 5 C 0.12 3.68 5.23 86.38 0.45 4.13 16 6 N -0.71 -23.48 5.25 -463.05 -2.43 -25.91 16 7 C 0.53 15.85 6.55 87.66 0.57 16.42 16 8 O -0.56 -17.87 15.46 -3.02 -0.05 -17.92 16 9 C -0.12 -2.91 0.74 -52.93 -0.04 -2.95 16 10 C -0.13 -3.15 8.31 71.98 0.60 -2.55 16 11 C -0.11 -1.66 6.06 31.77 0.19 -1.47 16 12 C 0.10 1.20 7.79 86.95 0.68 1.88 16 13 N -0.72 -12.83 6.24 -459.20 -2.87 -15.70 16 14 C 0.52 14.10 7.13 87.90 0.63 14.73 16 15 O -0.56 -20.50 17.83 -3.04 -0.05 -20.55 16 16 N -0.74 -32.65 4.31 -322.94 -1.39 -34.05 16 17 C -0.21 -11.25 8.23 84.03 0.69 -10.56 16 18 H 0.06 3.81 7.55 -2.91 -0.02 3.79 16 19 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 20 N -0.98 -62.77 13.97 21.65 0.30 -62.47 16 21 Si 0.94 45.25 27.74 68.60 1.90 47.15 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 24 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 2.05 5.99 -2.38 -0.01 2.04 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.41 15.11 7.54 -92.71 -0.70 14.41 16 33 H 0.05 1.42 7.59 -2.39 -0.02 1.40 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.74 6.94 -2.39 -0.02 1.72 16 37 H 0.12 1.13 7.92 -2.38 -0.02 1.11 16 38 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.42 6.03 8.96 -92.71 -0.83 5.20 16 41 H 0.36 15.72 5.66 -92.71 -0.52 15.19 16 42 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -73.75 340.43 -0.46 -74.21 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -1.07 Total: 41.00 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 5.19 Total: 14.23 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -6.38 Total: -138.12 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.10 Total: -38.47 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Total: -73.75 -0.46 -74.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495057998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.949 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds