Wall clock time and date at job start Tue Mar 31 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46963 * 2 1 4 4 C 1.53000 * 109.46700 * 240.00250 * 2 1 3 5 5 N 1.46502 * 109.46670 * 184.99938 * 4 2 1 6 6 C 1.46498 * 120.00223 * 269.99711 * 5 4 2 7 7 C 1.36937 * 119.99878 * 90.00446 * 5 4 2 8 8 H 1.08005 * 120.00252 * 20.91146 * 7 5 4 9 9 C 1.38810 * 120.00302 * 200.91503 * 7 5 4 10 10 N 1.31618 * 119.99604 * 15.41704 * 9 7 5 11 11 Si 1.86793 * 120.00368 * 195.41639 * 9 7 5 12 12 H 1.48508 * 109.46978 * 90.00048 * 11 9 7 13 13 H 1.48497 * 109.47149 * 209.99741 * 11 9 7 14 14 H 1.48500 * 109.47265 * 330.00277 * 11 9 7 15 15 N 1.46497 * 109.46762 * 120.00678 * 2 1 3 16 16 C 1.34780 * 119.99925 * 274.99480 * 15 2 1 17 17 O 1.21286 * 119.99753 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00163 * 180.02562 * 16 15 2 19 19 H 1.09005 * 109.72941 * 300.40379 * 18 16 15 20 20 C 1.53346 * 109.60617 * 180.02562 * 18 16 15 21 21 C 1.53068 * 108.45641 * 172.72919 * 20 18 16 22 22 C 1.50172 * 109.89051 * 48.87946 * 21 20 18 23 23 O 1.21288 * 118.24276 * 162.39587 * 22 21 20 24 24 N 1.33346 * 123.51242 * 342.41262 * 22 21 20 25 25 C 1.45758 * 124.10363 * 2.25166 * 24 22 21 26 26 H 1.09001 * 109.46936 * 299.99564 * 1 2 3 27 27 H 1.08999 * 109.46921 * 59.99364 * 1 2 3 28 28 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47317 * 304.99907 * 4 2 1 30 30 H 1.09004 * 109.47157 * 65.00353 * 4 2 1 31 31 H 1.09003 * 109.46599 * 93.87042 * 6 5 4 32 32 H 1.08995 * 109.47599 * 213.87016 * 6 5 4 33 33 H 1.09002 * 109.47151 * 333.87891 * 6 5 4 34 34 H 0.97001 * 120.00163 * 179.97438 * 10 9 7 35 35 H 0.97003 * 120.00270 * 95.00025 * 15 2 1 36 36 H 1.08994 * 109.67737 * 52.96876 * 20 18 16 37 37 H 1.09007 * 109.66862 * 292.47812 * 20 18 16 38 38 H 1.09001 * 109.39828 * 169.01076 * 21 20 18 39 39 H 1.09002 * 109.39622 * 288.83232 * 21 20 18 40 40 H 0.97002 * 117.95269 * 182.22283 * 24 22 21 41 41 H 1.09001 * 109.29788 * 101.21475 * 25 24 22 42 42 H 1.08998 * 109.29752 * 220.78730 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0850 -1.9159 -0.6025 8 1 3.5260 -2.8330 -0.4881 9 6 5.3962 -1.8418 -0.1531 10 7 5.9771 -0.6695 -0.0087 11 14 6.3364 -3.4055 0.2467 12 1 7.0422 -3.8833 -0.9695 13 1 7.3275 -3.1273 1.3169 14 1 5.3871 -4.4491 0.7102 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0185 2.3571 17 8 1.8583 1.1582 2.4118 18 6 2.6499 -0.7288 3.5874 19 1 1.9843 -1.5567 3.8321 20 6 2.7020 0.2536 4.7636 21 6 3.0386 -0.5298 6.0348 22 6 4.2228 -1.4197 5.7880 23 8 4.8210 -1.8583 6.7477 24 7 4.6520 -1.7533 4.5704 25 6 4.0600 -1.2623 3.3323 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1370 31 1 4.5970 0.9489 -0.9815 32 1 5.2433 -0.2020 -2.1756 33 1 3.7834 0.7444 -2.5513 34 1 6.8933 -0.6176 0.3056 35 1 2.2490 -1.6319 1.1525 36 1 1.7337 0.7407 4.8782 37 1 3.4710 1.0044 4.5808 38 1 3.2714 0.1680 6.8392 39 1 2.1821 -1.1400 6.3214 40 1 5.4057 -2.3603 4.5045 41 1 4.6803 -0.4618 2.9290 42 1 4.0087 -2.0769 2.6098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498325432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:03 Heat of formation + Delta-G solvation = -83.577032 kcal Electronic energy + Delta-G solvation = -24060.520845 eV Core-core repulsion = 20653.803552 eV Total energy + Delta-G solvation = -3406.717293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62855 -40.41957 -38.12307 -37.20059 -35.65490 -33.98366 -33.21924 -31.97584 -30.33807 -27.98582 -27.30508 -25.74040 -24.59898 -23.39592 -22.01119 -21.18354 -20.09485 -18.84277 -18.48372 -17.64430 -17.28484 -16.82250 -16.64613 -16.29580 -15.94908 -15.54221 -15.13252 -15.03292 -14.94252 -14.60386 -14.40438 -14.12980 -13.82697 -13.31696 -13.07427 -12.94171 -12.81780 -12.80136 -12.66062 -12.48649 -12.23680 -12.09852 -11.98902 -11.89026 -11.88038 -11.61097 -10.86751 -10.68616 -10.53029 -10.19103 -9.75545 -8.71915 -7.71690 -5.16371 1.46630 1.54654 1.55687 1.58734 1.73100 2.27679 2.47340 2.56082 3.43162 3.56076 3.60261 3.70399 3.74168 3.81875 4.19353 4.26904 4.32141 4.42415 4.52040 4.59645 4.62501 4.80393 4.82091 4.85642 4.90594 4.98088 5.03286 5.07690 5.19871 5.25919 5.37995 5.47159 5.66470 5.72281 5.78054 5.84114 6.27788 6.39260 6.82643 7.10721 7.22585 7.47518 7.95728 8.42663 9.31060 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.007964 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.830001 B = 3514.871239 C = 5142.368370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 H 0.040 0.960 4 C 0.141 3.859 5 N -0.609 5.609 6 C 0.178 3.822 7 C -0.243 4.243 8 H 0.081 0.919 9 C -0.032 4.032 10 N -0.924 5.924 11 Si 0.933 3.067 12 H -0.303 1.303 13 H -0.303 1.303 14 H -0.257 1.257 15 N -0.684 5.684 16 C 0.522 3.478 17 O -0.589 6.589 18 C -0.114 4.114 19 H 0.133 0.867 20 C -0.096 4.096 21 C -0.122 4.122 22 C 0.515 3.485 23 O -0.607 6.607 24 N -0.709 5.709 25 C 0.133 3.867 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H -0.006 1.006 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.241 0.759 35 H 0.407 0.593 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.400 0.600 41 H 0.049 0.951 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 -2.020 3.730 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.059 0.941 4 C 0.014 3.986 5 N -0.331 5.331 6 C 0.032 3.968 7 C -0.374 4.374 8 H 0.098 0.902 9 C -0.228 4.228 10 N -0.571 5.571 11 Si 0.764 3.236 12 H -0.232 1.232 13 H -0.231 1.231 14 H -0.182 1.182 15 N -0.333 5.333 16 C 0.308 3.692 17 O -0.470 6.470 18 C -0.136 4.136 19 H 0.150 0.850 20 C -0.134 4.134 21 C -0.161 4.161 22 C 0.304 3.696 23 O -0.490 6.490 24 N -0.358 5.358 25 C 0.009 3.991 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.012 0.988 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.243 0.757 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.235 0.765 41 H 0.067 0.933 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.072 -1.240 4.242 11.921 hybrid contribution 1.860 -1.052 -0.140 2.141 sum -9.212 -2.292 4.103 10.341 Atomic orbital electron populations 1.22024 0.93859 1.02664 1.01993 1.21688 0.94020 0.96207 0.86736 0.94144 1.21373 0.83246 0.99406 0.94542 1.44100 1.00774 1.22029 1.66241 1.20481 0.92764 0.90094 0.93435 1.19388 0.96126 0.90410 1.31430 0.90160 1.25353 0.99455 0.97209 1.00768 1.70247 1.12680 1.23063 1.51124 0.85800 0.79406 0.81790 0.76654 1.23161 1.23054 1.18152 1.45797 1.64479 1.14418 1.08575 1.20429 0.77005 0.86648 0.85156 1.90625 1.53209 1.17343 1.85861 1.21595 0.97091 1.00716 0.94157 0.84962 1.21408 1.03993 0.96593 0.91368 1.21679 0.96129 0.98724 0.99553 1.20839 0.86208 0.80778 0.81795 1.90719 1.59251 1.57480 1.41535 1.45507 1.35656 1.48926 1.05759 1.21132 0.92856 1.00022 0.85121 0.93971 0.90484 0.91005 0.91312 0.91227 0.98762 0.96404 0.95688 0.94945 0.75668 0.88539 0.92675 0.86664 0.85246 0.76517 0.93302 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.48 71.99 0.68 -2.92 16 2 C 0.12 3.90 2.88 45.00 0.13 4.03 16 3 H 0.04 1.61 7.58 -2.39 -0.02 1.59 16 4 C 0.14 4.58 5.36 86.38 0.46 5.05 16 5 N -0.61 -25.79 2.82 -726.93 -2.05 -27.83 16 6 C 0.18 8.12 9.02 127.77 1.15 9.27 16 7 C -0.24 -10.86 8.01 84.03 0.67 -10.18 16 8 H 0.08 3.34 7.86 -2.91 -0.02 3.32 16 9 C -0.03 -1.52 5.04 84.86 0.43 -1.09 16 10 N -0.92 -49.00 10.73 21.65 0.23 -48.77 16 11 Si 0.93 39.65 29.58 68.60 2.03 41.68 16 12 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 13 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 15 N -0.68 -22.06 4.40 -442.52 -1.95 -24.01 16 16 C 0.52 17.53 7.10 87.65 0.62 18.15 16 17 O -0.59 -23.82 15.56 -3.05 -0.05 -23.86 16 18 C -0.11 -3.03 2.60 -11.45 -0.03 -3.06 16 19 H 0.13 2.66 8.12 -2.38 -0.02 2.64 16 20 C -0.10 -2.36 4.71 30.73 0.14 -2.21 16 21 C -0.12 -2.62 6.03 29.71 0.18 -2.44 16 22 C 0.51 15.18 7.71 87.71 0.68 15.85 16 23 O -0.61 -22.38 17.78 -3.05 -0.05 -22.43 16 24 N -0.71 -20.77 5.45 -467.33 -2.55 -23.32 16 25 C 0.13 4.09 6.33 86.49 0.55 4.64 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.07 2.00 8.03 -2.39 -0.02 1.98 16 30 H 0.07 2.04 7.87 -2.38 -0.02 2.02 16 31 H -0.01 -0.31 7.46 -2.39 -0.02 -0.33 16 32 H 0.02 0.87 7.18 -2.39 -0.02 0.86 16 33 H 0.02 0.97 7.85 -2.39 -0.02 0.96 16 34 H 0.24 12.95 8.31 -92.71 -0.77 12.18 16 35 H 0.41 12.48 7.07 -92.71 -0.66 11.82 16 36 H 0.10 2.21 7.90 -2.39 -0.02 2.19 16 37 H 0.05 1.61 8.13 -2.38 -0.02 1.59 16 38 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.40 11.74 8.80 -92.71 -0.82 10.93 16 41 H 0.05 1.88 8.11 -2.39 -0.02 1.86 16 42 H 0.09 2.78 7.88 -2.39 -0.02 2.76 16 Total: -1.00 -64.30 340.80 0.84 -63.46 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.45 Total: 29.99 kcal Atomic # 6 Polarization: 29.42 SS G_CDS: 5.67 Total: 35.09 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -6.31 Total: -123.93 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.10 Total: -46.29 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -64.30 0.84 -63.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498325432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.118 kcal (2) G-P(sol) polarization free energy of solvation -64.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds