Wall clock time and date at job start Tue Mar 31 2020 02:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47158 * 2 1 4 4 C 1.53002 * 109.47277 * 119.99657 * 2 1 3 5 5 N 1.46498 * 109.47421 * 174.99842 * 4 2 1 6 6 C 1.46499 * 120.00002 * 270.00259 * 5 4 2 7 7 C 1.36940 * 120.00139 * 89.99769 * 5 4 2 8 8 H 1.07998 * 119.99479 * 23.62295 * 7 5 4 9 9 C 1.38807 * 120.00292 * 203.61816 * 7 5 4 10 10 N 1.31617 * 119.99896 * 11.31105 * 9 7 5 11 11 Si 1.86796 * 120.00073 * 191.30933 * 9 7 5 12 12 H 1.48503 * 109.47236 * 90.00163 * 11 9 7 13 13 H 1.48498 * 109.47280 * 210.00034 * 11 9 7 14 14 H 1.48498 * 109.47068 * 330.00288 * 11 9 7 15 15 N 1.46498 * 109.47311 * 239.99825 * 2 1 3 16 16 C 1.34776 * 120.00249 * 85.27067 * 15 2 1 17 17 O 1.21276 * 119.99670 * 359.73430 * 16 15 2 18 18 C 1.50700 * 120.00152 * 179.72796 * 16 15 2 19 19 H 1.09001 * 109.59788 * 300.00344 * 18 16 15 20 20 C 1.53342 * 109.60361 * 179.67914 * 18 16 15 21 21 C 1.53066 * 108.42688 * 172.71135 * 20 18 16 22 22 C 1.50180 * 109.89167 * 48.89797 * 21 20 18 23 23 O 1.21278 * 118.24553 * 162.39287 * 22 21 20 24 24 N 1.33353 * 123.50689 * 342.42189 * 22 21 20 25 25 C 1.45824 * 124.16957 * 2.04028 * 24 22 21 26 26 H 1.09004 * 109.46804 * 300.00061 * 1 2 3 27 27 H 1.08991 * 109.46996 * 60.00087 * 1 2 3 28 28 H 1.08997 * 109.46871 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47338 * 294.99857 * 4 2 1 30 30 H 1.09002 * 109.46859 * 54.99522 * 4 2 1 31 31 H 1.09001 * 109.47222 * 94.53732 * 6 5 4 32 32 H 1.09005 * 109.47211 * 214.53281 * 6 5 4 33 33 H 1.08999 * 109.47267 * 334.53456 * 6 5 4 34 34 H 0.97001 * 120.00232 * 179.97438 * 10 9 7 35 35 H 0.97001 * 119.99613 * 265.00617 * 15 2 1 36 36 H 1.08996 * 109.67382 * 292.44834 * 20 18 16 37 37 H 1.08998 * 109.67137 * 52.94372 * 20 18 16 38 38 H 1.08997 * 109.40128 * 169.02983 * 21 20 18 39 39 H 1.09002 * 109.40104 * 288.86131 * 21 20 18 40 40 H 0.96997 * 117.95027 * 182.21988 * 24 22 21 41 41 H 1.09002 * 109.45727 * 220.86502 * 25 24 22 42 42 H 1.08995 * 109.18036 * 101.45778 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1258 -1.9920 0.5613 7 6 4.2799 0.1649 1.7240 8 1 3.8835 0.8071 2.4965 9 6 5.5800 0.3442 1.2718 10 7 5.9919 -0.2796 0.1885 11 14 6.7449 1.4709 2.2007 12 1 7.4752 0.6881 3.2299 13 1 7.7176 2.0688 1.2512 14 1 5.9681 2.5514 2.8596 15 7 2.0184 -0.6906 -1.1961 16 6 2.1523 -0.0170 -2.3558 17 8 1.8639 1.1597 -2.4102 18 6 2.6605 -0.7260 -3.5846 19 1 3.6590 -1.1191 -3.3933 20 6 2.7109 0.2560 -4.7613 21 6 3.3983 -0.4367 -5.9405 22 6 2.7916 -1.7927 -6.1609 23 8 2.9787 -2.3387 -7.2275 24 7 2.0578 -2.4282 -5.2466 25 6 1.7164 -1.8749 -3.9414 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -0.1582 2.1370 30 1 1.6053 -1.7197 1.2953 31 1 4.3533 -1.7642 -0.4801 32 1 5.0472 -2.2388 1.0888 33 1 3.4426 -2.8400 0.6069 34 1 6.9002 -0.1540 -0.1278 35 1 2.2490 -1.6318 -1.1525 36 1 1.6979 0.5426 -5.0437 37 1 3.2767 1.1426 -4.4752 38 1 3.2715 0.1671 -6.8391 39 1 4.4612 -0.5476 -5.7257 40 1 1.7322 -3.3161 -5.4621 41 1 1.7961 -2.6550 -3.1842 42 1 0.6916 -1.5045 -3.9663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498325436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:07 Heat of formation + Delta-G solvation = -62.140252 kcal Electronic energy + Delta-G solvation = -23548.719129 eV Core-core repulsion = 20142.931405 eV Total energy + Delta-G solvation = -3405.787724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56202 -39.20140 -36.71895 -35.96100 -34.11283 -33.00388 -31.56850 -30.59139 -29.30267 -26.24760 -25.66141 -24.80534 -23.49241 -21.84244 -20.62803 -20.00644 -19.03240 -17.65444 -16.86920 -16.53930 -16.10951 -15.56130 -15.34269 -14.91038 -14.65828 -14.20384 -13.91468 -13.70361 -13.53285 -13.30533 -13.25056 -12.85599 -12.23693 -12.12254 -11.84221 -11.70370 -11.48825 -11.30916 -11.10936 -11.02419 -10.87862 -10.82626 -10.59572 -10.27456 -10.01021 -9.91044 -9.80810 -9.37373 -9.23104 -8.65867 -8.43563 -6.80943 -5.78743 -3.24886 2.57210 2.99700 3.19917 3.35646 3.42750 3.43475 3.63415 4.46171 4.50082 4.56793 4.66799 4.77215 5.18372 5.24998 5.26483 5.36564 5.39867 5.43269 5.61293 5.65620 5.74331 5.81927 5.93981 6.04280 6.04451 6.16298 6.19147 6.41612 6.47633 6.56762 6.63335 6.82542 7.10118 7.17813 7.24660 7.57810 7.75642 8.02513 8.10948 8.33714 8.71424 9.17567 9.79592 10.27457 11.26513 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.005098 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.828903 B = 5491.091176 C = 6237.007681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.086 0.914 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.905 5.905 11 Si 0.904 3.096 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.696 5.696 16 C 0.528 3.472 17 O -0.545 6.545 18 C -0.127 4.127 19 H 0.111 0.889 20 C -0.101 4.101 21 C -0.136 4.136 22 C 0.522 3.478 23 O -0.564 6.564 24 N -0.717 5.717 25 C 0.122 3.878 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.043 0.957 33 H -0.006 1.006 34 H 0.251 0.749 35 H 0.394 0.606 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.400 0.600 41 H 0.083 0.917 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 -4.404 -5.951 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.550 5.550 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.345 5.345 16 C 0.313 3.687 17 O -0.423 6.423 18 C -0.148 4.148 19 H 0.129 0.871 20 C -0.139 4.139 21 C -0.176 4.176 22 C 0.310 3.690 23 O -0.443 6.443 24 N -0.369 5.369 25 C -0.003 4.003 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.013 0.987 34 H 0.062 0.938 35 H 0.228 0.772 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.235 0.765 41 H 0.101 0.899 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.454 -3.612 -6.520 12.039 hybrid contribution 0.823 -0.149 0.529 0.990 sum -8.631 -3.761 -5.991 11.159 Atomic orbital electron populations 1.22147 0.96849 1.01048 1.01719 1.21881 0.91637 0.99228 0.86394 0.89604 1.21198 0.85787 0.97194 0.94396 1.43881 0.99055 1.20848 1.68162 1.20845 0.94601 0.85037 0.97822 1.19178 0.94595 1.10556 1.14277 0.91442 1.25002 0.98859 0.99028 0.96327 1.70016 1.17215 1.45732 1.22057 0.86265 0.80935 0.80444 0.78930 1.21559 1.21779 1.20503 1.45822 1.65735 1.13562 1.09381 1.19920 0.77534 0.87106 0.84174 1.90663 1.50648 1.15796 1.85166 1.21647 1.01710 0.96515 0.94964 0.87125 1.21453 1.02268 0.98251 0.91950 1.21704 1.01934 0.92938 1.01028 1.20285 0.77555 0.88127 0.83062 1.90744 1.60571 1.67700 1.25278 1.45425 1.54091 1.20928 1.16479 1.21316 0.98440 0.96079 0.84461 0.92103 0.92985 0.93210 0.92315 0.94050 0.95101 0.93869 0.98733 0.93849 0.77159 0.90732 0.89192 0.87858 0.87801 0.76501 0.89882 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.49 37.16 0.35 -1.81 16 2 C 0.12 1.99 2.88 -67.93 -0.20 1.80 16 3 H 0.09 1.83 7.57 -51.93 -0.39 1.44 16 4 C 0.14 2.57 5.33 -4.04 -0.02 2.55 16 5 N -0.60 -13.58 2.78 -181.12 -0.50 -14.08 16 6 C 0.16 3.52 7.61 59.85 0.46 3.98 16 7 C -0.26 -6.69 9.66 -15.06 -0.15 -6.84 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.91 -24.98 10.66 55.49 0.59 -24.39 16 11 Si 0.90 21.51 29.57 -169.99 -5.03 16.48 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 N -0.70 -11.12 4.32 -53.81 -0.23 -11.35 16 16 C 0.53 8.75 7.10 -10.99 -0.08 8.67 16 17 O -0.55 -11.00 15.55 5.56 0.09 -10.91 16 18 C -0.13 -1.63 2.59 -91.64 -0.24 -1.86 16 19 H 0.11 1.50 8.12 -51.93 -0.42 1.08 16 20 C -0.10 -1.25 4.72 -26.52 -0.13 -1.37 16 21 C -0.14 -1.54 6.03 -28.10 -0.17 -1.71 16 22 C 0.52 6.78 7.71 -11.87 -0.09 6.69 16 23 O -0.56 -9.37 17.78 5.56 0.10 -9.27 16 24 N -0.72 -7.50 5.45 -61.34 -0.33 -7.83 16 25 C 0.12 1.19 6.34 -4.45 -0.03 1.17 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.05 8.03 -51.93 -0.42 0.63 16 30 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 31 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 32 H 0.04 1.06 7.30 -51.93 -0.38 0.68 16 33 H -0.01 -0.11 7.84 -51.93 -0.41 -0.51 16 34 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.39 5.68 6.81 -40.82 -0.28 5.40 16 36 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.40 3.60 8.80 -40.82 -0.36 3.24 16 41 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 42 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -32.47 340.12 -7.31 -39.78 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.74 Total: 5.12 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -0.37 Total: 11.34 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.48 Total: -57.66 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.19 Total: -20.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.47 -7.31 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498325436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.360 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds