Wall clock time and date at job start Tue Mar 31 2020 02:58:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09000 * 109.47369 * 2 1
4 4 C 1.52997 * 109.47318 * 120.00544 * 2 1 3
5 5 N 1.46499 * 109.47155 * 174.99923 * 4 2 1
6 6 C 1.46500 * 120.00129 * 89.99737 * 5 4 2
7 7 C 1.36939 * 119.99739 * 270.26783 * 5 4 2
8 8 H 1.08001 * 119.99591 * 21.26198 * 7 5 4
9 9 C 1.38813 * 119.99841 * 201.25416 * 7 5 4
10 10 N 1.31623 * 119.99935 * 14.29439 * 9 7 5
11 11 Si 1.86800 * 119.99841 * 194.28721 * 9 7 5
12 12 H 1.48498 * 109.46863 * 60.00407 * 11 9 7
13 13 H 1.48500 * 109.47072 * 180.02562 * 11 9 7
14 14 H 1.48501 * 109.47399 * 300.00435 * 11 9 7
15 15 N 1.46504 * 109.46673 * 240.00024 * 2 1 3
16 16 C 1.34781 * 120.00094 * 85.00279 * 15 2 1
17 17 O 1.21282 * 119.99826 * 359.97438 * 16 15 2
18 18 C 1.50693 * 120.00148 * 179.97438 * 16 15 2
19 19 H 1.08999 * 109.40289 * 60.17339 * 18 16 15
20 20 C 1.53069 * 109.40120 * 180.02562 * 18 16 15
21 21 C 1.53347 * 108.42562 * 169.03264 * 20 18 16
22 22 C 1.52919 * 108.67049 * 292.46348 * 21 20 18
23 23 N 1.45760 * 110.48848 * 50.75746 * 22 21 20
24 24 C 1.33355 * 124.10363 * 340.92028 * 23 22 21
25 25 O 1.21284 * 118.24559 * 182.22100 * 24 23 22
26 26 H 1.09000 * 109.46938 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.46835 * 299.99924 * 1 2 3
28 28 H 1.08994 * 109.46833 * 59.99706 * 1 2 3
29 29 H 1.08994 * 109.47380 * 54.99205 * 4 2 1
30 30 H 1.09010 * 109.46568 * 294.99755 * 4 2 1
31 31 H 1.09003 * 109.47323 * 95.14144 * 6 5 4
32 32 H 1.08994 * 109.47083 * 215.14139 * 6 5 4
33 33 H 1.09000 * 109.47106 * 335.14270 * 6 5 4
34 34 H 0.97001 * 119.99592 * 180.02562 * 10 9 7
35 35 H 0.97001 * 120.00058 * 264.99684 * 15 2 1
36 36 H 1.09003 * 109.66878 * 288.76086 * 20 18 16
37 37 H 1.08992 * 109.67725 * 49.25568 * 20 18 16
38 38 H 1.08992 * 109.60491 * 52.22439 * 21 20 18
39 39 H 1.08999 * 109.60554 * 172.54823 * 21 20 18
40 40 H 1.09006 * 109.29943 * 171.06706 * 22 21 20
41 41 H 1.08998 * 109.30824 * 290.65010 * 22 21 20
42 42 H 0.97001 * 117.94767 * 160.91873 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2491
5 7 3.5001 -0.8265 1.1904
6 6 4.3345 0.2339 1.7611
7 6 4.0850 -1.9133 0.5971
8 1 3.5271 -2.5066 -0.1123
9 6 5.3948 -2.2523 0.9074
10 7 5.9808 -1.7203 1.9591
11 14 6.3258 -3.4635 -0.1676
12 1 6.4108 -2.9329 -1.5519
13 1 7.6949 -3.6556 0.3744
14 1 5.6115 -4.7654 -0.1796
15 7 2.0183 -0.6906 -1.1962
16 6 2.1470 -0.0183 -2.3572
17 8 1.8582 1.1584 -2.4118
18 6 2.6498 -0.7285 -3.5876
19 1 1.9751 -1.5485 -3.8334
20 6 2.7011 0.2566 -4.7580
21 6 3.4657 -0.4021 -5.9127
22 6 4.9294 -0.5647 -5.5009
23 7 5.0240 -1.2128 -4.1987
24 6 4.0221 -1.2773 -3.3210
25 8 4.2302 -1.8076 -2.2503
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8899
29 1 1.6054 -1.7198 1.2951
30 1 1.7517 -0.1584 2.1369
31 1 4.6184 -0.0350 2.7786
32 1 5.2314 0.3569 1.1541
33 1 3.7744 1.1689 1.7753
34 1 6.8963 -1.9569 2.1756
35 1 2.2490 -1.6318 -1.1527
36 1 1.6878 0.4978 -5.0792
37 1 3.2147 1.1670 -4.4492
38 1 3.0348 -1.3803 -6.1257
39 1 3.4008 0.2272 -6.8003
40 1 5.4473 -1.1715 -6.2437
41 1 5.3996 0.4170 -5.4463
42 1 5.8687 -1.6228 -3.9553
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001669826743.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:54
Heat of formation + Delta-G solvation = -48.074759 kcal
Electronic energy + Delta-G solvation = -24408.875676 eV
Core-core repulsion = 21003.697878 eV
Total energy + Delta-G solvation = -3405.177799 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.53982 -38.58401 -36.51917 -35.99883 -33.85191 -32.92504 -31.15396 -30.18329
-29.33470 -26.06971 -25.40863 -24.94793 -22.61014 -21.87760 -20.65686 -19.71688
-18.93241 -17.31147 -16.85447 -16.32420 -16.10179 -15.40298 -14.88453 -14.79796
-14.30719 -13.93218 -13.70964 -13.59913 -13.45721 -13.16154 -12.79965 -12.66323
-12.13980 -11.88887 -11.78474 -11.51594 -11.36770 -11.28987 -11.04462 -10.89572
-10.67632 -10.56962 -10.27538 -10.18146 -9.82190 -9.58961 -9.41655 -9.17476
-8.83840 -8.32309 -8.23083 -6.55197 -5.47742 -2.90622 2.78263 3.15777
3.55482 3.57911 3.62818 3.73339 3.82651 4.57910 4.65030 4.73552
4.76882 4.81276 5.24391 5.28662 5.31966 5.48460 5.53480 5.64553
5.67858 5.74004 5.74880 5.89456 5.92714 6.04630 6.19711 6.24279
6.29176 6.52139 6.56106 6.86603 6.94125 6.99428 7.25238 7.50934
7.54105 7.86768 8.04451 8.26842 8.56339 8.61057 8.85676 9.46346
10.10028 10.56143 11.58063
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.013684 B = 0.008782 C = 0.005861
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2045.668973 B = 3187.613097 C = 4776.353497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.114 3.886
3 H 0.074 0.926
4 C 0.142 3.858
5 N -0.597 5.597
6 C 0.166 3.834
7 C -0.217 4.217
8 H 0.071 0.929
9 C -0.002 4.002
10 N -0.920 5.920
11 Si 0.910 3.090
12 H -0.274 1.274
13 H -0.306 1.306
14 H -0.293 1.293
15 N -0.677 5.677
16 C 0.527 3.473
17 O -0.559 6.559
18 C -0.125 4.125
19 H 0.120 0.880
20 C -0.102 4.102
21 C -0.136 4.136
22 C 0.111 3.889
23 N -0.725 5.725
24 C 0.507 3.493
25 O -0.485 6.485
26 H 0.052 0.948
27 H 0.060 0.940
28 H 0.051 0.949
29 H 0.051 0.949
30 H 0.050 0.950
31 H 0.029 0.971
32 H 0.039 0.961
33 H -0.007 1.007
34 H 0.246 0.754
35 H 0.411 0.589
36 H 0.078 0.922
37 H 0.081 0.919
38 H 0.071 0.929
39 H 0.084 0.916
40 H 0.073 0.927
41 H 0.062 0.938
42 H 0.402 0.598
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.958 1.930 -14.988 16.636
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.006 3.994
3 H 0.092 0.908
4 C 0.014 3.986
5 N -0.319 5.319
6 C 0.021 3.979
7 C -0.347 4.347
8 H 0.089 0.911
9 C -0.198 4.198
10 N -0.567 5.567
11 Si 0.742 3.258
12 H -0.200 1.200
13 H -0.233 1.233
14 H -0.220 1.220
15 N -0.327 5.327
16 C 0.311 3.689
17 O -0.439 6.439
18 C -0.149 4.149
19 H 0.138 0.862
20 C -0.140 4.140
21 C -0.174 4.174
22 C -0.014 4.014
23 N -0.380 5.380
24 C 0.291 3.709
25 O -0.357 6.357
26 H 0.071 0.929
27 H 0.079 0.921
28 H 0.070 0.930
29 H 0.069 0.931
30 H 0.068 0.932
31 H 0.047 0.953
32 H 0.058 0.942
33 H 0.011 0.989
34 H 0.056 0.944
35 H 0.250 0.750
36 H 0.096 0.904
37 H 0.099 0.901
38 H 0.090 0.910
39 H 0.103 0.897
40 H 0.091 0.909
41 H 0.080 0.920
42 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges -7.085 2.523 -14.370 16.219
hybrid contribution 1.169 -1.170 -0.664 1.783
sum -5.915 1.353 -15.034 16.212
Atomic orbital electron populations
1.22120 0.96630 1.01360 1.01529 1.21927 0.92067 0.98286 0.87072
0.90750 1.21029 0.86396 0.98110 0.93102 1.43880 0.98685 1.21427
1.67900 1.20747 0.92837 0.86110 0.98178 1.19017 0.96167 1.04070
1.15405 0.91120 1.24848 0.98670 0.99443 0.96836 1.70105 1.13000
1.47659 1.25926 0.86246 0.77854 0.80434 0.81246 1.19984 1.23319
1.22025 1.46000 1.63477 1.15076 1.08185 1.19685 0.78069 0.86819
0.84322 1.90634 1.52391 1.15698 1.85221 1.21442 0.96179 1.00711
0.96597 0.86232 1.21461 1.01969 0.98063 0.92508 1.21894 0.94640
1.01966 0.98856 1.21334 0.97461 0.97902 0.84685 1.45379 1.15477
1.59528 1.17646 1.19717 0.85999 0.80760 0.84468 1.91080 1.81701
1.41638 1.21247 0.92907 0.92138 0.93018 0.93106 0.93190 0.95270
0.94191 0.98886 0.94360 0.75011 0.90357 0.90081 0.91036 0.89706
0.90901 0.91959 0.76246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16
2 C 0.11 2.16 2.88 -67.93 -0.20 1.97 16
3 H 0.07 1.58 7.58 -51.93 -0.39 1.19 16
4 C 0.14 2.94 5.30 -4.04 -0.02 2.92 16
5 N -0.60 -15.28 2.82 -181.12 -0.51 -15.79 16
6 C 0.17 4.35 8.98 59.85 0.54 4.89 16
7 C -0.22 -5.98 7.50 -15.06 -0.11 -6.10 16
8 H 0.07 1.91 5.28 -52.49 -0.28 1.63 16
9 C 0.00 -0.05 5.07 -17.43 -0.09 -0.14 16
10 N -0.92 -28.14 10.70 55.49 0.59 -27.54 16
11 Si 0.91 23.56 28.46 -169.99 -4.84 18.72 16
12 H -0.27 -6.87 6.58 56.52 0.37 -6.50 16
13 H -0.31 -8.09 7.11 56.52 0.40 -7.68 16
14 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16
15 N -0.68 -12.95 3.97 -53.80 -0.21 -13.16 16
16 C 0.53 9.74 7.03 -10.99 -0.08 9.66 16
17 O -0.56 -11.61 15.46 5.56 0.09 -11.53 16
18 C -0.12 -1.82 2.78 -93.14 -0.26 -2.08 16
19 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16
20 C -0.10 -1.20 4.78 -26.52 -0.13 -1.33 16
21 C -0.14 -1.15 6.02 -26.59 -0.16 -1.31 16
22 C 0.11 1.03 7.17 -4.48 -0.03 1.00 16
23 N -0.73 -9.90 5.45 -61.38 -0.33 -10.24 16
24 C 0.51 8.52 7.28 -11.87 -0.09 8.44 16
25 O -0.48 -10.40 11.47 5.55 0.06 -10.33 16
26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
29 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16
30 H 0.05 0.97 8.07 -51.92 -0.42 0.55 16
31 H 0.03 0.81 7.39 -51.93 -0.38 0.43 16
32 H 0.04 1.14 7.26 -51.93 -0.38 0.77 16
33 H -0.01 -0.18 8.03 -51.93 -0.42 -0.59 16
34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16
35 H 0.41 8.17 5.22 -40.82 -0.21 7.96 16
36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
37 H 0.08 1.12 7.73 -51.93 -0.40 0.71 16
38 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16
39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
42 H 0.40 5.65 8.80 -40.82 -0.36 5.29 16
LS Contribution 328.36 15.07 4.95 4.95
Total: -1.00 -34.63 328.36 -7.10 -41.73
By element:
Atomic # 1 Polarization: 13.93 SS G_CDS: -6.63 Total: 7.30 kcal
Atomic # 6 Polarization: 16.16 SS G_CDS: -0.27 Total: 15.89 kcal
Atomic # 7 Polarization: -66.27 SS G_CDS: -0.47 Total: -66.73 kcal
Atomic # 8 Polarization: -22.01 SS G_CDS: 0.15 Total: -21.86 kcal
Atomic # 14 Polarization: 23.56 SS G_CDS: -4.84 Total: 18.72 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -34.63 -7.10 -41.73 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001669826743.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.346 kcal
(2) G-P(sol) polarization free energy of solvation -34.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.973 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds