Wall clock time and date at job start Tue Mar 31 2020 02:58:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09000 * 109.47369 * 2 1
4 4 C 1.52997 * 109.47318 * 120.00544 * 2 1 3
5 5 N 1.46499 * 109.47155 * 174.99923 * 4 2 1
6 6 C 1.46500 * 120.00129 * 89.99737 * 5 4 2
7 7 C 1.36939 * 119.99739 * 270.26783 * 5 4 2
8 8 H 1.08001 * 119.99591 * 21.26198 * 7 5 4
9 9 C 1.38813 * 119.99841 * 201.25416 * 7 5 4
10 10 N 1.31623 * 119.99935 * 14.29439 * 9 7 5
11 11 Si 1.86800 * 119.99841 * 194.28721 * 9 7 5
12 12 H 1.48498 * 109.46863 * 60.00407 * 11 9 7
13 13 H 1.48500 * 109.47072 * 180.02562 * 11 9 7
14 14 H 1.48501 * 109.47399 * 300.00435 * 11 9 7
15 15 N 1.46504 * 109.46673 * 240.00024 * 2 1 3
16 16 C 1.34781 * 120.00094 * 85.00279 * 15 2 1
17 17 O 1.21282 * 119.99826 * 359.97438 * 16 15 2
18 18 C 1.50693 * 120.00148 * 179.97438 * 16 15 2
19 19 H 1.08999 * 109.40289 * 60.17339 * 18 16 15
20 20 C 1.53069 * 109.40120 * 180.02562 * 18 16 15
21 21 C 1.53347 * 108.42562 * 169.03264 * 20 18 16
22 22 C 1.52919 * 108.67049 * 292.46348 * 21 20 18
23 23 N 1.45760 * 110.48848 * 50.75746 * 22 21 20
24 24 C 1.33355 * 124.10363 * 340.92028 * 23 22 21
25 25 O 1.21284 * 118.24559 * 182.22100 * 24 23 22
26 26 H 1.09000 * 109.46938 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.46835 * 299.99924 * 1 2 3
28 28 H 1.08994 * 109.46833 * 59.99706 * 1 2 3
29 29 H 1.08994 * 109.47380 * 54.99205 * 4 2 1
30 30 H 1.09010 * 109.46568 * 294.99755 * 4 2 1
31 31 H 1.09003 * 109.47323 * 95.14144 * 6 5 4
32 32 H 1.08994 * 109.47083 * 215.14139 * 6 5 4
33 33 H 1.09000 * 109.47106 * 335.14270 * 6 5 4
34 34 H 0.97001 * 119.99592 * 180.02562 * 10 9 7
35 35 H 0.97001 * 120.00058 * 264.99684 * 15 2 1
36 36 H 1.09003 * 109.66878 * 288.76086 * 20 18 16
37 37 H 1.08992 * 109.67725 * 49.25568 * 20 18 16
38 38 H 1.08992 * 109.60491 * 52.22439 * 21 20 18
39 39 H 1.08999 * 109.60554 * 172.54823 * 21 20 18
40 40 H 1.09006 * 109.29943 * 171.06706 * 22 21 20
41 41 H 1.08998 * 109.30824 * 290.65010 * 22 21 20
42 42 H 0.97001 * 117.94767 * 160.91873 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2491
5 7 3.5001 -0.8265 1.1904
6 6 4.3345 0.2339 1.7611
7 6 4.0850 -1.9133 0.5971
8 1 3.5271 -2.5066 -0.1123
9 6 5.3948 -2.2523 0.9074
10 7 5.9808 -1.7203 1.9591
11 14 6.3258 -3.4635 -0.1676
12 1 6.4108 -2.9329 -1.5519
13 1 7.6949 -3.6556 0.3744
14 1 5.6115 -4.7654 -0.1796
15 7 2.0183 -0.6906 -1.1962
16 6 2.1470 -0.0183 -2.3572
17 8 1.8582 1.1584 -2.4118
18 6 2.6498 -0.7285 -3.5876
19 1 1.9751 -1.5485 -3.8334
20 6 2.7011 0.2566 -4.7580
21 6 3.4657 -0.4021 -5.9127
22 6 4.9294 -0.5647 -5.5009
23 7 5.0240 -1.2128 -4.1987
24 6 4.0221 -1.2773 -3.3210
25 8 4.2302 -1.8076 -2.2503
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8899
29 1 1.6054 -1.7198 1.2951
30 1 1.7517 -0.1584 2.1369
31 1 4.6184 -0.0350 2.7786
32 1 5.2314 0.3569 1.1541
33 1 3.7744 1.1689 1.7753
34 1 6.8963 -1.9569 2.1756
35 1 2.2490 -1.6318 -1.1527
36 1 1.6878 0.4978 -5.0792
37 1 3.2147 1.1670 -4.4492
38 1 3.0348 -1.3803 -6.1257
39 1 3.4008 0.2272 -6.8003
40 1 5.4473 -1.1715 -6.2437
41 1 5.3996 0.4170 -5.4463
42 1 5.8687 -1.6228 -3.9553
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001669826743.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:53
Heat of formation + Delta-G solvation = -74.139379 kcal
Electronic energy + Delta-G solvation = -24410.005923 eV
Core-core repulsion = 21003.697878 eV
Total energy + Delta-G solvation = -3406.308045 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.79631 -39.98861 -38.11601 -37.28786 -35.65151 -34.05376 -32.99499 -31.71819
-30.47952 -28.03387 -27.31317 -25.97982 -23.68406 -23.57446 -22.22458 -21.26401
-20.01774 -18.80968 -18.30097 -17.84855 -17.44666 -16.83181 -16.82853 -15.89695
-15.68954 -15.45175 -15.09351 -14.98494 -14.94932 -14.51380 -14.36315 -14.15396
-13.74058 -13.41355 -13.06950 -12.88880 -12.83255 -12.61054 -12.53965 -12.29957
-12.20223 -12.12752 -11.98808 -11.89462 -11.76844 -11.71028 -10.85191 -10.59686
-10.38534 -9.93057 -9.80713 -8.67058 -7.67284 -5.10503 1.43771 1.48589
1.52864 1.68030 1.84620 2.44626 2.49726 2.67395 3.49460 3.58508
3.65310 3.74273 3.84838 3.91919 4.10309 4.26084 4.30023 4.43502
4.52931 4.54688 4.75830 4.78250 4.82165 4.87282 4.89871 5.00071
5.06393 5.07748 5.16957 5.29926 5.35446 5.43982 5.68083 5.73319
5.85143 5.93350 6.39246 6.44646 6.76050 7.25042 7.36023 7.40431
7.99673 8.41809 9.37490
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.013684 B = 0.008782 C = 0.005861
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2045.668973 B = 3187.613097 C = 4776.353497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.120 3.880
3 H 0.047 0.953
4 C 0.141 3.859
5 N -0.612 5.612
6 C 0.183 3.817
7 C -0.195 4.195
8 H 0.078 0.922
9 C -0.064 4.064
10 N -0.955 5.955
11 Si 0.964 3.036
12 H -0.265 1.265
13 H -0.318 1.318
14 H -0.289 1.289
15 N -0.682 5.682
16 C 0.520 3.480
17 O -0.587 6.587
18 C -0.118 4.118
19 H 0.149 0.851
20 C -0.098 4.098
21 C -0.126 4.126
22 C 0.102 3.898
23 N -0.720 5.720
24 C 0.501 3.499
25 O -0.542 6.542
26 H 0.068 0.932
27 H 0.079 0.921
28 H 0.048 0.952
29 H 0.060 0.940
30 H 0.067 0.933
31 H 0.007 0.993
32 H 0.004 0.996
33 H 0.019 0.981
34 H 0.237 0.763
35 H 0.408 0.592
36 H 0.090 0.910
37 H 0.055 0.945
38 H 0.086 0.914
39 H 0.116 0.884
40 H 0.105 0.895
41 H 0.065 0.935
42 H 0.398 0.602
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.584 1.566 -17.593 19.638
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.013 3.987
3 H 0.065 0.935
4 C 0.014 3.986
5 N -0.334 5.334
6 C 0.038 3.962
7 C -0.326 4.326
8 H 0.096 0.904
9 C -0.256 4.256
10 N -0.605 5.605
11 Si 0.796 3.204
12 H -0.191 1.191
13 H -0.247 1.247
14 H -0.216 1.216
15 N -0.332 5.332
16 C 0.305 3.695
17 O -0.469 6.469
18 C -0.142 4.142
19 H 0.166 0.834
20 C -0.136 4.136
21 C -0.163 4.163
22 C -0.021 4.021
23 N -0.372 5.372
24 C 0.286 3.714
25 O -0.419 6.419
26 H 0.087 0.913
27 H 0.098 0.902
28 H 0.067 0.933
29 H 0.078 0.922
30 H 0.085 0.915
31 H 0.025 0.975
32 H 0.023 0.977
33 H 0.037 0.963
34 H 0.046 0.954
35 H 0.246 0.754
36 H 0.109 0.891
37 H 0.074 0.926
38 H 0.104 0.896
39 H 0.134 0.866
40 H 0.123 0.877
41 H 0.084 0.916
42 H 0.233 0.767
Dipole moment (debyes) X Y Z Total
from point charges -8.752 2.174 -17.050 19.288
hybrid contribution 1.602 -0.980 0.093 1.881
sum -7.150 1.194 -16.957 18.442
Atomic orbital electron populations
1.21993 0.93274 1.02661 1.02360 1.21721 0.94540 0.96204 0.86279
0.93485 1.21249 0.83415 0.99195 0.94756 1.44109 1.00817 1.20776
1.67728 1.20428 0.92137 0.87516 0.96162 1.19275 0.95890 1.03380
1.14026 0.90419 1.25509 0.99970 1.01902 0.98219 1.70266 1.12637
1.49863 1.27769 0.85376 0.76009 0.78857 0.80167 1.19062 1.24657
1.21612 1.46090 1.63612 1.14892 1.08607 1.20329 0.77342 0.86626
0.85174 1.90614 1.53570 1.16909 1.85821 1.21477 0.95232 1.01892
0.95575 0.83401 1.21481 1.03075 0.96534 0.92550 1.21913 0.93102
1.03012 0.98286 1.21703 0.98888 0.98378 0.83151 1.45504 1.14478
1.58524 1.18738 1.20085 0.87134 0.80063 0.84110 1.91028 1.82788
1.44440 1.23640 0.91326 0.90183 0.93317 0.92195 0.91495 0.97463
0.97674 0.96267 0.95440 0.75389 0.89106 0.92576 0.89574 0.86612
0.87651 0.91622 0.76677
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.03 9.48 71.98 0.68 -3.35 16
2 C 0.12 4.41 2.88 44.99 0.13 4.54 16
3 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16
4 C 0.14 5.65 5.30 86.38 0.46 6.11 16
5 N -0.61 -31.46 2.82 -726.94 -2.05 -33.51 16
6 C 0.18 9.80 8.98 127.77 1.15 10.94 16
7 C -0.20 -10.84 7.50 84.03 0.63 -10.21 16
8 H 0.08 4.18 5.28 -2.91 -0.02 4.17 16
9 C -0.06 -3.80 5.07 84.86 0.43 -3.37 16
10 N -0.96 -60.33 10.70 21.65 0.23 -60.10 16
11 Si 0.96 49.60 28.46 68.60 1.95 51.55 16
12 H -0.27 -13.08 6.58 99.48 0.65 -12.43 16
13 H -0.32 -16.82 7.11 99.48 0.71 -16.11 16
14 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16
15 N -0.68 -25.59 3.97 -442.52 -1.76 -27.34 16
16 C 0.52 18.80 7.03 87.65 0.62 19.41 16
17 O -0.59 -24.16 15.46 -3.04 -0.05 -24.21 16
18 C -0.12 -3.22 2.78 -12.43 -0.03 -3.26 16
19 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16
20 C -0.10 -2.07 4.78 30.73 0.15 -1.92 16
21 C -0.13 -1.61 6.02 30.68 0.18 -1.42 16
22 C 0.10 1.56 7.17 86.49 0.62 2.18 16
23 N -0.72 -18.37 5.45 -467.29 -2.55 -20.92 16
24 C 0.50 16.29 7.28 87.71 0.64 16.92 16
25 O -0.54 -23.11 11.47 -3.04 -0.03 -23.15 16
26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
29 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16
30 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16
31 H 0.01 0.41 7.39 -2.39 -0.02 0.39 16
32 H 0.00 0.27 7.26 -2.39 -0.02 0.25 16
33 H 0.02 0.89 8.03 -2.39 -0.02 0.88 16
34 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16
35 H 0.41 15.92 5.22 -92.71 -0.48 15.44 16
36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
37 H 0.06 1.47 7.73 -2.39 -0.02 1.45 16
38 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16
39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16
41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
42 H 0.40 10.69 8.80 -92.71 -0.82 9.88 16
Total: -1.00 -77.74 328.36 1.08 -76.66
By element:
Atomic # 1 Polarization: 24.75 SS G_CDS: -0.32 Total: 24.43 kcal
Atomic # 6 Polarization: 30.94 SS G_CDS: 5.65 Total: 36.59 kcal
Atomic # 7 Polarization: -135.75 SS G_CDS: -6.12 Total: -141.87 kcal
Atomic # 8 Polarization: -47.28 SS G_CDS: -0.08 Total: -47.36 kcal
Atomic # 14 Polarization: 49.60 SS G_CDS: 1.95 Total: 51.55 kcal
Total: -77.74 1.08 -76.66 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001669826743.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.523 kcal
(2) G-P(sol) polarization free energy of solvation -77.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds