Wall clock time and date at job start Tue Mar 31 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99826 * 2 1 4 4 N 1.34770 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.47073 * 136.05543 * 359.63480 * 4 2 1 6 6 C 1.53754 * 87.88798 * 152.96024 * 5 4 2 7 7 C 1.50699 * 114.27160 * 139.79178 * 6 5 4 8 8 O 1.21289 * 119.99995 * 266.47737 * 7 6 5 9 9 N 1.34774 * 120.00086 * 86.46884 * 7 6 5 10 10 C 1.46506 * 119.99694 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46632 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46799 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46877 * 304.99861 * 12 11 10 14 14 C 1.52999 * 109.46719 * 185.00162 * 12 11 10 15 15 N 1.46492 * 109.47710 * 64.99922 * 12 11 10 16 16 C 1.36940 * 120.00309 * 205.00320 * 15 12 11 17 17 H 1.07995 * 119.99592 * 359.97438 * 16 15 12 18 18 C 1.38810 * 119.99735 * 179.97438 * 16 15 12 19 19 N 1.31619 * 120.00475 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99542 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47057 * 90.00036 * 20 18 16 22 22 H 1.48504 * 109.46835 * 209.99878 * 20 18 16 23 23 H 1.48498 * 109.47355 * 329.99911 * 20 18 16 24 24 C 1.47068 * 136.06023 * 179.97438 * 4 2 1 25 25 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99928 * 1 2 3 27 27 H 1.09004 * 109.47113 * 299.99909 * 1 2 3 28 28 H 1.08996 * 113.46538 * 267.68779 * 5 4 2 29 29 H 1.08992 * 113.47227 * 38.13099 * 5 4 2 30 30 H 1.09004 * 114.39189 * 272.67300 * 6 5 4 31 31 H 0.97001 * 120.00137 * 0.02562 * 9 7 6 32 32 H 1.08989 * 109.47594 * 300.00238 * 10 9 7 33 33 H 1.08999 * 109.47007 * 60.00871 * 10 9 7 34 34 H 1.09001 * 109.47288 * 299.99981 * 11 10 9 35 35 H 1.08991 * 109.47393 * 60.00210 * 11 10 9 36 36 H 1.08991 * 109.47299 * 299.99085 * 14 12 11 37 37 H 1.09003 * 109.47468 * 60.00204 * 14 12 11 38 38 H 1.09007 * 109.47115 * 179.97438 * 14 12 11 39 39 H 0.97008 * 119.99960 * 24.99424 * 15 12 11 40 40 H 0.97003 * 120.00056 * 180.02562 * 19 18 16 41 41 H 1.08999 * 113.47108 * 321.87539 * 24 4 2 42 42 H 1.09003 * 113.46230 * 92.25385 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1645 -2.8718 -0.6972 7 6 3.8800 -4.1037 -0.2058 8 8 4.7143 -4.0118 0.6697 9 7 3.5926 -5.3077 -0.7389 10 6 4.2877 -6.5054 -0.2607 11 6 3.7798 -7.7293 -1.0255 12 6 4.5053 -8.9802 -0.5256 13 1 5.5822 -8.8327 -0.6074 14 6 4.0896 -10.1839 -1.3736 15 7 4.1508 -9.2237 0.8748 16 6 5.0043 -9.9233 1.6855 17 1 5.9386 -10.2959 1.2924 18 6 4.6685 -10.1535 3.0126 19 7 3.5301 -9.6989 3.4918 20 14 5.8325 -11.1085 4.1184 21 1 6.7724 -10.1670 4.7783 22 1 5.0504 -11.8331 5.1521 23 1 6.6000 -12.0845 3.3038 24 6 3.5942 -1.5740 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.7666 -3.0218 1.0086 29 1 0.9553 -2.8286 -0.6040 30 1 3.1235 -2.8023 -1.7843 31 1 2.9255 -5.3813 -1.4393 32 1 5.3593 -6.3936 -0.4252 33 1 4.0953 -6.6363 0.8042 34 1 2.7080 -7.8414 -0.8613 35 1 3.9725 -7.5982 -2.0902 36 1 3.0128 -10.3315 -1.2918 37 1 4.3534 -10.0029 -2.4156 38 1 4.6068 -11.0751 -1.0178 39 1 3.3114 -8.8892 1.2278 40 1 3.2956 -9.8594 4.4193 41 1 4.2287 -0.9386 -0.6177 42 1 4.0008 -1.7311 0.9993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690839407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:32 Heat of formation + Delta-G solvation = -30.927836 kcal Electronic energy + Delta-G solvation = -21851.598854 eV Core-core repulsion = 18447.164602 eV Total energy + Delta-G solvation = -3404.434252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08557 -39.27006 -37.72818 -36.55147 -34.43950 -32.31180 -31.51448 -29.73379 -28.82519 -27.97013 -26.30106 -24.46775 -23.58897 -22.13211 -20.53792 -19.65270 -19.28658 -17.75831 -17.26640 -17.16810 -16.21081 -15.81301 -15.39341 -15.35022 -14.89198 -14.43110 -14.01983 -13.58153 -13.39373 -13.32169 -13.13339 -12.87840 -12.77790 -12.62583 -12.51463 -12.22011 -12.07257 -11.58078 -11.19315 -11.10128 -10.93455 -10.75805 -10.66644 -10.34559 -10.26113 -10.03000 -9.74130 -9.65207 -9.07696 -8.95934 -8.87725 -6.97144 -5.76965 -3.05593 2.28841 2.44293 2.52476 3.24241 3.44520 3.49800 3.50883 3.88337 4.11651 4.50146 4.59602 4.66864 4.80622 4.84097 4.98042 5.06586 5.15417 5.24959 5.30071 5.35222 5.36270 5.51960 5.53821 5.64532 5.73839 5.84097 6.02951 6.14040 6.30011 6.35590 6.42084 6.60768 6.66182 6.83502 7.03226 7.34937 7.52882 7.70706 7.82074 8.22861 8.41533 9.53101 10.09240 10.43703 11.45660 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002968 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.816825 B = 9430.349503 C =10034.307279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.541 3.459 3 O -0.547 6.547 4 N -0.650 5.650 5 C 0.118 3.882 6 C -0.154 4.154 7 C 0.521 3.479 8 O -0.530 6.530 9 N -0.723 5.723 10 C 0.120 3.880 11 C -0.132 4.132 12 C 0.174 3.826 13 H 0.049 0.951 14 C -0.164 4.164 15 N -0.724 5.724 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.283 1.283 24 C 0.124 3.876 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.378 13.209 -13.029 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.332 3.668 3 O -0.424 6.424 4 N -0.386 5.386 5 C -0.005 4.005 6 C -0.176 4.176 7 C 0.305 3.695 8 O -0.406 6.406 9 N -0.374 5.374 10 C -0.003 4.003 11 C -0.171 4.171 12 C 0.063 3.937 13 H 0.067 0.933 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.208 1.208 24 C 0.001 3.999 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.434 13.957 -12.293 19.680 hybrid contribution -0.068 -0.695 0.444 0.827 sum -6.501 13.262 -11.849 18.935 Atomic orbital electron populations 1.21811 0.90940 1.04403 1.05344 1.20419 0.90142 0.81179 0.75060 1.90740 1.70780 1.30278 1.50640 1.49717 1.09788 1.05513 1.73626 1.22979 0.96574 0.79508 1.01476 1.23186 0.97797 0.94263 1.02359 1.19974 0.83054 0.84098 0.82387 1.90775 1.33320 1.86063 1.30406 1.46119 1.42946 1.07376 1.40944 1.21503 0.96257 0.81917 1.00574 1.22057 1.01150 0.95051 0.98815 1.20152 0.96959 0.90447 0.86093 0.93297 1.22428 1.01157 1.00935 0.97863 1.42448 1.23233 1.66069 1.04803 1.19215 0.99658 1.26659 0.91381 0.91220 1.24717 0.97403 1.01521 0.97204 1.69649 1.22798 1.50882 1.14795 0.86226 0.79996 0.79525 0.80654 1.21689 1.21853 1.20825 1.22832 0.83926 0.91040 1.02072 0.90497 0.88632 0.88508 0.88575 0.89195 0.85529 0.76922 0.91713 0.89587 0.91579 0.91913 0.93526 0.94581 0.92720 0.78312 0.93560 0.89772 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.36 36.01 0.37 -0.68 16 2 C 0.54 5.93 8.19 -10.99 -0.09 5.84 16 3 O -0.55 -8.47 17.88 5.56 0.10 -8.37 16 4 N -0.65 -6.36 3.69 -185.05 -0.68 -7.04 16 5 C 0.12 0.86 7.58 -8.36 -0.06 0.79 16 6 C -0.15 -1.28 4.50 -91.13 -0.41 -1.69 16 7 C 0.52 6.40 7.40 -10.99 -0.08 6.32 16 8 O -0.53 -9.19 15.95 5.55 0.09 -9.10 16 9 N -0.72 -8.06 5.56 -60.29 -0.33 -8.39 16 10 C 0.12 1.80 5.56 -4.04 -0.02 1.78 16 11 C -0.13 -1.83 4.87 -26.73 -0.13 -1.96 16 12 C 0.17 3.16 2.89 -67.93 -0.20 2.96 16 13 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 14 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 15 N -0.72 -17.08 4.57 -53.43 -0.24 -17.33 16 16 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 20 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.12 1.29 7.96 -8.51 -0.07 1.22 16 25 H 0.08 0.34 7.31 -51.93 -0.38 -0.04 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.09 0.39 7.94 -51.93 -0.41 -0.02 16 30 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.40 2.99 8.47 -40.82 -0.35 2.64 16 32 H 0.06 1.05 8.14 -51.94 -0.42 0.62 16 33 H 0.09 1.65 7.75 -51.93 -0.40 1.25 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.38 9.63 7.80 -40.82 -0.32 9.31 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.22 7.46 -51.93 -0.39 0.84 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -35.29 356.28 -7.45 -42.74 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.86 Total: 6.61 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.58 Total: 5.20 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.54 Total: -59.74 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.19 Total: -17.47 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.29 -7.45 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690839407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.810 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds