Wall clock time and date at job start Tue Mar 31 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99826 * 2 1 4 4 N 1.34770 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.47073 * 136.05543 * 359.63480 * 4 2 1 6 6 C 1.53754 * 87.88798 * 152.96024 * 5 4 2 7 7 C 1.50699 * 114.27160 * 139.79178 * 6 5 4 8 8 O 1.21289 * 119.99995 * 266.47737 * 7 6 5 9 9 N 1.34774 * 120.00086 * 86.46884 * 7 6 5 10 10 C 1.46506 * 119.99694 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46632 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46799 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46877 * 304.99861 * 12 11 10 14 14 C 1.52999 * 109.46719 * 185.00162 * 12 11 10 15 15 N 1.46492 * 109.47710 * 64.99922 * 12 11 10 16 16 C 1.36940 * 120.00309 * 205.00320 * 15 12 11 17 17 H 1.07995 * 119.99592 * 359.97438 * 16 15 12 18 18 C 1.38810 * 119.99735 * 179.97438 * 16 15 12 19 19 N 1.31619 * 120.00475 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99542 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47057 * 90.00036 * 20 18 16 22 22 H 1.48504 * 109.46835 * 209.99878 * 20 18 16 23 23 H 1.48498 * 109.47355 * 329.99911 * 20 18 16 24 24 C 1.47068 * 136.06023 * 179.97438 * 4 2 1 25 25 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99928 * 1 2 3 27 27 H 1.09004 * 109.47113 * 299.99909 * 1 2 3 28 28 H 1.08996 * 113.46538 * 267.68779 * 5 4 2 29 29 H 1.08992 * 113.47227 * 38.13099 * 5 4 2 30 30 H 1.09004 * 114.39189 * 272.67300 * 6 5 4 31 31 H 0.97001 * 120.00137 * 0.02562 * 9 7 6 32 32 H 1.08989 * 109.47594 * 300.00238 * 10 9 7 33 33 H 1.08999 * 109.47007 * 60.00871 * 10 9 7 34 34 H 1.09001 * 109.47288 * 299.99981 * 11 10 9 35 35 H 1.08991 * 109.47393 * 60.00210 * 11 10 9 36 36 H 1.08991 * 109.47299 * 299.99085 * 14 12 11 37 37 H 1.09003 * 109.47468 * 60.00204 * 14 12 11 38 38 H 1.09007 * 109.47115 * 179.97438 * 14 12 11 39 39 H 0.97008 * 119.99960 * 24.99424 * 15 12 11 40 40 H 0.97003 * 120.00056 * 180.02562 * 19 18 16 41 41 H 1.08999 * 113.47108 * 321.87539 * 24 4 2 42 42 H 1.09003 * 113.46230 * 92.25385 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1645 -2.8718 -0.6972 7 6 3.8800 -4.1037 -0.2058 8 8 4.7143 -4.0118 0.6697 9 7 3.5926 -5.3077 -0.7389 10 6 4.2877 -6.5054 -0.2607 11 6 3.7798 -7.7293 -1.0255 12 6 4.5053 -8.9802 -0.5256 13 1 5.5822 -8.8327 -0.6074 14 6 4.0896 -10.1839 -1.3736 15 7 4.1508 -9.2237 0.8748 16 6 5.0043 -9.9233 1.6855 17 1 5.9386 -10.2959 1.2924 18 6 4.6685 -10.1535 3.0126 19 7 3.5301 -9.6989 3.4918 20 14 5.8325 -11.1085 4.1184 21 1 6.7724 -10.1670 4.7783 22 1 5.0504 -11.8331 5.1521 23 1 6.6000 -12.0845 3.3038 24 6 3.5942 -1.5740 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.7666 -3.0218 1.0086 29 1 0.9553 -2.8286 -0.6040 30 1 3.1235 -2.8023 -1.7843 31 1 2.9255 -5.3813 -1.4393 32 1 5.3593 -6.3936 -0.4252 33 1 4.0953 -6.6363 0.8042 34 1 2.7080 -7.8414 -0.8613 35 1 3.9725 -7.5982 -2.0902 36 1 3.0128 -10.3315 -1.2918 37 1 4.3534 -10.0029 -2.4156 38 1 4.6068 -11.0751 -1.0178 39 1 3.3114 -8.8892 1.2278 40 1 3.2956 -9.8594 4.4193 41 1 4.2287 -0.9386 -0.6177 42 1 4.0008 -1.7311 0.9993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690839407.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:32 Heat of formation + Delta-G solvation = -58.375562 kcal Electronic energy + Delta-G solvation = -21852.789077 eV Core-core repulsion = 18447.164602 eV Total energy + Delta-G solvation = -3405.624475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92748 -40.27316 -38.69778 -37.97544 -35.80542 -34.11566 -32.32943 -31.10934 -30.04232 -29.07916 -27.00729 -25.93838 -25.08682 -23.27659 -21.72581 -20.91649 -20.03787 -19.27124 -18.58557 -18.00272 -17.12671 -16.96553 -16.63977 -16.30372 -16.27096 -15.66299 -15.36835 -15.29308 -14.57766 -14.26362 -14.10570 -14.02151 -13.62533 -13.52599 -13.45265 -13.26896 -13.19663 -12.95022 -12.82375 -12.59483 -12.25361 -12.21818 -12.07067 -11.84488 -11.61154 -11.56117 -11.22194 -10.93727 -10.77445 -10.06759 -9.89525 -8.94765 -7.91240 -5.17004 1.46881 1.47733 1.48697 1.54193 1.55778 1.68354 2.29308 2.58374 3.11231 3.43348 3.47178 3.78518 3.94398 3.96584 4.06473 4.10974 4.27870 4.29897 4.43540 4.44640 4.49677 4.58237 4.63133 4.68457 4.71462 4.83552 4.93292 4.99020 5.05950 5.07865 5.15235 5.28404 5.44672 5.50243 5.56927 5.65667 6.32547 6.57551 6.64105 7.00837 7.30251 7.38821 8.17573 8.38391 9.32179 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002968 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.816825 B = 9430.349503 C =10034.307279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.532 3.468 3 O -0.604 6.604 4 N -0.649 5.649 5 C 0.125 3.875 6 C -0.131 4.131 7 C 0.519 3.481 8 O -0.588 6.588 9 N -0.704 5.704 10 C 0.131 3.869 11 C -0.115 4.115 12 C 0.162 3.838 13 H 0.040 0.960 14 C -0.154 4.154 15 N -0.734 5.734 16 C -0.231 4.231 17 H 0.072 0.928 18 C -0.077 4.077 19 N -0.968 5.968 20 Si 0.963 3.037 21 H -0.293 1.293 22 H -0.297 1.297 23 H -0.270 1.270 24 C 0.109 3.891 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.166 0.834 31 H 0.421 0.579 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.029 0.971 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 12.887 -15.848 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.325 3.675 3 O -0.485 6.485 4 N -0.384 5.384 5 C 0.002 3.998 6 C -0.152 4.152 7 C 0.305 3.695 8 O -0.468 6.468 9 N -0.356 5.356 10 C 0.006 3.994 11 C -0.153 4.153 12 C 0.054 3.946 13 H 0.058 0.942 14 C -0.214 4.214 15 N -0.375 5.375 16 C -0.363 4.363 17 H 0.090 0.910 18 C -0.269 4.269 19 N -0.619 5.619 20 Si 0.793 3.207 21 H -0.221 1.221 22 H -0.223 1.223 23 H -0.195 1.195 24 C -0.015 4.015 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.154 0.846 30 H 0.184 0.816 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.934 13.591 -15.202 21.880 hybrid contribution 0.456 -0.577 1.245 1.446 sum -7.478 13.014 -13.957 20.496 Atomic orbital electron populations 1.21852 0.86984 1.06451 1.06249 1.21362 0.91954 0.80450 0.73732 1.90710 1.72232 1.32305 1.53291 1.49824 1.09429 1.06530 1.72657 1.23114 0.97493 0.77441 1.01725 1.23138 0.97442 0.90496 1.04149 1.20665 0.82239 0.85271 0.81276 1.90763 1.36072 1.86925 1.33068 1.45848 1.42819 1.05884 1.41046 1.21109 0.95921 0.84158 0.98164 1.21902 1.00875 0.91842 1.00678 1.20474 0.97157 0.93281 0.83710 0.94201 1.22269 1.00788 0.98692 0.99613 1.42643 1.22334 1.65594 1.06953 1.19577 0.99771 1.25176 0.91813 0.90994 1.25433 0.99056 1.03590 0.98810 1.69788 1.24577 1.52992 1.14592 0.85289 0.78157 0.78370 0.78891 1.22093 1.22349 1.19451 1.22828 0.84853 0.92644 1.01154 0.87845 0.87188 0.88006 0.89601 0.84571 0.81627 0.74117 0.93294 0.94526 0.90598 0.87552 0.93487 0.90592 0.95151 0.79514 0.94309 0.90016 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.36 71.24 0.74 -0.81 16 2 C 0.53 11.06 8.19 87.66 0.72 11.77 16 3 O -0.60 -18.97 17.88 -3.02 -0.05 -19.03 16 4 N -0.65 -11.73 3.69 -857.77 -3.16 -14.90 16 5 C 0.12 1.43 7.58 83.27 0.63 2.06 16 6 C -0.13 -1.85 4.50 -11.13 -0.05 -1.90 16 7 C 0.52 12.26 7.40 87.66 0.65 12.91 16 8 O -0.59 -21.18 15.95 -3.06 -0.05 -21.23 16 9 N -0.70 -14.13 5.56 -463.06 -2.57 -16.70 16 10 C 0.13 3.83 5.56 86.38 0.48 4.32 16 11 C -0.11 -2.85 4.87 30.60 0.15 -2.70 16 12 C 0.16 5.65 2.89 44.99 0.13 5.78 16 13 H 0.04 1.46 8.08 -2.39 -0.02 1.45 16 14 C -0.15 -4.72 9.49 71.98 0.68 -4.04 16 15 N -0.73 -34.87 4.57 -322.95 -1.48 -36.35 16 16 C -0.23 -12.59 9.93 84.03 0.83 -11.75 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 19 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 20 Si 0.96 46.61 29.55 68.60 2.03 48.63 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 C 0.11 2.25 7.96 83.18 0.66 2.91 16 25 H 0.10 0.46 7.31 -2.39 -0.02 0.44 16 26 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 29 H 0.14 0.40 7.94 -2.39 -0.02 0.38 16 30 H 0.17 1.14 8.14 -2.38 -0.02 1.13 16 31 H 0.42 4.51 8.47 -92.71 -0.79 3.73 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.37 19.05 7.80 -92.70 -0.72 18.33 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.98 7.46 -2.39 -0.02 1.97 16 Total: -1.00 -82.54 356.28 0.60 -81.95 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.49 Total: 21.67 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.09 Total: 14.62 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -6.93 Total: -126.62 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.10 Total: -40.26 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -82.54 0.60 -81.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690839407.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.570 kcal (2) G-P(sol) polarization free energy of solvation -82.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds