Wall clock time and date at job start Tue Mar 31 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47085 * 2 1 4 4 C 1.53003 * 109.47305 * 120.00311 * 2 1 3 5 5 C 1.52993 * 109.47305 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47246 * 299.99753 * 5 4 2 7 7 C 1.53005 * 109.47254 * 59.99707 * 6 5 4 8 8 C 1.52998 * 109.46975 * 300.00527 * 7 6 5 9 9 C 1.53005 * 109.46975 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.46812 * 294.97026 * 9 8 7 11 11 C 1.36934 * 120.00040 * 185.05817 * 10 9 8 12 12 H 1.08003 * 120.00031 * 0.02562 * 11 10 9 13 13 C 1.38815 * 120.00013 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99746 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00159 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47268 * 89.99224 * 15 13 11 17 17 H 1.48496 * 109.47059 * 209.99801 * 15 13 11 18 18 H 1.48501 * 109.46883 * 329.99471 * 15 13 11 19 19 N 1.46499 * 109.47250 * 299.99690 * 8 7 6 20 20 C 1.34782 * 119.99660 * 304.20296 * 19 8 7 21 21 O 1.21345 * 120.00149 * 354.56596 * 20 19 8 22 22 C 1.49456 * 119.99761 * 174.56084 * 20 19 8 23 23 N 1.34774 * 119.99979 * 180.02562 * 22 20 19 24 24 O 1.21354 * 119.99861 * 0.02562 * 22 20 19 25 25 H 1.09007 * 109.47543 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47519 * 299.99804 * 1 2 3 27 27 H 1.09001 * 109.47662 * 60.00164 * 1 2 3 28 28 H 1.09000 * 109.46489 * 299.99910 * 4 2 1 29 29 H 1.08997 * 109.47133 * 59.99055 * 4 2 1 30 30 H 1.08996 * 109.47103 * 179.97438 * 5 4 2 31 31 H 1.08997 * 109.47085 * 59.99689 * 5 4 2 32 32 H 1.09007 * 109.47031 * 299.99969 * 6 5 4 33 33 H 1.09000 * 109.47609 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46976 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.46888 * 60.00180 * 7 6 5 36 36 H 1.08998 * 109.47422 * 54.96751 * 9 8 7 37 37 H 1.08994 * 109.47115 * 174.97704 * 9 8 7 38 38 H 0.97005 * 119.99996 * 5.06865 * 10 9 8 39 39 H 0.96998 * 119.99834 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00446 * 124.20385 * 19 8 7 41 41 H 0.96998 * 119.99693 * 0.02562 * 23 22 20 42 42 H 0.96996 * 119.99789 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7208 1.2495 6 6 4.0805 -1.4416 0.0003 7 6 3.5704 -0.7204 -1.2490 8 6 2.0405 -0.7209 -1.2492 9 6 1.5304 0.0008 -2.4982 10 7 1.9169 1.4127 -2.4383 11 6 1.4804 2.2835 -3.4007 12 1 0.8508 1.9296 -4.2037 13 6 1.8461 3.6214 -3.3436 14 7 1.4261 4.4585 -4.2684 15 14 2.9345 4.2337 -1.9544 16 1 4.3599 4.1177 -2.3543 17 1 2.6155 5.6549 -1.6653 18 1 2.6932 3.4151 -0.7391 19 7 1.5526 -2.1023 -1.2495 20 6 1.9470 -2.9561 -2.2150 21 8 2.6260 -2.5565 -3.1379 22 6 1.5482 -4.3949 -2.1487 23 7 1.9431 -5.2488 -3.1138 24 8 0.8689 -4.7944 -1.2259 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6766 -0.2075 2.1392 29 1 1.6765 -1.7489 1.2493 30 1 3.9332 -1.2342 2.1397 31 1 3.9329 0.3070 1.2498 32 1 3.7175 -2.4695 0.0001 33 1 5.1705 -1.4416 0.0007 34 1 3.9338 -1.2343 -2.1389 35 1 3.9334 0.3074 -1.2488 36 1 1.9658 -0.4576 -3.3861 37 1 0.4442 -0.0768 -2.5446 38 1 2.4822 1.7306 -1.7169 39 1 1.6820 5.3932 -4.2287 40 1 0.9457 -2.4025 -0.5549 41 1 2.4864 -4.9295 -3.8512 42 1 1.6839 -6.1825 -3.0710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698663742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:31 Heat of formation + Delta-G solvation = -67.716238 kcal Electronic energy + Delta-G solvation = -24271.199693 eV Core-core repulsion = 20865.170176 eV Total energy + Delta-G solvation = -3406.029517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11414 -39.49315 -37.79166 -34.77231 -34.27825 -33.37099 -32.39960 -31.52065 -29.61809 -26.77277 -25.30416 -24.95438 -22.44265 -21.84438 -20.78163 -20.52415 -18.83816 -18.73691 -17.71335 -17.10120 -16.15630 -15.79187 -15.30854 -14.87193 -14.41182 -14.38027 -14.21208 -14.04963 -13.77174 -13.43921 -13.28910 -12.80566 -12.55370 -11.97591 -11.85667 -11.73903 -11.69129 -11.44819 -11.29384 -11.12783 -10.89081 -10.72775 -10.47328 -10.23870 -10.09166 -10.07773 -9.96227 -9.56026 -9.37510 -8.89740 -8.82531 -7.17823 -5.73676 -3.08458 1.39561 2.49031 3.21042 3.35933 3.39675 3.45730 3.83402 4.49701 4.60604 4.72743 4.80243 4.83076 5.15717 5.22934 5.46417 5.47730 5.55824 5.59544 5.63924 5.67270 5.73216 5.87911 5.97095 6.03096 6.15077 6.20917 6.25545 6.26941 6.32544 6.37266 6.46328 6.54497 6.64341 6.70076 6.82731 6.90915 7.40178 7.75280 8.00479 8.06642 8.44894 9.23782 9.95817 10.15662 11.45030 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.006040 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.322015 B = 4634.326755 C = 5273.952605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 H 0.093 0.907 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.175 3.825 9 C 0.150 3.850 10 N -0.748 5.748 11 C -0.237 4.237 12 H 0.090 0.910 13 C 0.005 3.995 14 N -0.935 5.935 15 Si 0.880 3.120 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.278 1.278 19 N -0.682 5.682 20 C 0.502 3.498 21 O -0.506 6.506 22 C 0.514 3.486 23 N -0.824 5.824 24 O -0.528 6.528 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.408 0.592 41 H 0.415 0.585 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -17.752 9.651 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.111 0.889 4 C -0.154 4.154 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.169 4.169 8 C 0.089 3.911 9 C 0.022 3.978 10 N -0.396 5.396 11 C -0.367 4.367 12 H 0.107 0.893 13 C -0.191 4.191 14 N -0.583 5.583 15 Si 0.711 3.289 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.204 1.204 19 N -0.336 5.336 20 C 0.282 3.718 21 O -0.381 6.381 22 C 0.293 3.707 23 N -0.390 5.390 24 O -0.404 6.404 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.246 0.754 41 H 0.246 0.754 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.508 -17.440 9.462 19.999 hybrid contribution 0.618 0.175 0.885 1.093 sum 3.126 -17.265 10.347 20.369 Atomic orbital electron populations 1.21878 0.94505 1.01183 1.03140 1.21384 0.96535 1.00540 0.92609 0.88867 1.21646 0.95633 1.00410 0.97692 1.21555 0.95693 1.00942 0.97636 1.21513 0.99957 0.99196 0.94722 1.21953 0.93857 1.02191 0.98870 1.20729 0.94145 0.79248 0.96932 1.21024 0.97450 0.85015 0.94326 1.42635 1.61786 1.04087 1.31054 1.19032 1.25494 0.88942 1.03245 0.89260 1.24627 1.00452 0.95948 0.98045 1.69695 1.49696 1.03742 1.35190 0.86617 0.81299 0.78159 0.82845 1.21067 1.21760 1.20384 1.45899 1.47961 1.11175 1.28531 1.19942 0.81885 0.86519 0.83483 1.90777 1.37239 1.77752 1.32306 1.20380 0.79997 0.87859 0.82513 1.43539 1.55653 1.12572 1.27244 1.90793 1.37247 1.78809 1.33506 0.93377 0.92625 0.90636 0.91725 0.92145 0.92298 0.91832 0.92549 0.92191 0.89433 0.90512 0.93498 0.94926 0.80648 0.93122 0.75422 0.75445 0.75997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.67 37.15 0.32 -1.73 16 2 C -0.09 -1.31 1.78 -90.62 -0.16 -1.47 16 3 H 0.09 1.55 6.67 -51.93 -0.35 1.21 16 4 C -0.12 -1.35 5.03 -26.73 -0.13 -1.48 16 5 C -0.12 -1.39 5.92 -26.74 -0.16 -1.55 16 6 C -0.12 -1.45 5.77 -26.73 -0.15 -1.61 16 7 C -0.13 -2.01 4.33 -26.73 -0.12 -2.13 16 8 C 0.17 2.70 0.11 -131.82 -0.01 2.68 16 9 C 0.15 2.97 4.57 -4.04 -0.02 2.95 16 10 N -0.75 -17.48 4.80 -59.90 -0.29 -17.77 16 11 C -0.24 -6.70 10.47 -15.06 -0.16 -6.86 16 12 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 13 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 14 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 15 Si 0.88 21.95 27.74 -169.99 -4.71 17.23 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 18 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 19 N -0.68 -9.14 3.73 -48.03 -0.18 -9.32 16 20 C 0.50 6.92 7.23 -11.58 -0.08 6.83 16 21 O -0.51 -8.09 12.77 5.50 0.07 -8.02 16 22 C 0.51 6.11 8.16 -11.58 -0.09 6.01 16 23 N -0.82 -6.67 8.87 30.91 0.27 -6.40 16 24 O -0.53 -7.35 17.32 5.49 0.10 -7.26 16 25 H 0.05 0.57 6.78 -51.93 -0.35 0.22 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.24 6.55 -51.93 -0.34 0.90 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.65 6.95 -51.93 -0.36 0.29 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.69 7.54 -51.93 -0.39 0.30 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.47 6.05 -51.93 -0.31 1.16 16 35 H 0.08 1.29 7.08 -51.93 -0.37 0.93 16 36 H 0.05 1.03 6.44 -51.93 -0.33 0.70 16 37 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 38 H 0.36 8.14 3.24 -40.82 -0.13 8.01 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.41 4.96 5.66 -40.82 -0.23 4.72 16 41 H 0.41 2.95 8.30 -40.82 -0.34 2.61 16 42 H 0.41 2.36 8.93 -40.82 -0.36 1.99 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -32.99 321.45 -5.92 -38.90 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -5.93 Total: 14.77 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.87 Total: 1.69 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.58 Total: -62.16 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.17 Total: -15.28 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.99 -5.92 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698663742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.814 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds