Wall clock time and date at job start Tue Mar 31 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47085 * 2 1 4 4 C 1.53003 * 109.47305 * 120.00311 * 2 1 3 5 5 C 1.52993 * 109.47305 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47246 * 299.99753 * 5 4 2 7 7 C 1.53005 * 109.47254 * 59.99707 * 6 5 4 8 8 C 1.52998 * 109.46975 * 300.00527 * 7 6 5 9 9 C 1.53005 * 109.46975 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.46812 * 294.97026 * 9 8 7 11 11 C 1.36934 * 120.00040 * 185.05817 * 10 9 8 12 12 H 1.08003 * 120.00031 * 0.02562 * 11 10 9 13 13 C 1.38815 * 120.00013 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99746 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00159 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47268 * 89.99224 * 15 13 11 17 17 H 1.48496 * 109.47059 * 209.99801 * 15 13 11 18 18 H 1.48501 * 109.46883 * 329.99471 * 15 13 11 19 19 N 1.46499 * 109.47250 * 299.99690 * 8 7 6 20 20 C 1.34782 * 119.99660 * 304.20296 * 19 8 7 21 21 O 1.21345 * 120.00149 * 354.56596 * 20 19 8 22 22 C 1.49456 * 119.99761 * 174.56084 * 20 19 8 23 23 N 1.34774 * 119.99979 * 180.02562 * 22 20 19 24 24 O 1.21354 * 119.99861 * 0.02562 * 22 20 19 25 25 H 1.09007 * 109.47543 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47519 * 299.99804 * 1 2 3 27 27 H 1.09001 * 109.47662 * 60.00164 * 1 2 3 28 28 H 1.09000 * 109.46489 * 299.99910 * 4 2 1 29 29 H 1.08997 * 109.47133 * 59.99055 * 4 2 1 30 30 H 1.08996 * 109.47103 * 179.97438 * 5 4 2 31 31 H 1.08997 * 109.47085 * 59.99689 * 5 4 2 32 32 H 1.09007 * 109.47031 * 299.99969 * 6 5 4 33 33 H 1.09000 * 109.47609 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46976 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.46888 * 60.00180 * 7 6 5 36 36 H 1.08998 * 109.47422 * 54.96751 * 9 8 7 37 37 H 1.08994 * 109.47115 * 174.97704 * 9 8 7 38 38 H 0.97005 * 119.99996 * 5.06865 * 10 9 8 39 39 H 0.96998 * 119.99834 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00446 * 124.20385 * 19 8 7 41 41 H 0.96998 * 119.99693 * 0.02562 * 23 22 20 42 42 H 0.96996 * 119.99789 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7208 1.2495 6 6 4.0805 -1.4416 0.0003 7 6 3.5704 -0.7204 -1.2490 8 6 2.0405 -0.7209 -1.2492 9 6 1.5304 0.0008 -2.4982 10 7 1.9169 1.4127 -2.4383 11 6 1.4804 2.2835 -3.4007 12 1 0.8508 1.9296 -4.2037 13 6 1.8461 3.6214 -3.3436 14 7 1.4261 4.4585 -4.2684 15 14 2.9345 4.2337 -1.9544 16 1 4.3599 4.1177 -2.3543 17 1 2.6155 5.6549 -1.6653 18 1 2.6932 3.4151 -0.7391 19 7 1.5526 -2.1023 -1.2495 20 6 1.9470 -2.9561 -2.2150 21 8 2.6260 -2.5565 -3.1379 22 6 1.5482 -4.3949 -2.1487 23 7 1.9431 -5.2488 -3.1138 24 8 0.8689 -4.7944 -1.2259 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6766 -0.2075 2.1392 29 1 1.6765 -1.7489 1.2493 30 1 3.9332 -1.2342 2.1397 31 1 3.9329 0.3070 1.2498 32 1 3.7175 -2.4695 0.0001 33 1 5.1705 -1.4416 0.0007 34 1 3.9338 -1.2343 -2.1389 35 1 3.9334 0.3074 -1.2488 36 1 1.9658 -0.4576 -3.3861 37 1 0.4442 -0.0768 -2.5446 38 1 2.4822 1.7306 -1.7169 39 1 1.6820 5.3932 -4.2287 40 1 0.9457 -2.4025 -0.5549 41 1 2.4864 -4.9295 -3.8512 42 1 1.6839 -6.1825 -3.0710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698663742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:30 Heat of formation + Delta-G solvation = -94.046818 kcal Electronic energy + Delta-G solvation = -24272.341472 eV Core-core repulsion = 20865.170176 eV Total energy + Delta-G solvation = -3407.171297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26419 -40.54198 -38.91883 -36.51166 -35.32249 -34.44716 -33.62389 -33.38239 -31.09607 -28.05290 -26.79775 -26.01716 -24.26354 -23.08145 -21.90039 -21.59500 -19.99274 -19.80614 -19.73182 -18.00960 -17.19604 -16.99217 -16.62531 -16.26693 -16.06882 -15.51290 -15.40910 -15.29693 -15.04163 -14.99599 -14.54968 -14.38664 -13.83575 -13.41404 -13.29379 -13.07175 -12.91390 -12.82527 -12.74165 -12.49358 -12.36170 -12.12784 -11.89316 -11.80274 -11.44133 -11.22486 -11.07286 -10.95447 -10.88980 -10.48309 -10.13246 -9.27811 -8.02366 -5.35657 0.36517 1.34939 1.40139 1.45292 1.47886 2.16445 2.47745 2.84298 3.28616 3.49804 3.64991 3.69505 3.72134 3.79727 4.09729 4.16129 4.36911 4.43393 4.48369 4.57007 4.65669 4.84343 4.86643 4.94133 5.05264 5.05567 5.13438 5.18179 5.26098 5.28998 5.31348 5.43963 5.47670 5.52965 5.58911 5.74666 5.95458 6.20392 6.36070 6.85403 7.03640 7.07574 7.80818 8.02766 9.19525 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.006040 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.322015 B = 4634.326755 C = 5273.952605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.109 4.109 7 C -0.130 4.130 8 C 0.186 3.814 9 C 0.152 3.848 10 N -0.743 5.743 11 C -0.231 4.231 12 H 0.050 0.950 13 C -0.060 4.060 14 N -0.984 5.984 15 Si 0.949 3.051 16 H -0.279 1.279 17 H -0.293 1.293 18 H -0.246 1.246 19 N -0.673 5.673 20 C 0.499 3.501 21 O -0.531 6.531 22 C 0.520 3.480 23 N -0.800 5.800 24 O -0.547 6.547 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.367 0.633 39 H 0.258 0.742 40 H 0.418 0.582 41 H 0.422 0.578 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -19.565 12.611 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.147 4.147 7 C -0.168 4.168 8 C 0.100 3.900 9 C 0.024 3.976 10 N -0.390 5.390 11 C -0.362 4.362 12 H 0.068 0.932 13 C -0.252 4.252 14 N -0.635 5.635 15 Si 0.776 3.224 16 H -0.205 1.205 17 H -0.220 1.220 18 H -0.170 1.170 19 N -0.328 5.328 20 C 0.280 3.720 21 O -0.408 6.408 22 C 0.298 3.702 23 N -0.367 5.367 24 O -0.425 6.425 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.202 0.798 39 H 0.067 0.933 40 H 0.257 0.743 41 H 0.254 0.746 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.427 -19.336 12.433 23.242 hybrid contribution 0.277 0.662 -0.205 0.746 sum 3.704 -18.674 12.228 22.627 Atomic orbital electron populations 1.21845 0.94175 1.02192 1.02245 1.21359 0.96805 0.99470 0.93335 0.91108 1.21624 0.95733 1.00904 0.96436 1.21574 0.95503 1.00801 0.97858 1.21469 1.00568 0.99068 0.93563 1.21900 0.93530 1.01376 0.99984 1.20425 0.94344 0.80009 0.95257 1.21034 0.96804 0.83506 0.96207 1.42497 1.61562 1.04925 1.30048 1.18955 1.24284 0.89880 1.03057 0.93185 1.25451 1.02526 0.96037 1.01138 1.69885 1.51757 1.04069 1.37760 0.85501 0.78922 0.77538 0.80454 1.20529 1.21989 1.16994 1.45744 1.48001 1.10179 1.28843 1.20381 0.81215 0.87543 0.82884 1.90778 1.38356 1.78437 1.33236 1.19951 0.80172 0.87043 0.83066 1.43402 1.54298 1.12891 1.26131 1.90794 1.38477 1.78754 1.34500 0.91459 0.90951 0.94063 0.89968 0.90771 0.89836 0.92375 0.91977 0.91200 0.91301 0.92200 0.95844 0.95774 0.79822 0.93317 0.74283 0.74624 0.74204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.67 71.98 0.62 -3.18 16 2 C -0.09 -2.42 1.78 -10.79 -0.02 -2.44 16 3 H 0.07 2.23 6.67 -2.39 -0.02 2.22 16 4 C -0.11 -2.13 5.03 30.59 0.15 -1.98 16 5 C -0.12 -2.32 5.92 30.59 0.18 -2.14 16 6 C -0.11 -2.43 5.77 30.60 0.18 -2.26 16 7 C -0.13 -3.88 4.33 30.60 0.13 -3.74 16 8 C 0.19 5.60 0.11 3.61 0.00 5.60 16 9 C 0.15 6.19 4.57 86.38 0.39 6.59 16 10 N -0.74 -35.37 4.80 -343.44 -1.65 -37.02 16 11 C -0.23 -13.53 10.47 84.03 0.88 -12.65 16 12 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 13 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 14 N -0.98 -64.04 13.97 21.65 0.30 -63.74 16 15 Si 0.95 45.48 27.74 68.60 1.90 47.39 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 18 H -0.25 -10.37 6.52 99.48 0.65 -9.72 16 19 N -0.67 -17.16 3.73 -424.22 -1.58 -18.74 16 20 C 0.50 13.28 7.23 87.27 0.63 13.91 16 21 O -0.53 -17.00 12.77 -3.23 -0.04 -17.04 16 22 C 0.52 11.41 8.16 87.27 0.71 12.13 16 23 N -0.80 -11.31 8.87 -174.49 -1.55 -12.85 16 24 O -0.55 -14.05 17.32 -3.26 -0.06 -14.10 16 25 H 0.07 1.45 6.78 -2.38 -0.02 1.43 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.34 6.55 -2.39 -0.02 1.33 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.28 6.95 -2.39 -0.02 1.26 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.33 7.54 -2.38 -0.02 1.31 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 2.31 6.05 -2.39 -0.01 2.30 16 35 H 0.06 1.97 7.08 -2.39 -0.02 1.96 16 36 H 0.02 1.08 6.44 -2.39 -0.02 1.06 16 37 H 0.02 1.03 6.71 -2.39 -0.02 1.01 16 38 H 0.37 16.45 3.24 -92.70 -0.30 16.14 16 39 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 40 H 0.42 9.18 5.66 -92.71 -0.53 8.65 16 41 H 0.42 5.25 8.30 -92.71 -0.77 4.48 16 42 H 0.42 3.81 8.93 -92.71 -0.83 2.99 16 Total: -1.00 -73.88 321.45 0.27 -73.62 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -1.40 Total: 35.79 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.33 Total: 6.71 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -4.47 Total: -132.35 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.10 Total: -31.14 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.39 kcal Total: -73.88 0.27 -73.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698663742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.430 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds