Wall clock time and date at job start Tue Mar 31 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46984 * 2 1 4 4 C 1.52993 * 109.47360 * 239.99813 * 2 1 3 5 5 C 1.53000 * 109.47378 * 175.00158 * 4 2 1 6 6 N 1.46506 * 109.47098 * 180.02562 * 5 4 2 7 7 C 1.36936 * 119.99769 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00079 * 179.97438 * 7 6 5 10 10 N 1.31626 * 119.99919 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00234 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47371 * 89.99731 * 11 9 7 13 13 H 1.48495 * 109.46828 * 210.00104 * 11 9 7 14 14 H 1.48504 * 109.46642 * 329.99606 * 11 9 7 15 15 N 1.46498 * 109.46965 * 119.99757 * 2 1 3 16 16 C 1.34778 * 120.00167 * 275.00270 * 15 2 1 17 17 O 1.21285 * 119.99811 * 359.97438 * 16 15 2 18 18 C 1.50691 * 120.00249 * 180.02562 * 16 15 2 19 19 C 1.52999 * 110.21606 * 276.92976 * 18 16 15 20 20 C 1.54480 * 110.24857 * 154.99769 * 18 16 15 21 21 C 1.54627 * 101.76536 * 266.32845 * 20 18 16 22 22 C 1.51286 * 104.19454 * 335.20174 * 21 20 18 23 23 O 1.21279 * 124.93933 * 195.99132 * 22 21 20 24 24 N 1.34413 * 110.11622 * 16.25141 * 22 21 20 25 25 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47070 * 300.00735 * 1 2 3 27 27 H 1.09005 * 109.46624 * 60.00088 * 1 2 3 28 28 H 1.09007 * 109.47111 * 295.00353 * 4 2 1 29 29 H 1.09003 * 109.47097 * 55.00105 * 4 2 1 30 30 H 1.08996 * 109.46838 * 299.99855 * 5 4 2 31 31 H 1.08994 * 109.47279 * 59.99953 * 5 4 2 32 32 H 0.96998 * 119.99903 * 359.97438 * 6 5 4 33 33 H 0.96992 * 119.99694 * 179.97438 * 10 9 7 34 34 H 0.97003 * 120.00178 * 95.00112 * 15 2 1 35 35 H 1.09005 * 109.46782 * 298.06365 * 19 18 16 36 36 H 1.09003 * 109.47542 * 58.06729 * 19 18 16 37 37 H 1.09000 * 109.47356 * 178.06977 * 19 18 16 38 38 H 1.09003 * 110.97169 * 148.21159 * 20 18 16 39 39 H 1.08999 * 110.97225 * 24.44774 * 20 18 16 40 40 H 1.09004 * 110.48832 * 216.52571 * 21 20 18 41 41 H 1.08997 * 110.48725 * 93.87473 * 21 20 18 42 42 H 0.96999 * 124.35074 * 180.40767 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5101 7 6 5.3952 -1.3393 -2.7800 8 1 6.0937 -0.8592 -2.1107 9 6 5.8580 -1.9936 -3.9134 10 7 5.0068 -2.5801 -4.7284 11 14 7.6887 -2.0431 -4.2813 12 1 8.2890 -3.2437 -3.6462 13 1 7.8968 -2.1039 -5.7504 14 1 8.3355 -0.8209 -3.7399 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8590 1.1587 2.4115 18 6 2.6498 -0.7284 3.5875 19 6 1.5021 -1.4692 4.2765 20 6 3.2952 0.2819 4.5618 21 6 4.7848 0.2057 4.1540 22 6 4.9300 -1.1667 3.5342 23 8 5.9850 -1.7304 3.3342 24 7 3.7199 -1.6679 3.2321 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.7517 -1.7716 -1.2055 29 1 1.6055 -0.2617 -2.1369 30 1 3.8532 0.4369 -1.3573 31 1 3.9995 -1.0728 -0.4259 32 1 3.4259 -1.7350 -3.1110 33 1 5.3302 -3.0370 -5.5205 34 1 2.2491 -1.6317 1.1527 35 1 0.7471 -0.7514 4.5974 36 1 1.0562 -2.1780 3.5786 37 1 1.8852 -2.0060 5.1444 38 1 3.1575 -0.0315 5.5966 39 1 2.8983 1.2847 4.4034 40 1 5.4256 0.2979 5.0310 41 1 5.0208 0.9805 3.4246 42 1 3.5727 -2.5386 2.8308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699135240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:50 Heat of formation + Delta-G solvation = -99.779757 kcal Electronic energy + Delta-G solvation = -23080.745412 eV Core-core repulsion = 19673.325517 eV Total energy + Delta-G solvation = -3407.419896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.19115 -40.28946 -38.19418 -37.39902 -36.16486 -33.71361 -32.59376 -32.12378 -31.39971 -29.45230 -26.10836 -25.86075 -24.42390 -23.16832 -21.98188 -21.70181 -21.04256 -19.46207 -18.99885 -17.86321 -17.40564 -16.76129 -16.47014 -16.18464 -15.64881 -15.51563 -15.26048 -15.22516 -14.92886 -14.83319 -14.31723 -14.25356 -13.73311 -13.57354 -13.36895 -13.18402 -13.12723 -12.93221 -12.92089 -12.44372 -12.30407 -12.12563 -12.06419 -12.00736 -11.96785 -11.67988 -11.45657 -11.05182 -11.00614 -10.17313 -10.10035 -9.06596 -8.01623 -5.30651 1.38334 1.42908 1.44502 1.48976 1.52997 2.08465 2.28025 2.50757 3.19238 3.31873 3.44598 3.54885 3.67554 3.83110 4.01639 4.08888 4.11721 4.33782 4.34653 4.52923 4.61915 4.65732 4.70716 4.78678 4.80315 4.84977 4.97421 4.99391 5.07416 5.16096 5.19434 5.23281 5.31776 5.42361 5.50173 5.66001 5.87417 6.21501 6.45900 7.09836 7.13842 7.28216 8.02017 8.26905 9.21440 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.004673 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.675653 B = 5990.350014 C = 7272.861049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.150 3.850 3 H 0.069 0.931 4 C -0.119 4.119 5 C 0.156 3.844 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.065 0.935 9 C -0.067 4.067 10 N -0.964 5.964 11 Si 0.969 3.031 12 H -0.286 1.286 13 H -0.288 1.288 14 H -0.274 1.274 15 N -0.709 5.709 16 C 0.509 3.491 17 O -0.563 6.563 18 C 0.143 3.857 19 C -0.145 4.145 20 C -0.106 4.106 21 C -0.157 4.157 22 C 0.513 3.487 23 O -0.579 6.579 24 N -0.712 5.712 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.004 0.996 31 H 0.014 0.986 32 H 0.377 0.623 33 H 0.254 0.746 34 H 0.406 0.594 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.558 3.690 21.679 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 H 0.087 0.913 4 C -0.157 4.157 5 C 0.029 3.971 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.083 0.917 9 C -0.260 4.260 10 N -0.615 5.615 11 Si 0.798 3.202 12 H -0.213 1.213 13 H -0.214 1.214 14 H -0.200 1.200 15 N -0.359 5.359 16 C 0.294 3.706 17 O -0.441 6.441 18 C 0.053 3.947 19 C -0.203 4.203 20 C -0.144 4.144 21 C -0.197 4.197 22 C 0.301 3.699 23 O -0.459 6.459 24 N -0.369 5.369 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.022 0.978 31 H 0.032 0.968 32 H 0.209 0.791 33 H 0.063 0.937 34 H 0.242 0.758 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -12.037 4.407 21.670 25.177 hybrid contribution 1.079 -1.070 -1.292 1.994 sum -10.958 3.337 20.378 23.377 Atomic orbital electron populations 1.22059 0.92953 1.03089 1.02729 1.20871 0.95260 0.96297 0.83098 0.91258 1.21915 0.94147 1.01830 0.97847 1.20723 0.93798 0.93962 0.88573 1.42514 1.04398 1.65337 1.26412 1.19530 0.85305 1.28084 1.05422 0.91729 1.25497 1.01909 1.00955 0.97667 1.69788 1.34510 1.41634 1.15529 0.85208 0.80229 0.77905 0.76852 1.21330 1.21411 1.19952 1.46106 1.65938 1.14518 1.09372 1.21182 0.77105 0.87025 0.85268 1.90689 1.51798 1.16581 1.85060 1.21385 0.90098 0.90752 0.92417 1.22082 0.95619 1.00959 1.01616 1.22734 0.91715 1.00260 0.99686 1.22452 1.00059 0.93631 1.03562 1.21478 0.82899 0.88807 0.76674 1.90769 1.31198 1.67194 1.56733 1.46355 1.06441 1.20352 1.63776 0.91052 0.92434 0.90699 0.90335 0.89950 0.97773 0.96802 0.79095 0.93744 0.75845 0.89143 0.90686 0.88652 0.85706 0.87675 0.85650 0.88514 0.74380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.48 71.98 0.68 -2.20 16 2 C 0.15 3.66 2.57 44.99 0.12 3.78 16 3 H 0.07 2.01 7.58 -2.38 -0.02 1.99 16 4 C -0.12 -3.50 4.87 30.59 0.15 -3.36 16 5 C 0.16 6.37 6.15 86.38 0.53 6.90 16 6 N -0.74 -38.69 5.60 -343.45 -1.92 -40.61 16 7 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 8 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 9 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 10 N -0.96 -59.47 13.06 21.65 0.28 -59.19 16 11 Si 0.97 47.71 29.55 68.60 2.03 49.74 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 15 N -0.71 -15.44 4.44 -442.54 -1.97 -17.41 16 16 C 0.51 11.13 6.72 87.65 0.59 11.72 16 17 O -0.56 -15.67 15.30 -3.05 -0.05 -15.72 16 18 C 0.14 2.17 1.11 3.31 0.00 2.18 16 19 C -0.14 -1.22 8.79 71.98 0.63 -0.59 16 20 C -0.11 -1.39 6.14 31.65 0.19 -1.20 16 21 C -0.16 -2.85 6.85 30.59 0.21 -2.64 16 22 C 0.51 13.16 8.43 87.90 0.74 13.90 16 23 O -0.58 -21.15 18.03 -3.03 -0.05 -21.21 16 24 N -0.71 -13.37 4.98 -423.37 -2.11 -15.48 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.01 0.58 7.75 -2.39 -0.02 0.56 16 32 H 0.38 20.31 7.67 -92.71 -0.71 19.60 16 33 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.41 7.89 8.00 -92.71 -0.74 7.14 16 35 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.12 0.85 7.91 -2.39 -0.02 0.83 16 39 H 0.10 1.57 6.88 -2.39 -0.02 1.56 16 40 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.42 7.03 8.80 -92.71 -0.82 6.21 16 Total: -1.00 -78.00 349.17 0.14 -77.86 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -1.23 Total: 30.90 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.15 Total: 11.11 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -5.71 Total: -132.69 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.10 Total: -36.92 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -78.00 0.14 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699135240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.919 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds