Wall clock time and date at job start Tue Mar 31 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46458 * 2 1 4 4 C 1.53003 * 109.46569 * 240.00408 * 2 1 3 5 5 N 1.46502 * 109.46486 * 184.99767 * 4 2 1 6 6 C 1.46503 * 119.99801 * 270.00066 * 5 4 2 7 7 C 1.36941 * 120.00083 * 90.00365 * 5 4 2 8 8 H 1.07997 * 119.99687 * 21.56277 * 7 5 4 9 9 C 1.38816 * 119.99834 * 201.56943 * 7 5 4 10 10 N 1.31614 * 119.99906 * 12.81687 * 9 7 5 11 11 Si 1.86802 * 119.99479 * 192.81841 * 9 7 5 12 12 H 1.48500 * 109.47175 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46969 * 120.00031 * 11 9 7 14 14 H 1.48506 * 109.46765 * 239.99633 * 11 9 7 15 15 N 1.46494 * 109.46915 * 120.00462 * 2 1 3 16 16 C 1.34779 * 120.00018 * 274.99207 * 15 2 1 17 17 O 1.21276 * 120.00003 * 0.02562 * 16 15 2 18 18 C 1.50700 * 120.00141 * 180.02562 * 16 15 2 19 19 H 1.09000 * 109.29945 * 319.59443 * 18 16 15 20 20 C 1.52918 * 109.29722 * 78.96799 * 18 16 15 21 21 C 1.53349 * 108.67273 * 171.06571 * 20 18 16 22 22 C 1.53069 * 108.42379 * 292.47043 * 21 20 18 23 23 C 1.50174 * 109.89205 * 48.90194 * 22 21 20 24 24 O 1.21283 * 118.24252 * 162.44295 * 23 22 21 25 25 N 1.33352 * 123.51040 * 342.41404 * 23 22 21 26 26 H 1.08998 * 109.47407 * 59.99792 * 1 2 3 27 27 H 1.09006 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47157 * 299.99336 * 1 2 3 29 29 H 1.08995 * 109.47395 * 304.99738 * 4 2 1 30 30 H 1.08995 * 109.47046 * 65.00118 * 4 2 1 31 31 H 1.08999 * 109.47196 * 94.10991 * 6 5 4 32 32 H 1.09001 * 109.46543 * 214.11246 * 6 5 4 33 33 H 1.09000 * 109.47212 * 334.10524 * 6 5 4 34 34 H 0.97001 * 119.99526 * 180.02562 * 10 9 7 35 35 H 0.97001 * 120.00154 * 95.00383 * 15 2 1 36 36 H 1.08998 * 109.60756 * 290.82319 * 20 18 16 37 37 H 1.08999 * 109.60406 * 51.31112 * 20 18 16 38 38 H 1.09007 * 109.67407 * 172.73727 * 21 20 18 39 39 H 1.08992 * 109.70373 * 52.22123 * 21 20 18 40 40 H 1.09003 * 109.39944 * 288.77022 * 22 21 20 41 41 H 1.09000 * 109.40100 * 169.03117 * 22 21 20 42 42 H 0.97000 * 117.95272 * 182.24591 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2343 -1.7614 7 6 4.0850 -1.9158 -0.6025 8 1 3.5296 -2.8361 -0.4977 9 6 5.3918 -1.8373 -0.1410 10 7 5.9828 -0.6662 -0.0343 11 14 6.3114 -3.3940 0.3287 12 1 5.4309 -4.5713 0.1193 13 1 7.5249 -3.5261 -0.5170 14 1 6.7094 -3.3217 1.7576 15 7 2.0183 -0.6907 1.1961 16 6 2.1472 -0.0184 2.3571 17 8 1.8584 1.1582 2.4117 18 6 2.6500 -0.7287 3.5874 19 1 2.2084 -1.7242 3.6344 20 6 4.1716 -0.8587 3.5094 21 6 4.6898 -1.3762 4.8568 22 6 4.4638 -0.2901 5.9115 23 6 3.0521 0.2153 5.8300 24 8 2.6064 0.8283 6.7769 25 7 2.2624 0.0267 4.7721 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6053 -1.7197 -1.2953 30 1 1.7515 -0.1582 -2.1370 31 1 4.6004 0.9469 -0.9807 32 1 5.2412 -0.2024 -2.1795 33 1 3.7817 0.7472 -2.5486 34 1 6.8961 -0.6114 0.2879 35 1 2.2490 -1.6318 1.1525 36 1 4.4388 -1.5617 2.7205 37 1 4.6116 0.1160 3.2984 38 1 5.7545 -1.5974 4.7800 39 1 4.1469 -2.2787 5.1372 40 1 5.1545 0.5346 5.7356 41 1 4.6430 -0.7056 6.9031 42 1 1.3746 0.4169 4.7921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699452602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:48 Heat of formation + Delta-G solvation = -81.785517 kcal Electronic energy + Delta-G solvation = -24040.516075 eV Core-core repulsion = 20633.876468 eV Total energy + Delta-G solvation = -3406.639607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75100 -40.33481 -38.13137 -37.23276 -35.68448 -33.98904 -33.22588 -31.97352 -30.40103 -27.99124 -27.31025 -26.30998 -23.84703 -23.54809 -22.15267 -21.24299 -20.12014 -18.90324 -18.49968 -17.95418 -17.48435 -16.75190 -16.52522 -16.24768 -15.81147 -15.44715 -15.20015 -15.04376 -14.95994 -14.60943 -14.43258 -14.24183 -13.80985 -13.33696 -13.06187 -13.03248 -12.83519 -12.68163 -12.57579 -12.47272 -12.12030 -12.00397 -11.93293 -11.90440 -11.85286 -11.61348 -11.22788 -10.74057 -10.51845 -10.13549 -9.83348 -8.70197 -7.67742 -5.15238 1.48695 1.52744 1.60803 1.64040 1.66008 2.05342 2.54549 2.60726 3.47050 3.54075 3.62911 3.70612 3.80712 3.82914 4.06938 4.18300 4.25557 4.44967 4.49289 4.57912 4.74637 4.79737 4.80694 4.87958 4.94620 4.98270 5.04071 5.06254 5.20955 5.26755 5.38009 5.43182 5.62869 5.73288 5.76463 5.79440 6.22156 6.42356 6.73299 7.08488 7.24979 7.38254 7.97014 8.44694 9.35401 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.007480 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.736074 B = 3742.538747 C = 5210.137534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 H 0.037 0.963 4 C 0.142 3.858 5 N -0.610 5.610 6 C 0.179 3.821 7 C -0.248 4.248 8 H 0.082 0.918 9 C -0.036 4.036 10 N -0.928 5.928 11 Si 0.943 3.057 12 H -0.263 1.263 13 H -0.312 1.312 14 H -0.283 1.283 15 N -0.676 5.676 16 C 0.501 3.499 17 O -0.593 6.593 18 C 0.135 3.865 19 H 0.132 0.868 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.130 4.130 23 C 0.521 3.479 24 O -0.605 6.605 25 N -0.694 5.694 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.069 0.931 31 H -0.008 1.008 32 H 0.019 0.981 33 H 0.022 0.978 34 H 0.242 0.758 35 H 0.410 0.590 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 -6.114 3.898 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.055 0.945 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.034 3.966 7 C -0.378 4.378 8 H 0.099 0.901 9 C -0.232 4.232 10 N -0.575 5.575 11 Si 0.773 3.227 12 H -0.187 1.187 13 H -0.240 1.240 14 H -0.209 1.209 15 N -0.325 5.325 16 C 0.286 3.714 17 O -0.475 6.475 18 C 0.026 3.974 19 H 0.149 0.851 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.170 4.170 23 C 0.310 3.690 24 O -0.488 6.488 25 N -0.343 5.343 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.010 0.990 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.247 0.753 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.141 0.859 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.440 -5.081 4.391 9.304 hybrid contribution 0.805 -0.260 -0.068 0.849 sum -5.634 -5.341 4.322 8.886 Atomic orbital electron populations 1.22027 0.93823 1.02822 1.01892 1.21718 0.94013 0.96123 0.86758 0.94497 1.21366 0.83412 0.99439 0.94271 1.44111 1.00674 1.22063 1.66420 1.20475 0.92773 0.90070 0.93302 1.19452 0.96682 0.90254 1.31402 0.90078 1.25506 0.99435 0.97742 1.00509 1.70275 1.12676 1.23280 1.51261 0.85579 0.78560 0.81144 0.77420 1.18728 1.24030 1.20912 1.45685 1.64001 1.14496 1.08290 1.21012 0.77279 0.87028 0.86074 1.90649 1.53153 1.17639 1.86011 1.20976 0.97936 0.96013 0.82442 0.85095 1.21715 0.90951 1.02612 1.00335 1.21662 1.03643 0.98135 0.91454 1.21710 0.91027 1.00939 1.03292 1.20748 0.89176 0.78162 0.80911 1.90709 1.75779 1.44563 1.37722 1.45275 1.18476 1.54504 1.16084 0.90398 0.90684 0.94310 0.91058 0.91304 0.98950 0.96203 0.95975 0.94854 0.75268 0.88973 0.93547 0.88963 0.88534 0.88101 0.85909 0.76635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.48 71.98 0.68 -3.08 16 2 C 0.12 4.04 2.88 44.99 0.13 4.17 16 3 H 0.04 1.53 7.58 -2.39 -0.02 1.51 16 4 C 0.14 4.69 5.36 86.38 0.46 5.15 16 5 N -0.61 -26.09 2.82 -726.93 -2.05 -28.14 16 6 C 0.18 8.30 9.01 127.77 1.15 9.46 16 7 C -0.25 -11.04 8.02 84.03 0.67 -10.36 16 8 H 0.08 3.35 7.85 -2.91 -0.02 3.33 16 9 C -0.04 -1.71 5.10 84.86 0.43 -1.28 16 10 N -0.93 -48.89 10.62 21.65 0.23 -48.66 16 11 Si 0.94 38.41 29.57 68.60 2.03 40.43 16 12 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 13 H -0.31 -13.78 7.11 99.48 0.71 -13.07 16 14 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 15 N -0.68 -22.26 4.49 -442.54 -1.99 -24.24 16 16 C 0.50 17.70 6.95 87.66 0.61 18.31 16 17 O -0.59 -25.82 16.04 -3.02 -0.05 -25.87 16 18 C 0.13 3.78 3.46 44.36 0.15 3.94 16 19 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 20 C -0.12 -3.49 5.29 30.68 0.16 -3.33 16 21 C -0.11 -2.44 6.03 30.73 0.19 -2.25 16 22 C -0.13 -3.07 6.03 29.71 0.18 -2.89 16 23 C 0.52 16.23 7.71 87.71 0.68 16.91 16 24 O -0.61 -23.32 17.78 -3.04 -0.05 -23.37 16 25 N -0.69 -20.69 4.79 -450.24 -2.16 -22.85 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 30 H 0.07 2.06 7.86 -2.39 -0.02 2.05 16 31 H -0.01 -0.42 7.44 -2.39 -0.02 -0.44 16 32 H 0.02 0.98 7.17 -2.39 -0.02 0.97 16 33 H 0.02 0.88 7.85 -2.39 -0.02 0.86 16 34 H 0.24 12.75 8.31 -92.71 -0.77 11.98 16 35 H 0.41 12.51 7.40 -92.71 -0.69 11.83 16 36 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 40 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.40 12.30 8.44 -92.71 -0.78 11.52 16 Total: -1.00 -66.15 342.06 1.02 -65.13 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.45 Total: 32.84 kcal Atomic # 6 Polarization: 29.23 SS G_CDS: 5.50 Total: 34.73 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -5.96 Total: -123.89 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.10 Total: -49.24 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.43 kcal Total: -66.15 1.02 -65.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699452602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.653 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds