Wall clock time and date at job start Tue Mar 31 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 N 1.46500 * 109.47442 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00522 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99731 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00242 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47066 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.21960 * 53.06548 * 10 9 7 12 12 C 1.54472 * 110.24764 * 175.00074 * 10 9 7 13 13 C 1.54623 * 101.76904 * 93.57954 * 12 10 9 14 14 C 1.51281 * 104.19561 * 24.79827 * 13 12 10 15 15 O 1.21279 * 124.94339 * 163.71071 * 14 13 12 16 16 N 1.34418 * 110.11588 * 343.75069 * 14 13 12 17 17 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 18 18 C 1.36936 * 119.99838 * 84.99783 * 17 2 1 19 19 H 1.07999 * 120.00085 * 359.97438 * 18 17 2 20 20 C 1.38815 * 119.99824 * 180.02562 * 18 17 2 21 21 N 1.31616 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47394 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47565 * 119.99838 * 22 20 18 25 25 H 1.48506 * 109.47294 * 239.99626 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 30 30 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 31 31 H 1.09000 * 109.47346 * 300.00002 * 5 4 2 32 32 H 1.09007 * 109.46964 * 60.00529 * 5 4 2 33 33 H 0.97002 * 119.99959 * 0.02562 * 6 5 4 34 34 H 1.09000 * 109.46835 * 299.99911 * 9 7 6 35 35 H 1.08994 * 109.47068 * 59.99868 * 9 7 6 36 36 H 1.09001 * 110.97291 * 211.69862 * 12 10 9 37 37 H 1.09003 * 110.96756 * 335.42555 * 12 10 9 38 38 H 1.09005 * 110.48982 * 143.47849 * 13 12 10 39 39 H 1.09001 * 110.49084 * 266.12223 * 13 12 10 40 40 H 0.96995 * 124.35174 * 179.59265 * 16 14 13 41 41 H 0.96992 * 120.00062 * 265.00053 * 17 2 1 42 42 H 0.97001 * 119.99945 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5100 7 6 5.3740 -1.3387 2.7758 8 8 6.1583 -0.7987 2.0246 9 6 5.8764 -2.0491 4.0062 10 6 7.4011 -1.9400 4.0714 11 1 7.7078 -0.8970 3.9924 12 6 7.9251 -2.5530 5.3888 13 6 8.2459 -4.0025 4.9565 14 6 8.4911 -3.8999 3.4673 15 8 9.0396 -4.7462 2.7936 16 7 8.0133 -2.7338 2.9994 17 7 2.0184 -0.6906 -1.1962 18 6 2.1491 -0.0073 -2.3758 19 1 1.8918 1.0404 -2.4243 20 6 2.6114 -0.6618 -3.5093 21 7 2.9244 -1.9388 -3.4503 22 14 2.7904 0.2703 -5.1182 23 1 2.3764 1.6828 -4.9207 24 1 4.2073 0.2266 -5.5607 25 1 1.9293 -0.3574 -6.1525 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2055 31 1 3.9995 -1.0728 0.4258 32 1 3.8532 0.4370 1.3573 33 1 3.4259 -1.7350 3.1110 34 1 5.4414 -1.5899 4.8939 35 1 5.5885 -3.0994 3.9623 36 1 8.8246 -2.0390 5.7277 37 1 7.1550 -2.5368 6.1601 38 1 9.1391 -4.3639 5.4662 39 1 7.3985 -4.6575 5.1593 40 1 8.0663 -2.4532 2.0724 41 1 2.2491 -1.6316 -1.1527 42 1 3.2478 -2.3960 -4.2423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717342131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:35 Heat of formation + Delta-G solvation = -108.697107 kcal Electronic energy + Delta-G solvation = -22099.469314 eV Core-core repulsion = 18691.662733 eV Total energy + Delta-G solvation = -3407.806581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58774 -40.35915 -38.21534 -37.56825 -35.78333 -34.15637 -32.26256 -31.95246 -30.84999 -29.47721 -26.68877 -25.79772 -23.93867 -22.21947 -21.75752 -21.43825 -20.91372 -19.29934 -18.52494 -17.91390 -17.22465 -16.96711 -16.67376 -16.33879 -16.04801 -15.59932 -15.36761 -14.93912 -14.92684 -14.43683 -14.23357 -14.07780 -13.78908 -13.54739 -13.39064 -13.25503 -12.88202 -12.84408 -12.63505 -12.25607 -12.24335 -12.14061 -12.09261 -11.78695 -11.64315 -11.60857 -10.99791 -10.95835 -10.79412 -10.15356 -10.04214 -8.99726 -7.95146 -5.21781 1.43662 1.45035 1.54206 1.57765 1.71535 2.26919 2.46759 2.55026 3.39664 3.43666 3.60614 3.78385 3.91471 3.99539 4.03522 4.17892 4.23070 4.38264 4.45476 4.54398 4.65981 4.68158 4.78076 4.86648 4.89555 4.98332 5.03061 5.10985 5.14771 5.21707 5.26265 5.39793 5.50989 5.52879 5.61589 5.83523 6.13352 6.28100 6.64430 7.21672 7.33930 7.36260 8.12727 8.33010 9.28631 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.003386 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.811114 B = 8268.373114 C = 9323.858117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.042 0.958 4 C -0.115 4.115 5 C 0.133 3.867 6 N -0.716 5.716 7 C 0.497 3.503 8 O -0.593 6.593 9 C -0.143 4.143 10 C 0.135 3.865 11 H 0.091 0.909 12 C -0.109 4.109 13 C -0.148 4.148 14 C 0.498 3.502 15 O -0.604 6.604 16 N -0.725 5.725 17 N -0.736 5.736 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.966 3.034 23 H -0.264 1.264 24 H -0.299 1.299 25 H -0.293 1.293 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.418 0.582 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.401 0.599 41 H 0.371 0.629 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 0.756 27.556 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.368 5.368 7 C 0.285 3.715 8 O -0.474 6.474 9 C -0.183 4.183 10 C 0.030 3.970 11 H 0.109 0.891 12 C -0.147 4.147 13 C -0.187 4.187 14 C 0.286 3.714 15 O -0.486 6.486 16 N -0.377 5.377 17 N -0.377 5.377 18 C -0.363 4.363 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.796 3.204 23 H -0.188 1.188 24 H -0.227 1.227 25 H -0.221 1.221 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.174 0.826 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.238 0.762 41 H 0.202 0.798 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.256 0.863 26.713 26.925 hybrid contribution 0.062 -0.083 -2.251 2.254 sum 3.318 0.780 24.462 24.698 Atomic orbital electron populations 1.22268 0.97144 1.01010 1.00910 1.20480 0.93154 0.95187 0.85750 0.94009 1.21902 0.92683 1.01888 0.98855 1.21033 0.95213 0.96096 0.86841 1.45953 1.07882 1.56503 1.26453 1.21589 0.82057 0.79692 0.88143 1.90714 1.56469 1.48284 1.51891 1.22294 0.96302 1.03110 0.96587 1.21694 0.91142 0.96724 0.87426 0.89071 1.22750 1.04366 0.92413 0.95148 1.22423 1.06227 1.00675 0.89403 1.22017 0.75938 0.80459 0.92945 1.90718 1.46228 1.44878 1.66737 1.46703 1.58527 1.19982 1.12495 1.42680 1.78376 1.10221 1.06407 1.19640 1.34159 0.94078 0.88430 0.90744 1.25492 1.03391 0.96846 1.01387 1.69815 1.53059 1.10245 1.29127 0.85174 0.76537 0.78410 0.80320 1.18844 1.22717 1.22063 0.90398 0.93708 0.94982 0.87382 0.91243 0.95339 0.93176 0.74515 0.82603 0.86964 0.88468 0.84690 0.86929 0.85649 0.76246 0.79762 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.49 71.98 0.68 -4.23 16 2 C 0.16 5.94 2.89 44.99 0.13 6.07 16 3 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 4 C -0.11 -3.11 4.87 30.59 0.15 -2.96 16 5 C 0.13 4.18 5.56 86.38 0.48 4.66 16 6 N -0.72 -15.74 5.56 -463.05 -2.57 -18.31 16 7 C 0.50 11.81 7.73 87.66 0.68 12.49 16 8 O -0.59 -20.72 15.11 -3.04 -0.05 -20.76 16 9 C -0.14 -1.57 5.31 29.85 0.16 -1.41 16 10 C 0.14 1.82 3.00 45.44 0.14 1.96 16 11 H 0.09 1.39 7.91 -2.39 -0.02 1.37 16 12 C -0.11 -0.55 6.70 31.65 0.21 -0.34 16 13 C -0.15 -1.59 6.86 30.59 0.21 -1.38 16 14 C 0.50 12.18 8.43 87.90 0.74 12.92 16 15 O -0.60 -21.79 18.03 -3.03 -0.05 -21.84 16 16 N -0.73 -16.75 5.52 -439.44 -2.43 -19.18 16 17 N -0.74 -36.51 4.57 -322.95 -1.48 -37.99 16 18 C -0.23 -12.94 9.93 84.03 0.83 -12.10 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 21 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 22 Si 0.97 47.78 29.55 68.60 2.03 49.81 16 23 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 1.22 7.75 -2.39 -0.02 1.20 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.42 5.50 8.47 -92.71 -0.79 4.72 16 34 H 0.16 0.24 8.09 -2.39 -0.02 0.22 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.13 -0.33 7.86 -2.39 -0.02 -0.35 16 38 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.40 11.71 8.37 -92.71 -0.78 10.93 16 41 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 42 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -86.31 350.88 -0.63 -86.95 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -1.25 Total: 30.95 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 4.88 Total: 11.47 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -6.19 Total: -136.57 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.10 Total: -42.60 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -86.31 -0.63 -86.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717342131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.748 kcal (2) G-P(sol) polarization free energy of solvation -86.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds