Wall clock time and date at job start Tue Mar 31 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46975 * 2 1 4 4 C 1.52993 * 109.47151 * 119.99952 * 2 1 3 5 5 C 1.50705 * 109.47318 * 295.00199 * 4 2 1 6 6 N 1.34772 * 120.00123 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99625 * 359.97438 * 5 4 2 8 8 C 1.50703 * 109.46746 * 240.00133 * 2 1 3 9 9 O 1.21283 * 119.99630 * 239.99587 * 8 2 1 10 10 N 1.34777 * 120.00290 * 59.72814 * 8 2 1 11 11 C 1.46499 * 119.99833 * 180.27010 * 10 8 2 12 12 C 1.53007 * 109.46866 * 182.07690 * 11 10 8 13 13 H 1.09000 * 109.87148 * 301.32792 * 12 11 10 14 14 C 1.54322 * 109.88197 * 180.31051 * 12 11 10 15 15 C 1.55151 * 102.94303 * 218.38984 * 14 12 11 16 16 C 1.54914 * 101.58118 * 35.50314 * 15 14 12 17 17 N 1.47023 * 109.87853 * 62.50232 * 12 11 10 18 18 C 1.36935 * 125.65116 * 298.33185 * 17 12 11 19 19 H 1.08000 * 119.99828 * 335.61579 * 18 17 12 20 20 C 1.38813 * 120.00134 * 155.61239 * 18 17 12 21 21 N 1.31616 * 119.99832 * 160.16137 * 20 18 17 22 22 Si 1.86797 * 119.99740 * 340.16740 * 20 18 17 23 23 H 1.48500 * 109.47230 * 84.36524 * 22 20 18 24 24 H 1.48500 * 109.46704 * 204.36168 * 22 20 18 25 25 H 1.48501 * 109.47355 * 324.35861 * 22 20 18 26 26 H 1.08997 * 109.47176 * 300.00157 * 1 2 3 27 27 H 1.09000 * 109.47149 * 59.99742 * 1 2 3 28 28 H 1.09001 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46908 * 55.00070 * 4 2 1 30 30 H 1.09003 * 109.47153 * 174.99838 * 4 2 1 31 31 H 0.97005 * 119.99894 * 359.97438 * 6 5 4 32 32 H 0.96998 * 120.00155 * 179.97438 * 6 5 4 33 33 H 0.97002 * 119.99637 * 0.27370 * 10 8 2 34 34 H 1.08990 * 109.47128 * 302.07802 * 11 10 8 35 35 H 1.08997 * 109.46703 * 62.08306 * 11 10 8 36 36 H 1.08999 * 110.71719 * 336.75387 * 14 12 11 37 37 H 1.08999 * 110.72105 * 100.02556 * 14 12 11 38 38 H 1.08999 * 111.00593 * 153.57372 * 15 14 12 39 39 H 1.08996 * 111.00383 * 277.42741 * 15 14 12 40 40 H 1.09002 * 110.36968 * 81.82595 * 16 15 14 41 41 H 1.09000 * 110.36743 * 204.04677 * 16 15 14 42 42 H 0.96997 * 119.99920 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 7 1.9844 -0.3919 3.7001 7 8 1.0116 1.0874 2.3632 8 6 2.0322 -0.7104 -1.2305 9 8 2.7295 -1.6965 -1.1192 10 7 1.7021 -0.2532 -2.4546 11 6 2.1855 -0.9473 -3.6507 12 6 1.7141 -0.1997 -4.8997 13 1 0.6257 -0.1425 -4.9086 14 6 2.2118 -0.9275 -6.1662 15 6 2.5823 0.2419 -7.1162 16 6 3.1360 1.2896 -6.1184 17 7 2.2892 1.1533 -4.9193 18 6 2.0735 2.1259 -3.9798 19 1 1.1777 2.1052 -3.3771 20 6 3.0064 3.1384 -3.8022 21 7 2.6547 4.2611 -3.2123 22 14 4.7608 2.9073 -4.4005 23 1 4.8432 3.2602 -5.8406 24 1 5.6690 3.7876 -3.6224 25 1 5.1649 1.4906 -4.2140 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2055 31 1 2.4877 -1.2162 3.7908 32 1 1.7281 0.1092 4.4901 33 1 1.1445 0.5356 -2.5436 34 1 3.2748 -0.9801 -3.6364 35 1 1.7915 -1.9634 -3.6652 36 1 3.0887 -1.5351 -5.9423 37 1 1.4183 -1.5379 -6.5972 38 1 3.3487 -0.0617 -7.8292 39 1 1.6998 0.6212 -7.6314 40 1 4.1756 1.0698 -5.8755 41 1 3.0483 2.2932 -6.5346 42 1 3.3064 4.9687 -3.0885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753107903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:08 Heat of formation + Delta-G solvation = -90.931042 kcal Electronic energy + Delta-G solvation = -23379.478611 eV Core-core repulsion = 19972.442424 eV Total energy + Delta-G solvation = -3407.036186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26236 -40.27922 -39.40172 -35.46213 -35.14740 -34.64264 -34.61384 -31.79451 -30.90833 -28.77870 -26.74180 -25.89149 -24.37157 -22.54973 -21.53149 -21.29137 -20.41421 -19.02475 -18.43438 -18.05578 -17.34424 -17.09783 -16.93470 -16.72055 -16.46292 -15.84003 -15.25165 -15.07233 -14.91751 -14.65986 -14.22593 -14.15154 -13.93910 -13.60769 -13.39889 -13.02454 -12.95154 -12.78532 -12.70611 -12.32629 -12.20459 -12.09905 -11.97003 -11.77554 -11.59972 -11.30033 -11.00733 -10.78659 -10.71524 -10.54383 -9.87064 -8.98800 -8.16668 -5.45033 1.25962 1.36111 1.42417 1.64280 1.70273 2.25011 2.40510 2.78689 3.11813 3.30309 3.59705 3.86441 3.90957 3.99889 4.02532 4.17039 4.22912 4.31786 4.43832 4.48194 4.65392 4.68410 4.71449 4.75656 4.83821 4.94814 5.02838 5.03987 5.08481 5.16349 5.29040 5.30809 5.49626 5.62942 5.73677 5.94451 6.12073 6.46296 6.68185 6.78109 7.30476 7.38102 7.56104 8.15782 9.02263 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.005339 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.509796 B = 5243.358656 C = 6094.863776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.115 4.115 5 C 0.517 3.483 6 N -0.835 5.835 7 O -0.582 6.582 8 C 0.514 3.486 9 O -0.587 6.587 10 N -0.706 5.706 11 C 0.117 3.883 12 C 0.140 3.860 13 H 0.059 0.941 14 C -0.113 4.113 15 C -0.117 4.117 16 C 0.099 3.901 17 N -0.619 5.619 18 C -0.212 4.212 19 H 0.074 0.926 20 C -0.027 4.027 21 N -0.949 5.949 22 Si 0.933 3.067 23 H -0.273 1.273 24 H -0.317 1.317 25 H -0.281 1.281 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.418 0.582 32 H 0.408 0.592 33 H 0.408 0.592 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.037 0.963 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -14.820 4.257 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.155 4.155 5 C 0.303 3.697 6 N -0.400 5.400 7 O -0.463 6.463 8 C 0.301 3.699 9 O -0.469 6.469 10 N -0.357 5.357 11 C -0.008 4.008 12 C 0.034 3.966 13 H 0.077 0.923 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.025 4.025 17 N -0.345 5.345 18 C -0.341 4.341 19 H 0.091 0.909 20 C -0.222 4.222 21 N -0.596 5.596 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.246 1.246 25 H -0.207 1.207 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.121 0.879 31 H 0.249 0.751 32 H 0.240 0.760 33 H 0.246 0.754 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.365 -14.684 4.148 15.441 hybrid contribution 1.225 0.960 0.405 1.608 sum -1.140 -13.724 4.552 14.504 Atomic orbital electron populations 1.21787 0.91429 1.02750 1.03475 1.20947 0.99152 0.99937 0.91633 0.90109 1.21387 1.03896 1.00357 0.89899 1.20735 0.77948 0.84721 0.86327 1.43655 1.59267 1.29898 1.07143 1.90737 1.41845 1.26329 1.87350 1.20828 0.79524 0.83981 0.85549 1.90585 1.40329 1.28382 1.87639 1.46219 1.52361 1.31692 1.05395 1.21894 0.97911 0.95776 0.85268 1.21581 0.97380 0.84039 0.93632 0.92312 1.22558 1.02354 0.97034 0.93191 1.22681 1.01722 0.94648 0.96484 1.22061 0.93400 0.98835 0.88228 1.45057 1.56122 1.10111 1.23193 1.18422 1.01672 1.01116 1.12883 0.90894 1.25581 1.00446 0.96500 0.99685 1.69908 1.34966 1.05443 1.49299 0.86119 0.83580 0.76303 0.77540 1.19903 1.24628 1.20694 0.90463 0.92625 0.91083 0.86194 0.87941 0.75052 0.76036 0.75352 0.94711 0.90422 0.90627 0.87518 0.88807 0.90147 0.97083 0.94471 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 8.83 71.98 0.64 -3.34 16 2 C -0.09 -3.10 2.37 -11.54 -0.03 -3.13 16 3 H 0.08 3.12 7.95 -2.38 -0.02 3.10 16 4 C -0.12 -2.93 4.52 29.85 0.13 -2.79 16 5 C 0.52 13.03 7.82 87.66 0.69 13.72 16 6 N -0.84 -12.52 8.87 -173.53 -1.54 -14.06 16 7 O -0.58 -20.13 14.80 -3.03 -0.04 -20.17 16 8 C 0.51 19.10 7.16 87.66 0.63 19.72 16 9 O -0.59 -23.65 15.92 -3.04 -0.05 -23.70 16 10 N -0.71 -26.78 4.80 -463.06 -2.22 -29.01 16 11 C 0.12 4.16 5.16 86.38 0.45 4.61 16 12 C 0.14 4.78 3.34 45.34 0.15 4.93 16 13 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 14 C -0.11 -2.90 6.48 31.78 0.21 -2.70 16 15 C -0.12 -3.26 7.09 31.99 0.23 -3.04 16 16 C 0.10 4.00 4.73 86.86 0.41 4.41 16 17 N -0.62 -27.29 2.86 -668.23 -1.91 -29.21 16 18 C -0.21 -11.19 8.86 84.03 0.74 -10.45 16 19 H 0.07 4.03 6.54 -2.91 -0.02 4.01 16 20 C -0.03 -1.54 5.45 84.86 0.46 -1.08 16 21 N -0.95 -58.76 13.97 21.65 0.30 -58.46 16 22 Si 0.93 47.81 24.32 68.60 1.67 49.48 16 23 H -0.27 -13.20 6.67 99.48 0.66 -12.53 16 24 H -0.32 -16.78 7.11 99.48 0.71 -16.07 16 25 H -0.28 -14.36 6.73 99.48 0.67 -13.69 16 26 H 0.08 2.36 5.95 -2.39 -0.01 2.34 16 27 H 0.05 1.66 7.55 -2.39 -0.02 1.64 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.10 2.59 7.96 -2.39 -0.02 2.57 16 31 H 0.42 3.49 8.83 -92.70 -0.82 2.67 16 32 H 0.41 5.23 8.93 -92.71 -0.83 4.40 16 33 H 0.41 16.26 5.20 -92.71 -0.48 15.78 16 34 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.08 1.86 7.85 -2.39 -0.02 1.85 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.01 0.49 5.42 -2.39 -0.01 0.48 16 41 H 0.04 1.63 7.16 -2.39 -0.02 1.61 16 42 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.99 330.66 -0.25 -75.23 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -1.15 Total: 29.02 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 4.70 Total: 20.87 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -5.37 Total: -130.73 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.09 Total: -43.87 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.67 Total: 49.48 kcal Total: -74.99 -0.25 -75.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753107903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.697 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds