Wall clock time and date at job start Tue Mar 31 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47359 * 2 1 4 4 C 1.52994 * 109.47561 * 239.99479 * 2 1 3 5 5 C 1.50706 * 109.47107 * 65.00184 * 4 2 1 6 6 N 1.34771 * 119.99968 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99593 * 359.97438 * 5 4 2 8 8 C 1.50706 * 109.46912 * 119.99206 * 2 1 3 9 9 O 1.21282 * 119.99666 * 119.72445 * 8 2 1 10 10 N 1.34771 * 120.00357 * 300.00599 * 8 2 1 11 11 C 1.46496 * 120.00133 * 180.02562 * 10 8 2 12 12 C 1.52998 * 109.47520 * 181.90878 * 11 10 8 13 13 H 1.09007 * 109.86945 * 300.01971 * 12 11 10 14 14 C 1.54324 * 109.88477 * 179.00141 * 12 11 10 15 15 C 1.55159 * 102.94070 * 218.38451 * 14 12 11 16 16 C 1.54907 * 101.58039 * 35.50524 * 15 14 12 17 17 N 1.47020 * 109.88322 * 61.18952 * 12 11 10 18 18 C 1.36931 * 125.65115 * 298.34324 * 17 12 11 19 19 H 1.08006 * 120.00271 * 133.88972 * 18 17 12 20 20 C 1.38812 * 120.00296 * 313.88752 * 18 17 12 21 21 N 1.31616 * 120.00611 * 169.81081 * 20 18 17 22 22 Si 1.86804 * 119.99585 * 349.81082 * 20 18 17 23 23 H 1.48499 * 109.47038 * 90.93981 * 22 20 18 24 24 H 1.48500 * 109.47090 * 210.93894 * 22 20 18 25 25 H 1.48502 * 109.47089 * 330.93613 * 22 20 18 26 26 H 1.08997 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46997 * 300.00380 * 1 2 3 28 28 H 1.08999 * 109.46839 * 60.00324 * 1 2 3 29 29 H 1.08999 * 109.47535 * 185.00080 * 4 2 1 30 30 H 1.09002 * 109.47241 * 305.00422 * 4 2 1 31 31 H 0.96997 * 120.00610 * 359.97438 * 6 5 4 32 32 H 0.97008 * 119.99404 * 179.97438 * 6 5 4 33 33 H 0.96999 * 120.00169 * 359.97438 * 10 8 2 34 34 H 1.09008 * 109.46891 * 301.90383 * 11 10 8 35 35 H 1.09003 * 109.47342 * 61.90068 * 11 10 8 36 36 H 1.08990 * 110.72013 * 336.75260 * 14 12 11 37 37 H 1.09003 * 110.71496 * 100.02604 * 14 12 11 38 38 H 1.09001 * 110.99921 * 153.57418 * 15 14 12 39 39 H 1.08992 * 111.00826 * 277.42981 * 15 14 12 40 40 H 1.09000 * 110.37172 * 81.82637 * 16 15 14 41 41 H 1.09005 * 110.36766 * 204.03866 * 16 15 14 42 42 H 0.97001 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4766 6 7 1.9847 -0.3921 -3.7000 7 8 1.0111 1.0868 -2.3633 8 6 2.0323 -0.7103 1.2306 9 8 2.7254 -1.6993 1.1194 10 7 1.7067 -0.2498 2.4546 11 6 2.1954 -0.9399 3.6508 12 6 1.6464 -0.2471 4.8996 13 1 1.9771 0.7914 4.9227 14 6 2.1354 -0.9820 6.1655 15 6 0.8984 -0.9246 7.1003 16 6 -0.2644 -1.0630 6.0862 17 7 0.1774 -0.3074 4.8999 18 6 -0.6443 0.2468 3.9551 19 1 -1.4632 -0.3276 3.5476 20 6 -0.4249 1.5469 3.5209 21 7 -1.0796 2.0119 2.4781 22 14 0.7996 2.6366 4.4168 23 1 2.1406 2.4885 3.7961 24 1 0.3638 4.0530 4.3217 25 1 0.8679 2.2345 5.8447 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2054 30 1 1.6055 -1.7199 -1.2950 31 1 2.4886 -1.2160 -3.7907 32 1 1.7278 0.1087 -4.4901 33 1 1.1492 0.5391 2.5436 34 1 1.8607 -1.9772 3.6341 35 1 3.2849 -0.9100 3.6680 36 1 2.3971 -2.0146 5.9350 37 1 2.9811 -0.4591 6.6123 38 1 0.9028 -1.7557 7.8054 39 1 0.8484 0.0299 7.6241 40 1 -0.4227 -2.1109 5.8312 41 1 -1.1777 -0.6306 6.4949 42 1 -0.9260 2.9203 2.1745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753107905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:12 Heat of formation + Delta-G solvation = -88.078361 kcal Electronic energy + Delta-G solvation = -23877.236506 eV Core-core repulsion = 20470.324021 eV Total energy + Delta-G solvation = -3406.912485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27630 -40.30569 -39.38347 -35.51896 -35.11252 -34.62796 -34.59563 -31.80244 -30.87167 -28.68856 -26.84971 -25.76815 -24.18282 -22.23571 -21.71340 -21.44611 -20.47361 -18.86260 -18.49046 -18.09665 -17.60733 -17.08961 -16.77697 -16.56424 -16.28600 -15.90729 -15.31661 -15.09662 -14.94934 -14.54565 -14.33257 -13.94414 -13.73891 -13.64766 -13.59534 -12.97606 -12.89165 -12.88166 -12.65680 -12.21070 -12.11708 -12.09932 -11.90882 -11.86561 -11.78734 -11.22735 -11.00435 -10.74218 -10.65974 -10.53473 -9.85833 -8.61700 -8.18916 -5.72160 1.23642 1.35767 1.44811 1.64577 1.67432 2.26735 2.33221 2.79704 3.00320 3.34452 3.63850 3.87129 3.93671 3.98206 4.05664 4.12959 4.24097 4.35872 4.41139 4.46465 4.62854 4.70000 4.76525 4.80057 4.86415 5.00916 5.08732 5.11189 5.14491 5.17697 5.27762 5.48524 5.63036 5.65367 5.93988 5.96785 6.19699 6.47384 6.72584 6.83012 7.30410 7.39423 7.45532 8.21495 8.94003 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.005729 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.218613 B = 4885.873690 C = 5574.834279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.086 0.914 4 C -0.114 4.114 5 C 0.517 3.483 6 N -0.833 5.833 7 O -0.582 6.582 8 C 0.509 3.491 9 O -0.585 6.585 10 N -0.716 5.716 11 C 0.115 3.885 12 C 0.121 3.879 13 H 0.023 0.977 14 C -0.116 4.116 15 C -0.122 4.122 16 C 0.119 3.881 17 N -0.621 5.621 18 C -0.229 4.229 19 H 0.043 0.957 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.916 3.084 23 H -0.276 1.276 24 H -0.304 1.304 25 H -0.256 1.256 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.418 0.582 32 H 0.408 0.592 33 H 0.414 0.586 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.041 0.959 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.109 -6.635 -2.615 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.154 4.154 5 C 0.303 3.697 6 N -0.398 5.398 7 O -0.462 6.462 8 C 0.296 3.704 9 O -0.468 6.468 10 N -0.370 5.370 11 C -0.010 4.010 12 C 0.015 3.985 13 H 0.040 0.960 14 C -0.154 4.154 15 C -0.160 4.160 16 C -0.005 4.005 17 N -0.348 5.348 18 C -0.359 4.359 19 H 0.060 0.940 20 C -0.203 4.203 21 N -0.560 5.560 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.233 1.233 25 H -0.180 1.180 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.250 0.750 32 H 0.240 0.760 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.083 -6.516 -2.561 11.468 hybrid contribution -0.037 1.118 -0.273 1.152 sum 9.046 -5.398 -2.834 10.909 Atomic orbital electron populations 1.21963 0.92382 1.01507 1.05212 1.20904 0.98333 0.99949 0.91856 0.89624 1.21392 1.04216 0.99986 0.89813 1.20704 0.77938 0.84756 0.86338 1.43616 1.59279 1.29938 1.06976 1.90745 1.41467 1.26597 1.87354 1.20896 0.79424 0.84362 0.85690 1.90548 1.40900 1.27569 1.87747 1.46719 1.52025 1.32750 1.05522 1.21931 0.97648 0.96542 0.84893 1.21735 0.85649 0.96548 0.94567 0.95983 1.22558 0.98475 1.01299 0.93070 1.22720 0.93870 1.02598 0.96858 1.21939 0.96914 0.94863 0.86773 1.44829 1.00246 1.64567 1.25178 1.18230 1.09773 0.93801 1.14119 0.93974 1.26027 0.99466 0.97084 0.97687 1.69772 1.43959 1.17400 1.24889 0.86292 0.79526 0.78114 0.81610 1.20249 1.23251 1.17996 0.93782 0.90033 0.91108 0.86711 0.87177 0.75012 0.76001 0.74344 0.92523 0.91498 0.89156 0.89067 0.87864 0.91935 0.94951 0.94013 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.55 8.83 71.98 0.64 -5.92 16 2 C -0.09 -3.43 2.37 -11.54 -0.03 -3.46 16 3 H 0.09 3.45 7.96 -2.39 -0.02 3.43 16 4 C -0.11 -3.30 4.52 29.85 0.13 -3.16 16 5 C 0.52 14.47 7.82 87.66 0.69 15.16 16 6 N -0.83 -13.94 8.87 -173.53 -1.54 -15.48 16 7 O -0.58 -21.98 14.80 -3.05 -0.05 -22.02 16 8 C 0.51 21.70 7.15 87.66 0.63 22.33 16 9 O -0.58 -25.43 15.92 -3.03 -0.05 -25.48 16 10 N -0.72 -32.22 4.81 -463.06 -2.23 -34.45 16 11 C 0.12 4.63 5.18 86.38 0.45 5.08 16 12 C 0.12 4.75 2.48 45.34 0.11 4.86 16 13 H 0.02 0.96 3.83 -2.38 -0.01 0.95 16 14 C -0.12 -3.30 6.48 31.78 0.21 -3.09 16 15 C -0.12 -3.42 7.09 31.99 0.23 -3.19 16 16 C 0.12 4.37 7.23 86.85 0.63 5.00 16 17 N -0.62 -27.83 2.52 -668.25 -1.68 -29.52 16 18 C -0.23 -12.11 8.98 84.03 0.75 -11.35 16 19 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 20 C 0.00 -0.22 3.56 84.86 0.30 0.09 16 21 N -0.92 -51.63 12.12 21.65 0.26 -51.37 16 22 Si 0.92 43.50 23.89 68.60 1.64 45.14 16 23 H -0.28 -12.74 7.03 99.48 0.70 -12.04 16 24 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 25 H -0.26 -11.67 7.01 99.48 0.70 -10.97 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 4.07 5.57 -2.39 -0.01 4.06 16 28 H 0.07 3.03 5.95 -2.39 -0.01 3.02 16 29 H 0.11 2.92 7.96 -2.39 -0.02 2.90 16 30 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.42 4.10 8.83 -92.71 -0.82 3.28 16 32 H 0.41 5.83 8.93 -92.70 -0.83 5.00 16 33 H 0.41 20.09 3.18 -92.71 -0.29 19.79 16 34 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.09 2.26 7.85 -2.39 -0.02 2.24 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -68.91 325.47 0.19 -68.72 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -0.90 Total: 42.11 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 4.73 Total: 22.34 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -5.19 Total: -130.82 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.09 Total: -47.50 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.64 Total: 45.14 kcal Total: -68.91 0.19 -68.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753107905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.357 kcal (2) G-P(sol) polarization free energy of solvation -68.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds