Wall clock time and date at job start Tue Mar 31 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.52999 * 109.47054 * 185.00114 * 3 2 1 6 6 N 1.46496 * 109.46967 * 185.00364 * 5 3 2 7 7 C 1.34781 * 120.00112 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00149 * 179.97438 * 7 6 5 10 10 H 1.09006 * 109.66815 * 60.49415 * 9 7 6 11 11 C 1.53340 * 109.67451 * 181.02990 * 9 7 6 12 12 C 1.52931 * 108.66248 * 187.27726 * 11 9 7 13 13 N 1.45755 * 110.48335 * 309.22027 * 12 11 9 14 14 C 1.33354 * 124.10228 * 19.10763 * 13 12 11 15 15 O 1.21284 * 118.24506 * 177.73109 * 14 13 12 16 16 C 1.50178 * 123.50929 * 357.76223 * 14 13 12 17 17 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 18 18 C 1.36933 * 120.00205 * 274.99830 * 17 3 2 19 19 H 1.07999 * 120.00144 * 0.02562 * 18 17 3 20 20 C 1.38813 * 120.00301 * 180.02562 * 18 17 3 21 21 N 1.31616 * 119.99824 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46891 * 90.00108 * 22 20 18 24 24 H 1.48499 * 109.47298 * 209.99905 * 22 20 18 25 25 H 1.48496 * 109.47073 * 329.99931 * 22 20 18 26 26 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 30 30 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 31 31 H 1.08999 * 109.46840 * 305.00235 * 5 3 2 32 32 H 1.09001 * 109.47277 * 65.00156 * 5 3 2 33 33 H 0.97004 * 120.00126 * 359.97438 * 6 5 3 34 34 H 1.08994 * 109.60318 * 307.02231 * 11 9 7 35 35 H 1.08998 * 109.59972 * 67.51255 * 11 9 7 36 36 H 1.09002 * 109.29666 * 188.91672 * 12 11 9 37 37 H 1.08998 * 109.15255 * 69.43461 * 12 11 9 38 38 H 0.96998 * 117.94969 * 199.09101 * 13 12 11 39 39 H 1.08999 * 109.39530 * 257.44668 * 16 14 13 40 40 H 1.08998 * 109.40098 * 137.71116 * 16 14 13 41 41 H 0.96999 * 119.99886 * 95.00381 * 17 3 2 42 42 H 0.97002 * 120.00343 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0868 8 8 6.1634 2.1485 -0.2583 9 6 5.8981 4.4750 0.0359 10 1 5.6226 4.8820 1.0089 11 6 7.4239 4.4854 -0.1156 12 6 7.9367 5.8928 0.1923 13 7 7.1957 6.8852 -0.5761 14 6 6.0038 6.6632 -1.1315 15 8 5.4624 7.5791 -1.7138 16 6 5.2957 5.3401 -1.0738 17 7 1.6524 2.0974 1.2518 18 6 0.4156 2.6734 1.3689 19 1 -0.2743 2.6446 0.5385 20 6 0.0486 3.2944 2.5549 21 7 0.8895 3.3300 3.5667 22 14 -1.6383 4.0807 2.7143 23 1 -2.6051 3.0782 3.2298 24 1 -1.5635 5.2262 3.6564 25 1 -2.0875 4.5629 1.3836 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9953 0.8311 0.6659 32 1 3.8499 1.0378 -1.0961 33 1 3.4409 3.5484 0.1309 34 1 7.8656 3.7744 0.5825 35 1 7.6918 4.2135 -1.1366 36 1 8.9944 5.9550 -0.0641 37 1 7.8117 6.0942 1.2562 38 1 7.5943 7.7620 -0.6906 39 1 5.4045 4.8293 -2.0305 40 1 4.2374 5.5043 -0.8709 41 1 2.2719 2.1231 1.9978 42 1 0.6332 3.7643 4.3954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753469568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:28 Heat of formation + Delta-G solvation = -105.731076 kcal Electronic energy + Delta-G solvation = -22848.127099 eV Core-core repulsion = 19440.449134 eV Total energy + Delta-G solvation = -3407.677964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66909 -40.39785 -38.34282 -37.26434 -35.25011 -34.35422 -33.88606 -31.48828 -30.67235 -29.46177 -26.50993 -25.42938 -24.38950 -23.38439 -21.63693 -21.06611 -20.18562 -19.24379 -18.53269 -17.84379 -17.40846 -16.87332 -16.73606 -16.39904 -16.05744 -15.72769 -15.24722 -15.14902 -14.77614 -14.67190 -14.49598 -14.40952 -14.06803 -13.62580 -12.97297 -12.86312 -12.79792 -12.76838 -12.67460 -12.36217 -12.12718 -12.06717 -12.05037 -11.85429 -11.59539 -11.38095 -11.31239 -10.90494 -10.57865 -10.07838 -9.97384 -8.95621 -7.87104 -5.13166 1.50211 1.52350 1.53507 1.58356 1.63886 2.27380 2.31354 2.60674 3.44043 3.48402 3.61589 3.71063 3.77790 3.92569 3.99006 4.22067 4.24733 4.41272 4.43102 4.50467 4.58814 4.64285 4.71169 4.77026 4.87905 4.90542 5.03317 5.12633 5.15621 5.21366 5.23386 5.50580 5.60271 5.63410 5.73429 5.82707 6.27697 6.33974 6.61394 7.16192 7.25459 7.42337 8.14284 8.38932 9.35790 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.004625 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.784170 B = 6052.285678 C = 7148.012018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.163 3.837 4 H 0.058 0.942 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.518 3.482 8 O -0.578 6.578 9 C -0.105 4.105 10 H 0.113 0.887 11 C -0.113 4.113 12 C 0.111 3.889 13 N -0.709 5.709 14 C 0.524 3.476 15 O -0.605 6.605 16 C -0.121 4.121 17 N -0.726 5.726 18 C -0.214 4.214 19 H 0.079 0.921 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.955 3.045 23 H -0.294 1.294 24 H -0.303 1.303 25 H -0.271 1.271 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.410 0.590 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.407 0.593 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.373 0.627 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 1.297 -8.185 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.076 0.924 5 C -0.003 4.003 6 N -0.361 5.361 7 C 0.304 3.696 8 O -0.458 6.458 9 C -0.126 4.126 10 H 0.131 0.869 11 C -0.151 4.151 12 C -0.012 4.012 13 N -0.359 5.359 14 C 0.311 3.689 15 O -0.487 6.487 16 C -0.161 4.161 17 N -0.367 5.367 18 C -0.346 4.346 19 H 0.096 0.904 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.786 3.214 23 H -0.222 1.222 24 H -0.230 1.230 25 H -0.196 1.196 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.246 0.754 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.244 0.756 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.205 0.795 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.526 0.934 -8.624 16.069 hybrid contribution -1.154 0.927 0.898 1.731 sum 12.373 1.861 -7.726 14.705 Atomic orbital electron populations 1.21703 0.96120 1.00536 1.01743 1.21990 0.96524 0.97461 1.01042 1.20727 0.91203 0.93181 0.89453 0.92446 1.21554 0.94152 0.83057 1.01487 1.46056 1.07543 1.10542 1.71994 1.20766 0.81974 0.91329 0.75487 1.90656 1.56532 1.47438 1.51208 1.21433 0.98379 0.91366 1.01413 0.86909 1.21712 0.91704 0.97272 1.04404 1.21659 0.97102 0.86068 0.96398 1.45474 1.19111 1.17866 1.53485 1.20148 0.81468 0.89928 0.77321 1.90757 1.66144 1.45479 1.46347 1.21578 1.01393 0.92215 1.00960 1.42553 1.15701 1.66054 1.12388 1.19479 0.92538 1.25193 0.97408 0.90351 1.25308 1.00715 1.03527 0.96733 1.69784 1.36643 1.51059 1.04322 0.85406 0.81213 0.77468 0.77300 1.22226 1.23024 1.19588 0.93327 0.93259 0.92936 0.90676 0.93572 0.92972 0.90181 0.75413 0.88508 0.90587 0.86885 0.89763 0.75648 0.87190 0.87773 0.79473 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.18 71.98 0.66 -4.07 16 2 C -0.13 -4.07 5.61 30.60 0.17 -3.89 16 3 C 0.16 5.55 2.59 44.99 0.12 5.66 16 4 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 3.74 5.23 86.38 0.45 4.19 16 6 N -0.71 -21.02 5.30 -463.07 -2.45 -23.47 16 7 C 0.52 14.50 7.14 87.66 0.63 15.12 16 8 O -0.58 -19.29 15.89 -3.03 -0.05 -19.34 16 9 C -0.10 -2.20 2.60 -11.41 -0.03 -2.23 16 10 H 0.11 2.31 8.13 -2.38 -0.02 2.29 16 11 C -0.11 -1.83 4.71 30.69 0.14 -1.68 16 12 C 0.11 1.22 7.17 86.50 0.62 1.84 16 13 N -0.71 -11.55 5.45 -467.29 -2.55 -14.10 16 14 C 0.52 12.59 7.71 87.71 0.68 13.27 16 15 O -0.60 -20.08 17.78 -3.04 -0.05 -20.14 16 16 C -0.12 -2.64 5.18 29.71 0.15 -2.49 16 17 N -0.73 -31.73 4.51 -322.94 -1.46 -33.18 16 18 C -0.21 -10.55 7.75 84.03 0.65 -9.89 16 19 H 0.08 3.74 7.32 -2.91 -0.02 3.72 16 20 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 21 N -0.97 -55.62 13.06 21.65 0.28 -55.34 16 22 Si 0.95 44.17 29.55 68.60 2.03 46.20 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H 0.05 1.96 5.99 -2.39 -0.01 1.94 16 27 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.41 12.56 7.83 -92.71 -0.73 11.83 16 34 H 0.10 1.61 7.89 -2.39 -0.02 1.59 16 35 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.41 5.62 8.80 -92.71 -0.82 4.81 16 39 H 0.11 2.27 8.09 -2.39 -0.02 2.25 16 40 H 0.10 2.42 7.92 -2.39 -0.02 2.40 16 41 H 0.37 18.13 7.80 -92.71 -0.72 17.40 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -67.53 342.66 -0.76 -68.28 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -1.22 Total: 38.57 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 4.71 Total: 12.52 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -6.17 Total: -126.09 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.10 Total: -39.48 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.53 -0.76 -68.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753469568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.450 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds