Wall clock time and date at job start Tue Mar 31 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47555 * 2 1 4 4 C 1.52997 * 109.46959 * 120.00068 * 2 1 3 5 5 N 1.46502 * 109.47183 * 174.99714 * 4 2 1 6 6 C 1.46507 * 119.99878 * 270.00334 * 5 4 2 7 7 C 1.36936 * 120.00102 * 89.99777 * 5 4 2 8 8 H 1.07994 * 119.99836 * 336.04359 * 7 5 4 9 9 C 1.38811 * 119.99826 * 156.03892 * 7 5 4 10 10 N 1.31615 * 120.00341 * 331.32061 * 9 7 5 11 11 Si 1.86795 * 119.99699 * 151.32156 * 9 7 5 12 12 H 1.48504 * 109.47318 * 269.99863 * 11 9 7 13 13 H 1.48501 * 109.47404 * 29.99785 * 11 9 7 14 14 H 1.48500 * 109.47203 * 149.99914 * 11 9 7 15 15 N 1.46503 * 109.46865 * 239.99862 * 2 1 3 16 16 C 1.34772 * 120.00050 * 85.00146 * 15 2 1 17 17 O 1.21279 * 120.00036 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00253 * 180.02562 * 16 15 2 19 19 H 1.09000 * 110.43614 * 61.08277 * 18 16 15 20 20 C 1.54621 * 110.48899 * 183.77374 * 18 16 15 21 21 C 1.54482 * 101.76782 * 143.47638 * 20 18 16 22 22 N 1.46766 * 105.46889 * 334.58351 * 21 20 18 23 23 C 1.46505 * 124.34591 * 196.99771 * 22 21 20 24 24 C 1.34417 * 111.30307 * 17.01549 * 22 21 20 25 25 O 1.21274 * 124.94227 * 179.55527 * 24 22 21 26 26 H 1.08999 * 109.46781 * 59.99647 * 1 2 3 27 27 H 1.08997 * 109.47555 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46898 * 299.99962 * 1 2 3 29 29 H 1.09000 * 109.47362 * 54.99930 * 4 2 1 30 30 H 1.08996 * 109.47232 * 294.99835 * 4 2 1 31 31 H 1.09005 * 109.46408 * 271.49604 * 6 5 4 32 32 H 1.09001 * 109.47175 * 31.49177 * 6 5 4 33 33 H 1.08996 * 109.46961 * 151.50036 * 6 5 4 34 34 H 0.97003 * 119.99839 * 354.06109 * 10 9 7 35 35 H 0.97004 * 120.00083 * 265.00111 * 15 2 1 36 36 H 1.08999 * 110.97023 * 261.59401 * 20 18 16 37 37 H 1.09008 * 110.97248 * 25.35417 * 20 18 16 38 38 H 1.09001 * 110.24538 * 215.58645 * 21 20 18 39 39 H 1.08993 * 110.32368 * 93.62061 * 21 20 18 40 40 H 1.09001 * 109.46669 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47014 * 299.99709 * 23 22 21 42 42 H 1.08995 * 109.47249 * 59.99736 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1906 6 6 4.1258 -1.9921 0.5611 7 6 4.2799 0.1647 1.7240 8 1 3.8845 1.1638 1.8317 9 6 5.5788 -0.1149 2.1262 10 7 5.8951 -1.3254 2.5346 11 14 6.8776 1.2271 2.0878 12 1 7.5517 1.2259 0.7645 13 1 6.2337 2.5459 2.3140 14 1 7.8801 0.9763 3.1542 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0184 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6488 -0.7289 -3.5878 19 1 1.9761 -1.5429 -3.8581 20 6 2.8001 0.2649 -4.7626 21 6 4.0669 -0.2700 -5.4665 22 7 4.8233 -0.9776 -4.4267 23 6 6.2391 -1.3380 -4.5352 24 6 4.0499 -1.2529 -3.3623 25 8 4.4212 -1.8370 -2.3664 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1369 31 1 4.2578 -2.7789 1.3039 32 1 3.4880 -2.3562 -0.2443 33 1 5.0970 -1.7085 0.1557 34 1 5.2044 -1.9987 2.6368 35 1 2.2490 -1.6319 -1.1526 36 1 1.9365 0.2189 -5.4261 37 1 2.9559 1.2800 -4.3974 38 1 4.6552 0.5571 -5.8639 39 1 3.7936 -0.9568 -6.2675 40 1 6.5528 -1.8552 -3.6284 41 1 6.3825 -1.9929 -5.3946 42 1 6.8352 -0.4345 -4.6634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754321673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:14 Heat of formation + Delta-G solvation = -41.443792 kcal Electronic energy + Delta-G solvation = -24083.979793 eV Core-core repulsion = 20679.089535 eV Total energy + Delta-G solvation = -3404.890258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81457 -38.83122 -36.68398 -36.14366 -34.18638 -32.89211 -31.19416 -30.11577 -27.88269 -26.76793 -26.25418 -25.22035 -22.93912 -21.48358 -20.54710 -20.10993 -19.32951 -17.33994 -17.20378 -16.82798 -16.20757 -15.53123 -15.16041 -14.57859 -14.12326 -13.94606 -13.73064 -13.47234 -13.46019 -13.24194 -13.06332 -12.84011 -12.50917 -12.18541 -12.14959 -11.99908 -11.86477 -11.51846 -11.17860 -10.90238 -10.79334 -10.55518 -10.50581 -10.18573 -9.95515 -9.79482 -9.48659 -9.31484 -8.75893 -8.57489 -8.16786 -6.77559 -5.92366 -3.06387 2.46985 2.86288 3.15859 3.58296 3.59572 3.61446 3.77053 4.20694 4.36689 4.70597 4.77531 4.85896 5.12327 5.17268 5.24321 5.29265 5.36952 5.44839 5.57670 5.61787 5.67751 5.74087 5.80041 5.94125 5.99272 6.08827 6.19145 6.42810 6.43542 6.54328 6.74898 6.78729 7.03281 7.07730 7.15528 7.43598 7.98614 8.12790 8.21448 8.62083 8.71210 9.25871 9.99695 10.38442 11.33737 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.007146 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.163804 B = 3917.199740 C = 5069.707591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.116 3.884 3 H 0.084 0.916 4 C 0.144 3.856 5 N -0.599 5.599 6 C 0.149 3.851 7 C -0.352 4.352 8 H 0.054 0.946 9 C -0.019 4.019 10 N -0.913 5.913 11 Si 1.060 2.940 12 H -0.296 1.296 13 H -0.293 1.293 14 H -0.291 1.291 15 N -0.689 5.689 16 C 0.529 3.471 17 O -0.547 6.547 18 C -0.150 4.150 19 H 0.129 0.871 20 C -0.115 4.115 21 C 0.103 3.897 22 N -0.625 5.625 23 C 0.095 3.905 24 C 0.521 3.479 25 O -0.493 6.493 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.001 0.999 32 H 0.019 0.981 33 H 0.052 0.948 34 H 0.269 0.731 35 H 0.402 0.598 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -1.170 -17.322 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.321 5.321 6 C 0.004 3.996 7 C -0.481 4.481 8 H 0.072 0.928 9 C -0.222 4.222 10 N -0.553 5.553 11 Si 0.890 3.110 12 H -0.223 1.223 13 H -0.219 1.219 14 H -0.218 1.218 15 N -0.340 5.340 16 C 0.313 3.687 17 O -0.426 6.426 18 C -0.175 4.175 19 H 0.146 0.854 20 C -0.153 4.153 21 C -0.020 4.020 22 N -0.361 5.361 23 C -0.046 4.046 24 C 0.306 3.694 25 O -0.366 6.366 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.019 0.981 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.239 0.761 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.356 -0.379 -16.517 17.367 hybrid contribution -1.441 -0.700 -0.422 1.657 sum -6.797 -1.079 -16.938 18.283 Atomic orbital electron populations 1.22121 0.96455 1.01254 1.01797 1.21926 0.92063 0.98962 0.86139 0.89836 1.21024 0.86098 0.97234 0.94113 1.43873 0.99347 1.23091 1.65828 1.20935 0.97302 0.88560 0.92811 1.19893 0.97849 0.89568 1.40809 0.92804 1.25640 0.98486 1.01408 0.96668 1.70732 1.37893 1.05372 1.41318 0.83604 0.76188 0.74842 0.76317 1.22331 1.21942 1.21755 1.46030 1.64653 1.14389 1.08930 1.19620 0.78012 0.86920 0.84127 1.90653 1.51493 1.15522 1.84888 1.22165 0.97263 1.01131 0.96894 0.85369 1.22559 0.97499 1.00229 0.94996 1.22110 0.92858 0.96428 0.90587 1.48028 1.10890 1.58883 1.18285 1.21560 0.79251 1.00574 1.03242 1.20370 0.86875 0.79399 0.82764 1.90866 1.77246 1.40508 1.27949 0.92875 0.93067 0.91899 0.94508 0.91922 0.98126 0.96284 0.92922 0.91936 0.76083 0.88874 0.88144 0.90213 0.91079 0.89514 0.92257 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 3 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 4 C 0.14 3.03 5.32 -4.04 -0.02 3.01 16 5 N -0.60 -15.54 2.65 -181.12 -0.48 -16.02 16 6 C 0.15 3.79 7.81 59.85 0.47 4.26 16 7 C -0.35 -10.32 9.47 -15.06 -0.14 -10.46 16 8 H 0.05 1.61 7.97 -52.49 -0.42 1.19 16 9 C -0.02 -0.58 4.65 -17.43 -0.08 -0.66 16 10 N -0.91 -28.67 12.74 55.49 0.71 -27.96 16 11 Si 1.06 27.10 30.00 -169.99 -5.10 22.00 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 N -0.69 -12.57 4.22 -53.81 -0.23 -12.80 16 16 C 0.53 9.34 7.13 -10.99 -0.08 9.27 16 17 O -0.55 -11.08 15.19 5.56 0.08 -11.00 16 18 C -0.15 -2.00 3.33 -91.79 -0.31 -2.31 16 19 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.11 -1.20 6.45 -25.10 -0.16 -1.36 16 21 C 0.10 0.92 7.35 -3.12 -0.02 0.89 16 22 N -0.62 -7.86 3.33 -180.29 -0.60 -8.47 16 23 C 0.10 1.05 11.14 59.85 0.67 1.72 16 24 C 0.52 8.24 7.44 -10.86 -0.08 8.16 16 25 O -0.49 -9.81 13.97 5.56 0.08 -9.73 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 31 H 0.00 0.02 6.76 -51.93 -0.35 -0.33 16 32 H 0.02 0.42 4.50 -51.93 -0.23 0.19 16 33 H 0.05 1.52 7.12 -51.93 -0.37 1.15 16 34 H 0.27 8.50 6.28 -40.82 -0.26 8.25 16 35 H 0.40 7.21 5.37 -40.82 -0.22 6.99 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.28 7.06 -51.92 -0.37 0.92 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 1.15 7.53 -51.93 -0.39 0.76 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -36.16 335.42 -6.52 -42.68 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.44 Total: 3.72 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 0.40 Total: 12.51 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.60 Total: -65.24 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.16 Total: -20.73 kcal Atomic # 14 Polarization: 27.10 SS G_CDS: -5.10 Total: 22.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.16 -6.52 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754321673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.240 kcal (2) G-P(sol) polarization free energy of solvation -36.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds