Wall clock time and date at job start Tue Mar 31 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47555 * 2 1 4 4 C 1.52997 * 109.46959 * 120.00068 * 2 1 3 5 5 N 1.46502 * 109.47183 * 174.99714 * 4 2 1 6 6 C 1.46507 * 119.99878 * 270.00334 * 5 4 2 7 7 C 1.36936 * 120.00102 * 89.99777 * 5 4 2 8 8 H 1.07994 * 119.99836 * 336.04359 * 7 5 4 9 9 C 1.38811 * 119.99826 * 156.03892 * 7 5 4 10 10 N 1.31615 * 120.00341 * 331.32061 * 9 7 5 11 11 Si 1.86795 * 119.99699 * 151.32156 * 9 7 5 12 12 H 1.48504 * 109.47318 * 269.99863 * 11 9 7 13 13 H 1.48501 * 109.47404 * 29.99785 * 11 9 7 14 14 H 1.48500 * 109.47203 * 149.99914 * 11 9 7 15 15 N 1.46503 * 109.46865 * 239.99862 * 2 1 3 16 16 C 1.34772 * 120.00050 * 85.00146 * 15 2 1 17 17 O 1.21279 * 120.00036 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00253 * 180.02562 * 16 15 2 19 19 H 1.09000 * 110.43614 * 61.08277 * 18 16 15 20 20 C 1.54621 * 110.48899 * 183.77374 * 18 16 15 21 21 C 1.54482 * 101.76782 * 143.47638 * 20 18 16 22 22 N 1.46766 * 105.46889 * 334.58351 * 21 20 18 23 23 C 1.46505 * 124.34591 * 196.99771 * 22 21 20 24 24 C 1.34417 * 111.30307 * 17.01549 * 22 21 20 25 25 O 1.21274 * 124.94227 * 179.55527 * 24 22 21 26 26 H 1.08999 * 109.46781 * 59.99647 * 1 2 3 27 27 H 1.08997 * 109.47555 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46898 * 299.99962 * 1 2 3 29 29 H 1.09000 * 109.47362 * 54.99930 * 4 2 1 30 30 H 1.08996 * 109.47232 * 294.99835 * 4 2 1 31 31 H 1.09005 * 109.46408 * 271.49604 * 6 5 4 32 32 H 1.09001 * 109.47175 * 31.49177 * 6 5 4 33 33 H 1.08996 * 109.46961 * 151.50036 * 6 5 4 34 34 H 0.97003 * 119.99839 * 354.06109 * 10 9 7 35 35 H 0.97004 * 120.00083 * 265.00111 * 15 2 1 36 36 H 1.08999 * 110.97023 * 261.59401 * 20 18 16 37 37 H 1.09008 * 110.97248 * 25.35417 * 20 18 16 38 38 H 1.09001 * 110.24538 * 215.58645 * 21 20 18 39 39 H 1.08993 * 110.32368 * 93.62061 * 21 20 18 40 40 H 1.09001 * 109.46669 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47014 * 299.99709 * 23 22 21 42 42 H 1.08995 * 109.47249 * 59.99736 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1906 6 6 4.1258 -1.9921 0.5611 7 6 4.2799 0.1647 1.7240 8 1 3.8845 1.1638 1.8317 9 6 5.5788 -0.1149 2.1262 10 7 5.8951 -1.3254 2.5346 11 14 6.8776 1.2271 2.0878 12 1 7.5517 1.2259 0.7645 13 1 6.2337 2.5459 2.3140 14 1 7.8801 0.9763 3.1542 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0184 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6488 -0.7289 -3.5878 19 1 1.9761 -1.5429 -3.8581 20 6 2.8001 0.2649 -4.7626 21 6 4.0669 -0.2700 -5.4665 22 7 4.8233 -0.9776 -4.4267 23 6 6.2391 -1.3380 -4.5352 24 6 4.0499 -1.2529 -3.3623 25 8 4.4212 -1.8370 -2.3664 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1369 31 1 4.2578 -2.7789 1.3039 32 1 3.4880 -2.3562 -0.2443 33 1 5.0970 -1.7085 0.1557 34 1 5.2044 -1.9987 2.6368 35 1 2.2490 -1.6319 -1.1526 36 1 1.9365 0.2189 -5.4261 37 1 2.9559 1.2800 -4.3974 38 1 4.6552 0.5571 -5.8639 39 1 3.7936 -0.9568 -6.2675 40 1 6.5528 -1.8552 -3.6284 41 1 6.3825 -1.9929 -5.3946 42 1 6.8352 -0.4345 -4.6634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754321673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:14 Heat of formation + Delta-G solvation = -67.729249 kcal Electronic energy + Delta-G solvation = -24085.119616 eV Core-core repulsion = 20679.089535 eV Total energy + Delta-G solvation = -3406.030081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96964 -40.19898 -38.35143 -37.43240 -36.00289 -33.95470 -33.02260 -31.78755 -28.89744 -28.17686 -27.71603 -27.19787 -24.18880 -23.17081 -21.93177 -21.59722 -20.55152 -19.40287 -18.50730 -17.86724 -17.45113 -16.98858 -16.50948 -16.22649 -15.69826 -15.55343 -15.33499 -15.08945 -14.83845 -14.64792 -14.44826 -13.91658 -13.73770 -13.58828 -13.39660 -13.17188 -13.06913 -12.78101 -12.72166 -12.64702 -12.56064 -12.44587 -12.02440 -11.95742 -11.94542 -11.52851 -11.07426 -10.82096 -10.49969 -10.00649 -9.71065 -8.96332 -8.25133 -5.37773 1.24545 1.48488 1.56114 1.66273 1.74173 2.10673 2.29740 2.60271 3.16522 3.23721 3.37073 3.55622 3.79874 3.97896 4.01988 4.16279 4.27072 4.34402 4.41478 4.42954 4.63120 4.65348 4.67142 4.70065 4.82239 4.84267 4.85362 4.97643 5.04823 5.10904 5.16738 5.22188 5.31708 5.55101 5.61277 5.79889 6.02135 6.38172 6.55594 7.04541 7.08243 7.22038 7.77820 8.16500 8.97494 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.007146 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.163804 B = 3917.199740 C = 5069.707591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.125 3.875 3 H 0.043 0.957 4 C 0.141 3.859 5 N -0.613 5.613 6 C 0.174 3.826 7 C -0.355 4.355 8 H 0.043 0.957 9 C -0.071 4.071 10 N -0.937 5.937 11 Si 1.105 2.895 12 H -0.294 1.294 13 H -0.275 1.275 14 H -0.286 1.286 15 N -0.693 5.693 16 C 0.521 3.479 17 O -0.578 6.578 18 C -0.143 4.143 19 H 0.165 0.835 20 C -0.109 4.109 21 C 0.104 3.896 22 N -0.624 5.624 23 C 0.091 3.909 24 C 0.504 3.496 25 O -0.549 6.549 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.059 0.941 31 H -0.015 1.015 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.256 0.744 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 -1.033 -19.880 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.061 0.939 4 C 0.015 3.985 5 N -0.336 5.336 6 C 0.028 3.972 7 C -0.485 4.485 8 H 0.061 0.939 9 C -0.268 4.268 10 N -0.579 5.579 11 Si 0.931 3.069 12 H -0.222 1.222 13 H -0.200 1.200 14 H -0.212 1.212 15 N -0.343 5.343 16 C 0.307 3.693 17 O -0.459 6.459 18 C -0.167 4.167 19 H 0.182 0.818 20 C -0.147 4.147 21 C -0.018 4.018 22 N -0.358 5.358 23 C -0.050 4.050 24 C 0.291 3.709 25 O -0.426 6.426 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.003 0.997 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.241 0.759 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.576 -0.222 -19.131 20.231 hybrid contribution -1.117 -0.723 0.307 1.366 sum -7.694 -0.946 -18.825 20.358 Atomic orbital electron populations 1.21987 0.92831 1.02954 1.02416 1.21621 0.94706 0.96252 0.85674 0.93890 1.21225 0.83337 0.98859 0.95122 1.44032 1.01294 1.22526 1.65793 1.20604 0.95914 0.87859 0.92794 1.20054 0.98621 0.89931 1.39915 0.93917 1.26898 1.00693 1.02633 0.96605 1.70847 1.37386 1.05974 1.43732 0.82990 0.74259 0.73375 0.76301 1.22156 1.19975 1.21237 1.46069 1.64841 1.14387 1.09051 1.20350 0.77175 0.86719 0.85041 1.90635 1.52776 1.16909 1.85565 1.22239 0.96298 1.02509 0.95615 0.81806 1.22628 0.99893 0.97810 0.94334 1.22420 0.91760 0.97557 0.90015 1.48264 1.11355 1.57881 1.18281 1.21676 0.78708 1.01549 1.03076 1.20859 0.88173 0.79109 0.82783 1.90828 1.78404 1.43242 1.30164 0.92914 0.90756 0.90632 0.91936 0.92262 0.99744 0.93257 0.97060 0.93330 0.75930 0.85163 0.90935 0.88448 0.87221 0.92748 0.88798 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.48 71.98 0.68 -3.38 16 2 C 0.12 4.73 2.88 44.99 0.13 4.86 16 3 H 0.04 1.98 7.58 -2.39 -0.02 1.96 16 4 C 0.14 5.93 5.32 86.38 0.46 6.39 16 5 N -0.61 -32.54 2.65 -726.93 -1.93 -34.47 16 6 C 0.17 9.12 7.81 127.77 1.00 10.12 16 7 C -0.36 -21.37 9.47 84.03 0.80 -20.58 16 8 H 0.04 2.62 7.97 -2.91 -0.02 2.60 16 9 C -0.07 -4.34 4.65 84.86 0.39 -3.94 16 10 N -0.94 -60.58 12.74 21.65 0.28 -60.30 16 11 Si 1.10 55.75 30.00 68.60 2.06 57.80 16 12 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 13 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 15 N -0.69 -25.01 4.22 -442.53 -1.87 -26.87 16 16 C 0.52 18.10 7.13 87.66 0.62 18.72 16 17 O -0.58 -23.41 15.19 -3.03 -0.05 -23.46 16 18 C -0.14 -3.52 3.33 -11.55 -0.04 -3.56 16 19 H 0.16 2.81 8.14 -2.39 -0.02 2.79 16 20 C -0.11 -1.94 6.45 31.65 0.20 -1.73 16 21 C 0.10 1.44 7.35 86.83 0.64 2.07 16 22 N -0.62 -14.48 3.33 -842.90 -2.81 -17.29 16 23 C 0.09 1.88 11.14 127.77 1.42 3.31 16 24 C 0.50 15.61 7.44 87.90 0.65 16.27 16 25 O -0.55 -22.39 13.97 -3.01 -0.04 -22.44 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 31 H -0.02 -0.85 6.76 -2.38 -0.02 -0.87 16 32 H 0.05 2.25 4.50 -2.39 -0.01 2.24 16 33 H 0.01 0.64 7.12 -2.39 -0.02 0.63 16 34 H 0.26 16.78 6.28 -92.71 -0.58 16.20 16 35 H 0.40 14.25 5.37 -92.70 -0.50 13.75 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.74 7.06 -2.38 -0.02 1.73 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 1.49 7.53 -2.39 -0.02 1.47 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -83.11 335.42 3.31 -79.79 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.71 Total: 18.67 kcal Atomic # 6 Polarization: 21.59 SS G_CDS: 6.97 Total: 28.55 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -6.33 Total: -138.93 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -0.09 Total: -45.89 kcal Atomic # 14 Polarization: 55.75 SS G_CDS: 2.06 Total: 57.80 kcal Total: -83.11 3.31 -79.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754321673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.065 kcal (2) G-P(sol) polarization free energy of solvation -83.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds