Wall clock time and date at job start Tue Mar 31 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00222 * 2 1 4 4 C 1.50703 * 109.46945 * 270.00064 * 3 2 1 5 5 H 1.08000 * 120.00135 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99993 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00290 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00178 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46864 * 90.00305 * 8 6 4 10 10 H 1.48494 * 109.47504 * 210.00399 * 8 6 4 11 11 H 1.48497 * 109.47231 * 330.00922 * 8 6 4 12 12 C 1.34780 * 119.99726 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99788 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00198 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47086 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.47080 * 179.97438 * 15 14 12 17 17 C 1.48564 * 110.99944 * 285.41730 * 16 15 14 18 18 C 1.54375 * 104.59680 * 200.96003 * 17 16 15 19 19 C 1.54266 * 105.06062 * 23.85071 * 18 17 16 20 20 C 1.48556 * 110.99998 * 170.00030 * 16 15 14 21 21 H 1.09002 * 110.41351 * 40.26015 * 20 16 15 22 22 C 1.50704 * 110.50887 * 277.86514 * 20 16 15 23 23 N 1.34779 * 119.99628 * 181.71750 * 22 20 16 24 24 O 1.21271 * 119.99882 * 1.72232 * 22 20 16 25 25 H 1.09002 * 109.46672 * 270.00054 * 1 2 3 26 26 H 1.08999 * 109.47239 * 29.99572 * 1 2 3 27 27 H 1.08998 * 109.47368 * 150.00291 * 1 2 3 28 28 H 1.08992 * 109.46903 * 29.99938 * 3 2 1 29 29 H 1.08997 * 109.47362 * 150.00859 * 3 2 1 30 30 H 0.97003 * 120.00164 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.46852 * 59.99645 * 14 12 2 32 32 H 1.09004 * 109.46613 * 299.99926 * 14 12 2 33 33 H 1.09001 * 109.46973 * 59.99548 * 15 14 12 34 34 H 1.08996 * 109.47058 * 299.99676 * 15 14 12 35 35 H 1.08996 * 110.41154 * 82.17741 * 17 16 15 36 36 H 1.09007 * 110.50971 * 319.79279 * 17 16 15 37 37 H 1.09001 * 110.32427 * 264.95617 * 18 17 16 38 38 H 1.08996 * 110.41308 * 142.78805 * 18 17 16 39 39 H 1.08995 * 110.32360 * 241.10571 * 19 18 17 40 40 H 1.08993 * 110.40836 * 118.93872 * 19 18 17 41 41 H 0.96995 * 120.00190 * 359.97438 * 23 22 20 42 42 H 0.96998 * 119.99515 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8778 -1.6728 7 7 3.5534 3.6180 -0.6733 8 14 3.4380 3.4167 -3.4340 9 1 2.3078 4.2590 -3.9014 10 1 4.6980 4.2000 -3.4962 11 1 3.5559 2.2194 -4.3045 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0017 15 6 2.3795 -3.6353 -0.0014 16 7 1.6450 -4.9075 -0.0020 17 6 1.0589 -5.1844 1.3348 18 6 0.8156 -6.7088 1.3447 19 6 1.8042 -7.2793 0.3070 20 6 2.5618 -6.0514 -0.2426 21 1 3.4976 -5.9089 0.2979 22 6 2.8271 -6.2143 -1.7171 23 7 3.6101 -7.2207 -2.1537 24 8 2.3362 -5.4398 -2.5107 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5138 29 1 3.1500 1.1383 0.5137 30 1 4.0303 4.4439 -0.8506 31 1 0.7590 -2.5294 -0.8919 32 1 0.7583 -2.5306 0.8881 33 1 3.0056 -3.5779 0.8890 34 1 3.0068 -3.5772 -0.8909 35 1 0.1176 -4.6484 1.4556 36 1 1.7579 -4.9058 2.1235 37 1 -0.2106 -6.9303 1.0516 38 1 1.0239 -7.1206 2.3322 39 1 1.2633 -7.7807 -0.4955 40 1 2.4991 -7.9705 0.7839 41 1 4.0031 -7.8398 -1.5189 42 1 3.7812 -7.3253 -3.1027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:00 Heat of formation + Delta-G solvation = -100.759997 kcal Electronic energy + Delta-G solvation = -22704.397792 eV Core-core repulsion = 19296.935390 eV Total energy + Delta-G solvation = -3407.462402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24034 -40.55194 -38.80652 -36.63689 -34.98926 -34.73180 -34.04926 -30.99667 -30.21170 -29.28552 -27.30767 -25.64111 -24.26084 -23.21042 -21.68557 -21.00847 -19.90016 -18.73415 -18.56132 -17.94978 -17.67567 -17.09783 -16.74674 -16.57083 -16.17219 -15.82871 -15.46955 -15.23401 -14.78851 -14.38377 -14.21725 -14.12647 -13.77745 -13.46910 -13.31914 -13.25031 -13.05968 -12.82969 -12.70542 -12.58434 -12.33886 -12.23418 -12.10478 -11.86427 -11.72577 -11.49138 -10.87023 -10.66458 -10.63373 -10.62146 -9.51402 -9.43673 -8.25067 -6.40047 1.33456 1.36738 1.47527 1.67252 1.80759 2.23013 2.36774 2.52159 3.03760 3.12255 3.57477 3.66903 3.86838 3.97056 4.05380 4.17781 4.22269 4.32495 4.39816 4.53999 4.65016 4.70205 4.74443 4.86868 4.87911 4.94024 4.96412 5.03995 5.07958 5.17568 5.20558 5.31442 5.54015 5.75822 5.82515 5.93918 5.94714 6.04244 6.52286 6.66714 6.76477 7.25388 7.41315 7.45618 8.81965 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003756 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.735508 B = 7453.205958 C = 8245.416350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.547 4.547 5 H 0.048 0.952 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.109 4.109 15 C 0.077 3.923 16 N -0.503 5.503 17 C 0.022 3.978 18 C -0.116 4.116 19 C -0.104 4.104 20 C 0.035 3.965 21 H 0.089 0.911 22 C 0.517 3.483 23 N -0.837 5.837 24 O -0.578 6.578 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.026 0.974 29 H -0.002 1.002 30 H 0.268 0.732 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.418 0.582 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 -26.386 5.338 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.066 0.934 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.149 4.149 15 C -0.052 4.052 16 N -0.228 5.228 17 C -0.105 4.105 18 C -0.154 4.154 19 C -0.142 4.142 20 C -0.077 4.077 21 H 0.106 0.894 22 C 0.301 3.699 23 N -0.402 5.402 24 O -0.457 6.457 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.016 0.984 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.249 0.751 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.903 -25.564 4.625 26.880 hybrid contribution 1.503 0.699 -0.516 1.736 sum -5.400 -24.865 4.109 25.774 Atomic orbital electron populations 1.21940 0.77767 1.03877 1.02764 1.48202 1.08515 1.06378 1.71121 1.18753 0.91141 0.80434 0.95909 1.21714 1.37088 1.06636 0.93102 0.93351 1.25847 0.94771 0.96319 1.02080 1.70044 1.38870 1.14778 1.32968 0.85421 0.78334 0.78106 0.78986 1.18493 1.20202 1.20284 1.21350 0.87792 0.86750 0.75769 1.90613 1.16718 1.88304 1.52754 1.21421 0.98754 0.88912 1.05809 1.21698 0.94412 0.88927 1.00173 1.65013 1.28732 0.99854 1.29184 1.23366 1.00599 0.98193 0.88335 1.22297 1.00266 0.92816 1.00034 1.22311 0.98498 0.94335 0.99093 1.22757 0.98040 0.94673 0.92245 0.89358 1.20800 0.77540 0.80243 0.91292 1.43656 1.51857 1.31705 1.13018 1.90760 1.51744 1.44976 1.58181 0.90619 0.91595 0.89180 0.95565 0.98391 0.92281 0.87961 0.86226 0.94343 0.93670 0.88922 0.93064 0.90304 0.88555 0.90761 0.87109 0.75081 0.76247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.53 10.24 127.77 1.31 3.84 16 2 N -0.61 -27.92 2.86 -851.14 -2.43 -30.35 16 3 C 0.26 14.77 5.16 85.63 0.44 15.21 16 4 C -0.55 -33.44 9.39 25.60 0.24 -33.20 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.53 5.46 84.65 0.46 1.00 16 7 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 8 Si 0.97 47.06 29.54 68.60 2.03 49.09 16 9 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 12 C 0.49 22.45 7.67 87.66 0.67 23.12 16 13 O -0.60 -33.55 15.56 -3.04 -0.05 -33.60 16 14 C -0.11 -3.53 4.37 29.85 0.13 -3.40 16 15 C 0.08 2.48 3.92 86.30 0.34 2.82 16 16 N -0.50 -12.41 4.61 -861.01 -3.97 -16.38 16 17 C 0.02 0.37 5.91 86.45 0.51 0.88 16 18 C -0.12 -1.24 7.00 31.49 0.22 -1.02 16 19 C -0.10 -1.12 6.51 31.49 0.20 -0.92 16 20 C 0.03 0.68 2.67 44.32 0.12 0.79 16 21 H 0.09 1.54 8.00 -2.39 -0.02 1.52 16 22 C 0.52 12.42 7.08 87.66 0.62 13.05 16 23 N -0.84 -11.33 8.83 -173.53 -1.53 -12.86 16 24 O -0.58 -20.99 16.68 -3.00 -0.05 -21.04 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 27 H 0.09 2.36 6.44 -2.39 -0.02 2.34 16 28 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 29 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 30 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.10 3.26 7.40 -2.39 -0.02 3.24 16 32 H 0.12 2.96 7.43 -2.38 -0.02 2.94 16 33 H 0.04 1.24 7.73 -2.39 -0.02 1.23 16 34 H 0.04 1.81 7.31 -2.39 -0.02 1.79 16 35 H 0.09 1.45 7.85 -2.39 -0.02 1.43 16 36 H 0.05 0.85 7.75 -2.38 -0.02 0.83 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.86 7.85 -2.39 -0.02 0.85 16 40 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.42 2.30 8.83 -92.71 -0.82 1.48 16 42 H 0.41 5.12 8.93 -92.71 -0.83 4.29 16 Total: -1.00 -88.67 345.83 -1.07 -89.74 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -0.61 Total: 10.76 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 5.27 Total: 22.18 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -7.65 Total: -117.14 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.10 Total: -54.63 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -88.67 -1.07 -89.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.020 kcal (2) G-P(sol) polarization free energy of solvation -88.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds