Wall clock time and date at job start Tue Mar 31 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99888 * 2 1 4 4 N 1.34775 * 119.99604 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99863 * 180.02562 * 4 2 1 6 6 C 1.53118 * 109.52490 * 155.00011 * 5 4 2 7 7 C 1.53036 * 109.28068 * 177.61960 * 6 5 4 8 8 N 1.46843 * 109.52229 * 300.82162 * 7 6 5 9 9 C 1.46902 * 110.99818 * 185.83572 * 8 7 6 10 10 C 1.50702 * 109.47027 * 169.99758 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46919 * 60.00155 * 18 16 14 20 20 H 1.48496 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47194 * 300.00219 * 18 16 14 22 22 C 1.46848 * 111.20193 * 61.74013 * 8 7 6 23 23 C 1.53031 * 109.52183 * 298.25870 * 22 8 7 24 24 H 1.09000 * 109.47013 * 269.99983 * 1 2 3 25 25 H 1.08997 * 109.46809 * 29.99635 * 1 2 3 26 26 H 1.08999 * 109.47103 * 149.99657 * 1 2 3 27 27 H 0.96998 * 120.00149 * 359.97438 * 4 2 1 28 28 H 1.08994 * 109.52691 * 34.86799 * 5 4 2 29 29 H 1.09001 * 109.50142 * 57.67761 * 6 5 4 30 30 H 1.08995 * 109.50409 * 297.56383 * 6 5 4 31 31 H 1.08996 * 109.46465 * 180.80442 * 7 6 5 32 32 H 1.09004 * 109.45131 * 60.83038 * 7 6 5 33 33 H 1.09004 * 109.47131 * 50.00001 * 9 8 7 34 34 H 1.08994 * 109.47471 * 289.99751 * 9 8 7 35 35 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 36 36 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 37 37 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 38 38 H 0.97000 * 119.99614 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.45649 * 58.27112 * 22 8 7 40 40 H 1.08995 * 109.46466 * 178.24178 * 22 8 7 41 41 H 1.09001 * 109.50516 * 299.23843 * 23 22 8 42 42 H 1.09000 * 109.50603 * 179.12077 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1573 -2.4757 0.6093 7 6 5.6865 -2.4955 0.5529 8 7 6.1276 -2.3793 -0.8429 9 6 7.5847 -2.5335 -0.9491 10 6 7.9726 -2.6547 -2.4002 11 8 7.1193 -2.6159 -3.2613 12 7 9.2682 -2.8001 -2.7416 13 6 9.6460 -2.9119 -4.1526 14 6 11.1411 -3.0653 -4.2619 15 1 11.7492 -3.0787 -3.3694 16 6 11.7327 -3.1896 -5.5010 17 7 10.9922 -3.1739 -6.5878 18 14 13.5861 -3.3805 -5.6364 19 1 14.0118 -4.6045 -4.9111 20 1 13.9689 -3.4937 -7.0667 21 1 14.2508 -2.1946 -5.0388 22 6 5.6885 -1.1090 -1.4346 23 6 4.1594 -1.0478 -1.4376 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6958 -2.0072 -0.0005 28 1 4.0100 -0.3249 0.5880 29 1 3.7613 -3.3194 0.0441 30 1 3.8305 -2.5463 1.6466 31 1 6.0533 -3.4320 0.9729 32 1 6.0819 -1.6593 1.1296 33 1 7.8950 -3.4310 -0.4139 34 1 8.0750 -1.6630 -0.5134 35 1 9.9507 -2.8310 -2.0530 36 1 9.1587 -3.7826 -4.5913 37 1 9.3326 -2.0137 -4.6848 38 1 11.4085 -3.2610 -7.4596 39 1 6.0841 -0.2795 -0.8485 40 1 6.0568 -1.0386 -2.4581 41 1 3.7635 -1.8692 -2.0348 42 1 3.8340 -0.0983 -1.8625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050991634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:03 Heat of formation + Delta-G solvation = -79.768115 kcal Electronic energy + Delta-G solvation = -22157.469752 eV Core-core repulsion = 18750.917627 eV Total energy + Delta-G solvation = -3406.552126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23368 -39.23153 -37.87687 -35.11614 -34.10269 -32.39439 -32.12230 -30.91290 -29.80073 -27.95179 -26.09999 -23.31954 -23.29184 -22.11020 -20.72353 -19.99963 -19.62897 -17.16809 -17.02274 -16.70653 -15.81394 -15.66459 -15.48642 -15.16939 -14.83910 -14.40177 -14.22265 -13.91746 -13.75292 -13.48967 -13.29127 -12.81404 -12.63440 -12.53754 -12.34211 -12.09004 -11.88042 -11.53008 -11.36814 -11.27949 -10.99336 -10.91682 -10.73335 -10.66224 -10.30160 -10.04811 -9.40381 -9.25552 -8.96035 -8.71796 -8.21250 -7.83774 -6.15879 -4.22886 2.42516 2.98216 3.25487 3.30260 3.31705 3.40383 3.66156 4.25740 4.41232 4.48350 4.63901 4.76700 4.88322 4.91296 5.06110 5.16288 5.19991 5.23045 5.33262 5.41662 5.44432 5.48505 5.55899 5.57976 5.64499 5.76392 5.83787 5.98338 6.13009 6.31825 6.36247 6.98718 7.14324 7.28664 7.33919 7.46814 7.53496 7.68470 7.98314 8.01206 8.65184 8.80040 9.14370 9.43881 10.94275 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.002668 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.684151 B =10492.708076 C =10849.239556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.548 6.548 4 N -0.726 5.726 5 C 0.141 3.859 6 C -0.120 4.120 7 C 0.059 3.941 8 N -0.520 5.520 9 C 0.035 3.965 10 C 0.498 3.502 11 O -0.538 6.538 12 N -0.715 5.715 13 C 0.252 3.748 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.053 3.947 23 C -0.120 4.120 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.400 0.600 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.389 0.611 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.027 0.973 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.964 1.398 17.414 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.425 6.425 4 N -0.377 5.377 5 C 0.036 3.964 6 C -0.159 4.159 7 C -0.070 4.070 8 N -0.244 5.244 9 C -0.096 4.096 10 C 0.282 3.718 11 O -0.416 6.416 12 N -0.365 5.365 13 C 0.131 3.869 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.075 4.075 23 C -0.159 4.159 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.234 0.766 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.222 0.778 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.349 1.802 16.286 23.864 hybrid contribution 1.525 0.035 0.617 1.645 sum -15.824 1.837 16.904 23.227 Atomic orbital electron populations 1.21888 0.91837 1.04921 1.04601 1.20829 0.90579 0.83621 0.75435 1.90735 1.70814 1.31437 1.49502 1.46185 1.07400 1.08669 1.75463 1.21103 0.79105 0.98678 0.97479 1.21831 0.95776 0.97400 1.00866 1.22031 0.94646 1.01263 0.89026 1.61584 1.10951 1.35569 1.16338 1.21996 0.88870 1.02505 0.96207 1.20294 0.83375 0.77953 0.90154 1.90628 1.49468 1.50238 1.51299 1.46458 1.06313 1.72012 1.11669 1.19070 0.95013 0.97511 0.75308 1.21195 0.91497 1.52517 0.93007 0.91980 1.24957 0.98833 0.94784 0.95472 1.69967 1.35703 1.48591 0.98025 0.86474 0.84515 0.78725 0.77179 1.20067 1.21076 1.20089 1.22238 0.94797 0.88278 1.02170 1.21908 0.95376 1.02725 0.95930 0.89004 0.88937 0.90172 0.76575 0.89856 0.90261 0.91039 0.90127 0.94750 0.88300 0.92413 0.77841 0.95558 0.95640 0.92394 0.95451 0.87858 0.90612 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.30 36.01 0.37 -0.60 16 2 C 0.51 5.12 7.91 -10.98 -0.09 5.03 16 3 O -0.55 -8.20 16.76 5.56 0.09 -8.11 16 4 N -0.73 -6.12 5.08 -53.68 -0.27 -6.39 16 5 C 0.14 1.47 2.52 -67.81 -0.17 1.30 16 6 C -0.12 -1.04 5.57 -26.65 -0.15 -1.19 16 7 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 8 N -0.52 -7.16 4.40 -236.12 -1.04 -8.20 16 9 C 0.04 0.50 5.45 -4.97 -0.03 0.47 16 10 C 0.50 9.80 7.50 -10.98 -0.08 9.72 16 11 O -0.54 -12.76 14.33 5.55 0.08 -12.68 16 12 N -0.72 -14.91 5.55 -61.47 -0.34 -15.25 16 13 C 0.25 6.67 5.43 -5.20 -0.03 6.65 16 14 C -0.54 -14.76 9.28 -34.44 -0.32 -15.07 16 15 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.05 0.78 5.11 -3.84 -0.02 0.76 16 23 C -0.12 -1.56 5.68 -26.65 -0.15 -1.71 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.40 2.17 8.60 -40.82 -0.35 1.82 16 28 H 0.08 1.02 7.58 -51.93 -0.39 0.62 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 1.17 7.99 -51.93 -0.41 0.75 16 34 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 1.87 5.78 -51.93 -0.30 1.57 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -34.97 345.79 -8.16 -43.13 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.82 Total: 4.31 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -0.78 Total: 7.59 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.92 Total: -55.30 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.97 -8.16 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050991634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.639 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds