Wall clock time and date at job start Tue Mar 31 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99888 * 2 1 4 4 N 1.34775 * 119.99604 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99863 * 180.02562 * 4 2 1 6 6 C 1.53118 * 109.52490 * 155.00011 * 5 4 2 7 7 C 1.53036 * 109.28068 * 177.61960 * 6 5 4 8 8 N 1.46843 * 109.52229 * 300.82162 * 7 6 5 9 9 C 1.46902 * 110.99818 * 185.83572 * 8 7 6 10 10 C 1.50702 * 109.47027 * 169.99758 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46919 * 60.00155 * 18 16 14 20 20 H 1.48496 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47194 * 300.00219 * 18 16 14 22 22 C 1.46848 * 111.20193 * 61.74013 * 8 7 6 23 23 C 1.53031 * 109.52183 * 298.25870 * 22 8 7 24 24 H 1.09000 * 109.47013 * 269.99983 * 1 2 3 25 25 H 1.08997 * 109.46809 * 29.99635 * 1 2 3 26 26 H 1.08999 * 109.47103 * 149.99657 * 1 2 3 27 27 H 0.96998 * 120.00149 * 359.97438 * 4 2 1 28 28 H 1.08994 * 109.52691 * 34.86799 * 5 4 2 29 29 H 1.09001 * 109.50142 * 57.67761 * 6 5 4 30 30 H 1.08995 * 109.50409 * 297.56383 * 6 5 4 31 31 H 1.08996 * 109.46465 * 180.80442 * 7 6 5 32 32 H 1.09004 * 109.45131 * 60.83038 * 7 6 5 33 33 H 1.09004 * 109.47131 * 50.00001 * 9 8 7 34 34 H 1.08994 * 109.47471 * 289.99751 * 9 8 7 35 35 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 36 36 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 37 37 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 38 38 H 0.97000 * 119.99614 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.45649 * 58.27112 * 22 8 7 40 40 H 1.08995 * 109.46466 * 178.24178 * 22 8 7 41 41 H 1.09001 * 109.50516 * 299.23843 * 23 22 8 42 42 H 1.09000 * 109.50603 * 179.12077 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1573 -2.4757 0.6093 7 6 5.6865 -2.4955 0.5529 8 7 6.1276 -2.3793 -0.8429 9 6 7.5847 -2.5335 -0.9491 10 6 7.9726 -2.6547 -2.4002 11 8 7.1193 -2.6159 -3.2613 12 7 9.2682 -2.8001 -2.7416 13 6 9.6460 -2.9119 -4.1526 14 6 11.1411 -3.0653 -4.2619 15 1 11.7492 -3.0787 -3.3694 16 6 11.7327 -3.1896 -5.5010 17 7 10.9922 -3.1739 -6.5878 18 14 13.5861 -3.3805 -5.6364 19 1 14.0118 -4.6045 -4.9111 20 1 13.9689 -3.4937 -7.0667 21 1 14.2508 -2.1946 -5.0388 22 6 5.6885 -1.1090 -1.4346 23 6 4.1594 -1.0478 -1.4376 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6958 -2.0072 -0.0005 28 1 4.0100 -0.3249 0.5880 29 1 3.7613 -3.3194 0.0441 30 1 3.8305 -2.5463 1.6466 31 1 6.0533 -3.4320 0.9729 32 1 6.0819 -1.6593 1.1296 33 1 7.8950 -3.4310 -0.4139 34 1 8.0750 -1.6630 -0.5134 35 1 9.9507 -2.8310 -2.0530 36 1 9.1587 -3.7826 -4.5913 37 1 9.3326 -2.0137 -4.6848 38 1 11.4085 -3.2610 -7.4596 39 1 6.0841 -0.2795 -0.8485 40 1 6.0568 -1.0386 -2.4581 41 1 3.7635 -1.8692 -2.0348 42 1 3.8340 -0.0983 -1.8625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050991634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:02 Heat of formation + Delta-G solvation = -108.940850 kcal Electronic energy + Delta-G solvation = -22158.734777 eV Core-core repulsion = 18750.917627 eV Total energy + Delta-G solvation = -3407.817150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20443 -40.53471 -39.09715 -36.26656 -35.87144 -34.34279 -33.11974 -31.85232 -30.60447 -29.58197 -27.54184 -24.79617 -24.26818 -23.62006 -21.54740 -21.33519 -20.89706 -18.91398 -17.92564 -17.59579 -17.42238 -17.11287 -16.64858 -16.43374 -16.18328 -15.74535 -15.57067 -15.17527 -14.80458 -14.51730 -14.30539 -14.12481 -14.08342 -13.80676 -13.34783 -13.11821 -13.05693 -12.91015 -12.83325 -12.64848 -12.36914 -12.24408 -12.19661 -11.83902 -11.58245 -11.50504 -10.92552 -10.78693 -10.62036 -10.07004 -9.78580 -9.27362 -8.28977 -6.45778 1.42780 1.47076 1.55230 1.65116 1.82409 2.26254 2.29640 2.47373 3.04360 3.05722 3.69167 3.82944 3.94075 4.01006 4.07178 4.22103 4.30080 4.35969 4.45796 4.50461 4.53390 4.62860 4.68327 4.72303 4.88497 4.95555 5.02899 5.10486 5.11978 5.12292 5.25014 5.30004 5.49782 5.52388 5.71540 5.85481 5.94163 6.15825 6.61207 6.65694 6.97383 7.24027 7.29792 7.56025 8.83051 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.002668 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.684151 B =10492.708076 C =10849.239556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.500 3.500 3 O -0.605 6.605 4 N -0.713 5.713 5 C 0.147 3.853 6 C -0.111 4.111 7 C 0.056 3.944 8 N -0.536 5.536 9 C 0.049 3.951 10 C 0.492 3.508 11 O -0.585 6.585 12 N -0.711 5.711 13 C 0.269 3.731 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.286 1.286 21 H -0.262 1.262 22 C 0.058 3.942 23 C -0.113 4.113 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.418 0.582 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.135 0.865 34 H 0.083 0.917 35 H 0.408 0.592 36 H -0.014 1.014 37 H -0.017 1.017 38 H 0.268 0.732 39 H 0.031 0.969 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.639 0.149 20.540 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.290 3.710 3 O -0.486 6.486 4 N -0.365 5.365 5 C 0.041 3.959 6 C -0.149 4.149 7 C -0.071 4.071 8 N -0.261 5.261 9 C -0.082 4.082 10 C 0.279 3.721 11 O -0.465 6.465 12 N -0.362 5.362 13 C 0.146 3.854 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.808 3.192 19 H -0.185 1.185 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.070 4.070 23 C -0.152 4.152 24 H 0.131 0.869 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.256 0.744 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.244 0.756 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.048 0.511 19.482 25.893 hybrid contribution 1.332 0.432 -0.376 1.450 sum -15.717 0.943 19.106 24.758 Atomic orbital electron populations 1.21898 0.88090 1.06030 1.06287 1.21691 0.92414 0.82945 0.73993 1.90711 1.72267 1.33463 1.52207 1.46084 1.06671 1.09338 1.74379 1.20917 0.80316 0.99460 0.95161 1.21808 0.94818 0.95855 1.02429 1.22213 0.95534 1.02869 0.86507 1.61542 1.10740 1.34723 1.19126 1.21952 0.89544 1.05196 0.91484 1.21423 0.82128 0.75921 0.92607 1.90616 1.50639 1.51791 1.53495 1.46192 1.07744 1.72492 1.09741 1.18475 0.95071 0.93725 0.78118 1.21607 0.91650 1.52075 0.94059 0.89720 1.26099 1.04702 0.94026 0.94951 1.70141 1.38348 1.49776 0.98802 0.85197 0.77284 0.79501 0.77170 1.18487 1.21186 1.18699 1.22027 0.95752 0.89338 0.99910 1.21795 0.94440 1.01130 0.97868 0.86871 0.89441 0.87435 0.74448 0.91509 0.89904 0.88047 0.87700 0.93784 0.84722 0.89971 0.75622 0.99632 0.99877 0.92283 0.95051 0.92232 0.91534 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.30 71.24 0.73 -0.76 16 2 C 0.50 9.68 7.91 87.66 0.69 10.38 16 3 O -0.60 -18.57 16.76 -3.02 -0.05 -18.62 16 4 N -0.71 -10.93 5.08 -442.15 -2.25 -13.18 16 5 C 0.15 2.91 2.52 45.07 0.11 3.02 16 6 C -0.11 -1.57 5.57 30.65 0.17 -1.40 16 7 C 0.06 0.94 5.46 86.33 0.47 1.41 16 8 N -0.54 -14.05 4.40 -900.94 -3.96 -18.01 16 9 C 0.05 1.28 5.45 85.56 0.47 1.74 16 10 C 0.49 19.66 7.50 87.66 0.66 20.32 16 11 O -0.58 -29.24 14.33 -3.04 -0.04 -29.28 16 12 N -0.71 -29.99 5.55 -466.79 -2.59 -32.58 16 13 C 0.27 14.96 5.43 85.63 0.46 15.42 16 14 C -0.56 -30.43 9.28 25.60 0.24 -30.19 16 15 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 16 C 0.00 0.09 5.46 84.65 0.46 0.56 16 17 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 18 Si 0.99 42.50 29.54 68.60 2.03 44.53 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 22 C 0.06 1.76 5.11 86.32 0.44 2.20 16 23 C -0.11 -3.03 5.68 30.65 0.17 -2.86 16 24 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.42 3.41 8.60 -92.71 -0.80 2.62 16 28 H 0.07 1.59 7.58 -2.39 -0.02 1.58 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.32 8.01 -2.39 -0.02 1.30 16 32 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.14 2.63 7.99 -2.38 -0.02 2.61 16 34 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.41 13.94 8.32 -92.71 -0.77 13.17 16 36 H -0.01 -0.90 8.14 -2.39 -0.02 -0.91 16 37 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 2.32 5.78 -2.39 -0.01 2.31 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -82.53 345.79 -2.04 -84.57 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.54 Total: 19.38 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 5.09 Total: 19.84 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -8.51 Total: -120.41 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.09 Total: -47.91 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -82.53 -2.04 -84.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050991634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.368 kcal (2) G-P(sol) polarization free energy of solvation -82.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds