Wall clock time and date at job start Tue Mar 31 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46491 * 119.99813 * 2 1 4 4 C 1.50705 * 109.47290 * 270.00009 * 3 2 1 5 5 H 1.07999 * 119.99467 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99993 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00594 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99864 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46964 * 60.00122 * 8 6 4 10 10 H 1.48503 * 109.47173 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47019 * 300.00113 * 8 6 4 12 12 C 1.34775 * 119.99925 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00164 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00076 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47111 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47198 * 184.21892 * 15 14 12 17 17 C 1.45564 * 110.99700 * 67.20982 * 16 15 14 18 18 C 1.53062 * 110.81756 * 163.60008 * 17 16 15 19 19 N 1.47255 * 108.55890 * 85.75809 * 18 17 16 20 20 C 1.33625 * 120.10319 * 289.33067 * 19 18 17 21 21 O 1.21279 * 120.05285 * 180.22404 * 20 19 18 22 22 C 1.51493 * 119.89954 * 0.23824 * 20 19 18 23 23 C 1.45592 * 110.96905 * 296.65735 * 16 15 14 24 24 H 1.09007 * 109.46958 * 269.99970 * 1 2 3 25 25 H 1.08991 * 109.47125 * 29.99649 * 1 2 3 26 26 H 1.08998 * 109.47287 * 150.00141 * 1 2 3 27 27 H 1.08998 * 109.47272 * 30.00151 * 3 2 1 28 28 H 1.09007 * 109.47397 * 150.00297 * 3 2 1 29 29 H 0.97000 * 120.00323 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46749 * 60.00100 * 14 12 2 31 31 H 1.09002 * 109.47130 * 300.00024 * 14 12 2 32 32 H 1.09002 * 109.46797 * 64.22316 * 15 14 12 33 33 H 1.08998 * 109.47533 * 304.22520 * 15 14 12 34 34 H 1.09000 * 109.20198 * 43.26608 * 17 16 15 35 35 H 1.09005 * 109.19656 * 283.92912 * 17 16 15 36 36 H 1.08997 * 109.61993 * 205.47846 * 18 17 16 37 37 H 1.09003 * 109.62178 * 325.85191 * 18 17 16 38 38 H 0.97007 * 119.94782 * 109.29989 * 19 18 17 39 39 H 1.09002 * 109.68152 * 189.74439 * 22 20 19 40 40 H 1.09003 * 109.68473 * 310.29416 * 22 20 19 41 41 H 1.09001 * 109.27309 * 75.85597 * 23 16 15 42 42 H 1.09004 * 109.20923 * 316.43080 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8774 -1.6727 7 7 3.5550 3.6171 -0.6732 8 14 3.4375 3.4171 -3.4340 9 1 2.1397 3.5955 -4.1332 10 1 4.1812 4.7025 -3.4340 11 1 4.2392 2.3819 -4.1347 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6479 -4.9049 -0.1037 17 6 1.0017 -5.0318 -1.4018 18 6 0.5927 -6.4828 -1.6664 19 7 -0.7308 -6.7141 -1.0635 20 6 -0.8628 -6.7615 0.2654 21 8 -1.9526 -6.9561 0.7608 22 6 0.3507 -6.5715 1.1521 23 6 0.7936 -5.1086 1.0575 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.0318 4.4430 -0.8504 30 1 0.7584 -2.5298 -0.8903 31 1 0.7591 -2.5303 0.8897 32 1 2.9561 -3.6213 0.9232 33 1 3.0544 -3.5355 -0.8520 34 1 1.6926 -4.7066 -2.1796 35 1 0.1140 -4.3995 -1.4237 36 1 0.5412 -6.6585 -2.7409 37 1 1.3241 -7.1565 -1.2200 38 1 -1.5080 -6.8318 -1.6319 39 1 0.0926 -6.8110 2.1837 40 1 1.1575 -7.2220 0.8146 41 1 -0.0869 -4.4717 0.9724 42 1 1.3443 -4.8411 1.9593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062100460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:06 Heat of formation + Delta-G solvation = -65.709562 kcal Electronic energy + Delta-G solvation = -22781.129482 eV Core-core repulsion = 19375.186981 eV Total energy + Delta-G solvation = -3405.942501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53108 -39.17818 -37.79073 -35.25305 -34.81118 -32.70648 -32.22944 -30.76989 -28.44855 -27.34668 -25.77644 -24.86601 -23.94753 -22.46418 -20.72160 -20.03407 -18.45385 -17.56058 -17.10354 -16.60667 -16.48477 -15.82366 -15.41664 -15.14219 -14.97717 -14.68508 -14.33362 -14.15279 -13.73478 -13.43999 -12.78453 -12.73088 -12.45374 -12.31837 -12.14862 -12.05039 -11.95977 -11.86906 -11.55090 -11.45679 -11.21096 -10.95084 -10.77870 -10.59133 -10.19114 -10.02659 -9.68055 -9.44637 -8.99644 -8.47370 -8.43086 -7.68538 -6.07104 -4.12394 2.39498 3.01748 3.29066 3.33265 3.34217 3.40204 3.51589 3.96913 4.22605 4.41833 4.61218 4.69894 4.82467 4.89906 5.02177 5.04881 5.10632 5.14079 5.18610 5.27681 5.44825 5.46805 5.55772 5.62463 5.68476 5.74031 5.83775 5.92983 6.15989 6.20929 6.48867 6.80740 6.85661 7.02172 7.06291 7.40727 7.49814 7.88653 7.97002 8.20064 8.37662 8.86161 9.04897 9.52786 11.00964 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029243 B = 0.003350 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.264343 B = 8356.977055 C = 8532.537712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.507 3.493 13 O -0.542 6.542 14 C -0.177 4.177 15 C 0.081 3.919 16 N -0.560 5.560 17 C 0.041 3.959 18 C 0.108 3.892 19 N -0.728 5.728 20 C 0.516 3.484 21 O -0.555 6.555 22 C -0.138 4.138 23 C 0.071 3.929 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.399 0.601 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.038 0.962 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -19.472 -0.147 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.292 3.708 13 O -0.420 6.420 14 C -0.219 4.219 15 C -0.047 4.047 16 N -0.284 5.284 17 C -0.088 4.088 18 C -0.016 4.016 19 N -0.381 5.381 20 C 0.303 3.697 21 O -0.433 6.433 22 C -0.179 4.179 23 C -0.057 4.057 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.235 0.765 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.056 0.944 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.588 -19.709 0.306 20.783 hybrid contribution -0.850 1.135 -1.369 1.971 sum -7.438 -18.574 -1.063 20.036 Atomic orbital electron populations 1.21613 0.81566 1.02415 1.00351 1.48189 1.06105 1.08013 1.71217 1.19285 0.92546 0.78116 0.97491 1.21382 1.36684 1.06360 0.92242 0.92604 1.24940 0.95320 0.96364 0.97470 1.69921 1.38241 1.14374 1.30817 0.86553 0.78345 0.77869 0.84610 1.20276 1.21120 1.20154 1.20186 0.88050 0.84961 0.77557 1.90674 1.13803 1.87265 1.50256 1.22378 1.00682 0.95488 1.03354 1.21958 0.94582 0.83344 1.04781 1.59793 1.32126 1.34987 1.01502 1.22303 0.98751 0.96196 0.91563 1.21929 0.84004 0.96698 0.98977 1.46117 1.11505 1.73399 1.07079 1.20805 0.90829 0.74995 0.83094 1.90751 1.28616 1.49525 1.74418 1.22114 0.96320 0.98932 1.00500 1.21642 0.95916 0.94055 0.94078 0.93791 0.90764 0.92751 0.95087 0.93800 0.92612 0.89764 0.89826 0.89631 0.89308 0.88979 0.93981 0.88888 0.89351 0.76509 0.87986 0.88067 0.94374 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.60 -12.62 2.86 -182.95 -0.52 -13.15 16 3 C 0.24 6.39 5.16 -5.20 -0.03 6.37 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.51 10.08 7.67 -10.98 -0.08 9.99 16 13 O -0.54 -13.08 15.52 5.56 0.09 -12.99 16 14 C -0.18 -2.40 3.73 -27.88 -0.10 -2.51 16 15 C 0.08 0.99 4.53 -3.83 -0.02 0.97 16 16 N -0.56 -5.27 4.34 -236.71 -1.03 -6.30 16 17 C 0.04 0.33 4.74 -4.51 -0.02 0.31 16 18 C 0.11 0.64 6.50 -3.60 -0.02 0.62 16 19 N -0.73 -5.69 5.31 -59.73 -0.32 -6.01 16 20 C 0.52 5.46 7.10 -11.11 -0.08 5.38 16 21 O -0.56 -8.25 17.93 5.56 0.10 -8.15 16 22 C -0.14 -1.15 5.62 -27.42 -0.15 -1.30 16 23 C 0.07 0.64 4.55 -4.46 -0.02 0.62 16 24 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 25 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 26 H 0.05 0.71 6.44 -51.93 -0.33 0.37 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.08 1.06 6.03 -51.93 -0.31 0.74 16 31 H 0.08 1.02 7.03 -51.93 -0.37 0.65 16 32 H 0.09 1.10 7.99 -51.93 -0.41 0.69 16 33 H 0.09 1.20 7.73 -51.93 -0.40 0.80 16 34 H 0.09 0.72 7.79 -51.93 -0.40 0.31 16 35 H 0.04 0.38 7.11 -51.93 -0.37 0.01 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.51 7.03 -51.93 -0.37 0.14 16 38 H 0.40 2.76 8.92 -40.82 -0.36 2.39 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.72 7.07 -51.93 -0.37 0.35 16 41 H 0.04 0.39 7.06 -51.93 -0.37 0.02 16 42 H 0.09 0.77 7.86 -51.93 -0.41 0.36 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -35.18 336.97 -7.74 -42.92 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.51 Total: -1.07 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.34 Total: 8.81 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -1.13 Total: -51.25 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.19 Total: -21.14 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.18 -7.74 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062100460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.791 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds