Wall clock time and date at job start Tue Mar 31 2020 03:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46491 * 119.99813 * 2 1 4 4 C 1.50705 * 109.47290 * 270.00009 * 3 2 1 5 5 H 1.07999 * 119.99467 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99993 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00594 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99864 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46964 * 60.00122 * 8 6 4 10 10 H 1.48503 * 109.47173 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47019 * 300.00113 * 8 6 4 12 12 C 1.34775 * 119.99925 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00164 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00076 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47111 * 179.97438 * 14 12 2 16 16 N 1.46900 * 109.47198 * 184.21892 * 15 14 12 17 17 C 1.45564 * 110.99700 * 67.20982 * 16 15 14 18 18 C 1.53062 * 110.81756 * 163.60008 * 17 16 15 19 19 N 1.47255 * 108.55890 * 85.75809 * 18 17 16 20 20 C 1.33625 * 120.10319 * 289.33067 * 19 18 17 21 21 O 1.21279 * 120.05285 * 180.22404 * 20 19 18 22 22 C 1.51493 * 119.89954 * 0.23824 * 20 19 18 23 23 C 1.45592 * 110.96905 * 296.65735 * 16 15 14 24 24 H 1.09007 * 109.46958 * 269.99970 * 1 2 3 25 25 H 1.08991 * 109.47125 * 29.99649 * 1 2 3 26 26 H 1.08998 * 109.47287 * 150.00141 * 1 2 3 27 27 H 1.08998 * 109.47272 * 30.00151 * 3 2 1 28 28 H 1.09007 * 109.47397 * 150.00297 * 3 2 1 29 29 H 0.97000 * 120.00323 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46749 * 60.00100 * 14 12 2 31 31 H 1.09002 * 109.47130 * 300.00024 * 14 12 2 32 32 H 1.09002 * 109.46797 * 64.22316 * 15 14 12 33 33 H 1.08998 * 109.47533 * 304.22520 * 15 14 12 34 34 H 1.09000 * 109.20198 * 43.26608 * 17 16 15 35 35 H 1.09005 * 109.19656 * 283.92912 * 17 16 15 36 36 H 1.08997 * 109.61993 * 205.47846 * 18 17 16 37 37 H 1.09003 * 109.62178 * 325.85191 * 18 17 16 38 38 H 0.97007 * 119.94782 * 109.29989 * 19 18 17 39 39 H 1.09002 * 109.68152 * 189.74439 * 22 20 19 40 40 H 1.09003 * 109.68473 * 310.29416 * 22 20 19 41 41 H 1.09001 * 109.27309 * 75.85597 * 23 16 15 42 42 H 1.09004 * 109.20923 * 316.43080 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8774 -1.6727 7 7 3.5550 3.6171 -0.6732 8 14 3.4375 3.4171 -3.4340 9 1 2.1397 3.5955 -4.1332 10 1 4.1812 4.7025 -3.4340 11 1 4.2392 2.3819 -4.1347 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6479 -4.9049 -0.1037 17 6 1.0017 -5.0318 -1.4018 18 6 0.5927 -6.4828 -1.6664 19 7 -0.7308 -6.7141 -1.0635 20 6 -0.8628 -6.7615 0.2654 21 8 -1.9526 -6.9561 0.7608 22 6 0.3507 -6.5715 1.1521 23 6 0.7936 -5.1086 1.0575 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.0318 4.4430 -0.8504 30 1 0.7584 -2.5298 -0.8903 31 1 0.7591 -2.5303 0.8897 32 1 2.9561 -3.6213 0.9232 33 1 3.0544 -3.5355 -0.8520 34 1 1.6926 -4.7066 -2.1796 35 1 0.1140 -4.3995 -1.4237 36 1 0.5412 -6.6585 -2.7409 37 1 1.3241 -7.1565 -1.2200 38 1 -1.5080 -6.8318 -1.6319 39 1 0.0926 -6.8110 2.1837 40 1 1.1575 -7.2220 0.8146 41 1 -0.0869 -4.4717 0.9724 42 1 1.3443 -4.8411 1.9593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062100460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:05 Heat of formation + Delta-G solvation = -93.478945 kcal Electronic energy + Delta-G solvation = -22782.333653 eV Core-core repulsion = 19375.186981 eV Total energy + Delta-G solvation = -3407.146672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35087 -40.62906 -38.75885 -36.63554 -35.95077 -34.74931 -33.10037 -31.77742 -29.92918 -28.55233 -27.29509 -25.71258 -25.24292 -23.92370 -21.57085 -20.77505 -19.93011 -18.71508 -18.37733 -17.99180 -17.67938 -17.08925 -16.82481 -16.31381 -16.11624 -16.01698 -15.53119 -14.89550 -14.87726 -14.65614 -14.07122 -13.95527 -13.75925 -13.48230 -13.38873 -13.33164 -13.12974 -12.98220 -12.82900 -12.69249 -12.51089 -12.29910 -12.20477 -12.18052 -11.79830 -11.71333 -10.86758 -10.65534 -10.63288 -10.15015 -9.44337 -9.25685 -8.23483 -6.39114 1.36402 1.40627 1.48111 1.60649 1.82163 2.29649 2.39227 2.43669 2.80897 3.05965 3.54801 3.78175 3.85560 3.97554 4.14692 4.18185 4.21929 4.31621 4.36193 4.40848 4.50064 4.55438 4.64772 4.83248 4.85692 4.89593 4.92132 4.98256 5.02780 5.12201 5.20953 5.21291 5.53726 5.81541 5.84878 6.01147 6.04232 6.12577 6.35675 6.67579 6.77315 7.23931 7.26825 7.46833 8.83491 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029243 B = 0.003350 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.264343 B = 8356.977055 C = 8532.537712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.497 3.503 13 O -0.594 6.594 14 C -0.157 4.157 15 C 0.090 3.910 16 N -0.552 5.552 17 C 0.035 3.965 18 C 0.113 3.887 19 N -0.718 5.718 20 C 0.510 3.490 21 O -0.606 6.606 22 C -0.129 4.129 23 C 0.071 3.929 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.020 0.980 28 H -0.001 1.001 29 H 0.268 0.732 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.036 0.964 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.404 0.596 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.030 0.970 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -20.925 -1.717 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.286 3.714 13 O -0.475 6.475 14 C -0.198 4.198 15 C -0.039 4.039 16 N -0.275 5.275 17 C -0.093 4.093 18 C -0.011 4.011 19 N -0.369 5.369 20 C 0.298 3.702 21 O -0.488 6.488 22 C -0.170 4.170 23 C -0.057 4.057 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.038 0.962 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.240 0.760 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.048 0.952 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.581 -21.186 -1.291 22.539 hybrid contribution -0.546 1.570 -0.863 1.873 sum -8.127 -19.616 -2.154 21.342 Atomic orbital electron populations 1.21869 0.78207 1.03720 1.02336 1.48235 1.08227 1.06677 1.71308 1.18744 0.91061 0.80444 0.96066 1.21674 1.36989 1.06680 0.92992 0.92778 1.25893 0.94841 0.96387 1.02119 1.70047 1.38809 1.14829 1.33210 0.85448 0.78838 0.77420 0.78992 1.18514 1.20384 1.20043 1.21283 0.87835 0.86438 0.75850 1.90642 1.16398 1.88147 1.52344 1.22322 1.00561 0.91784 1.05151 1.21774 0.94303 0.84087 1.03715 1.59819 1.32493 1.32814 1.02401 1.22441 0.98472 0.97588 0.90828 1.22066 0.82974 0.95309 1.00728 1.46150 1.12591 1.71737 1.06421 1.21194 0.90626 0.74306 0.84032 1.90730 1.30478 1.52107 1.75461 1.22066 0.95771 0.98642 1.00497 1.21674 0.95464 0.94407 0.94146 0.91419 0.91634 0.89267 0.96189 0.98330 0.92352 0.87886 0.87630 0.90568 0.90804 0.88463 0.94582 0.85868 0.88542 0.75952 0.87578 0.86402 0.95192 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.41 10.24 127.77 1.31 3.72 16 2 N -0.61 -25.72 2.86 -851.13 -2.43 -28.15 16 3 C 0.26 13.99 5.16 85.64 0.44 14.43 16 4 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -56.31 13.29 21.44 0.28 -56.02 16 8 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.50 19.78 7.67 87.66 0.67 20.45 16 13 O -0.59 -29.60 15.52 -3.04 -0.05 -29.64 16 14 C -0.16 -3.94 3.73 29.85 0.11 -3.83 16 15 C 0.09 2.06 4.53 86.30 0.39 2.45 16 16 N -0.55 -9.03 4.34 -902.82 -3.91 -12.95 16 17 C 0.04 0.46 4.74 86.58 0.41 0.87 16 18 C 0.11 0.95 6.50 86.26 0.56 1.51 16 19 N -0.72 -9.37 5.31 -461.93 -2.45 -11.82 16 20 C 0.51 9.89 7.10 88.09 0.63 10.51 16 21 O -0.61 -17.57 17.93 -3.03 -0.05 -17.63 16 22 C -0.13 -1.86 5.62 30.15 0.17 -1.69 16 23 C 0.07 1.11 4.55 86.60 0.39 1.51 16 24 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 26 H 0.09 2.02 6.44 -2.39 -0.02 2.01 16 27 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 28 H 0.00 -0.09 7.42 -2.38 -0.02 -0.11 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.10 2.26 6.03 -2.39 -0.01 2.24 16 31 H 0.11 2.26 7.03 -2.39 -0.02 2.24 16 32 H 0.08 1.91 7.99 -2.39 -0.02 1.89 16 33 H 0.07 1.95 7.73 -2.39 -0.02 1.93 16 34 H 0.10 1.23 7.79 -2.39 -0.02 1.21 16 35 H 0.04 0.54 7.11 -2.38 -0.02 0.52 16 36 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.10 0.74 7.03 -2.39 -0.02 0.73 16 38 H 0.40 4.63 8.92 -92.70 -0.83 3.80 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.12 1.31 7.07 -2.39 -0.02 1.29 16 41 H 0.03 0.53 7.06 -2.39 -0.02 0.51 16 42 H 0.10 1.42 7.86 -2.39 -0.02 1.40 16 Total: -1.00 -79.66 336.97 -0.60 -80.26 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.20 Total: 9.81 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 5.79 Total: 19.67 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -8.51 Total: -108.94 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.10 Total: -47.27 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -79.66 -0.60 -80.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062100460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.215 kcal (2) G-P(sol) polarization free energy of solvation -79.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds