Wall clock time and date at job start Tue Mar 31 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21282 * 119.99865 * 2 1 4 4 N 1.34774 * 120.00164 * 180.02562 * 2 1 3 5 5 C 1.46971 * 120.59221 * 359.71790 * 4 2 1 6 6 C 1.53813 * 108.39664 * 124.75959 * 5 4 2 7 7 N 1.46957 * 108.58439 * 49.63470 * 6 5 4 8 8 C 1.34773 * 120.59645 * 124.62147 * 7 6 5 9 9 O 1.21284 * 120.00095 * 180.02562 * 8 7 6 10 10 C 1.50700 * 120.00001 * 0.02826 * 8 7 6 11 11 N 1.46896 * 109.47568 * 179.97438 * 10 8 7 12 12 C 1.46901 * 111.00036 * 293.95508 * 11 10 8 13 13 C 1.46891 * 111.00389 * 170.00029 * 11 10 8 14 14 C 1.50704 * 109.47666 * 190.00212 * 13 11 10 15 15 H 1.08005 * 119.99394 * 359.97438 * 14 13 11 16 16 C 1.37869 * 120.00578 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99628 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00230 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46949 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47154 * 119.99960 * 18 16 14 21 21 H 1.48499 * 109.47284 * 240.00008 * 18 16 14 22 22 C 1.46969 * 118.81130 * 304.65093 * 7 6 5 23 23 C 1.46957 * 120.59743 * 179.97438 * 4 2 1 24 24 H 1.09001 * 109.46953 * 239.99409 * 1 2 3 25 25 H 1.09000 * 109.47318 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 119.99637 * 1 2 3 27 27 H 1.08992 * 109.61065 * 244.53991 * 5 4 2 28 28 H 1.08997 * 109.60739 * 5.05539 * 5 4 2 29 29 H 1.09007 * 109.73747 * 289.84402 * 6 5 4 30 30 H 1.09001 * 109.67588 * 169.39209 * 6 5 4 31 31 H 1.09001 * 109.46824 * 300.00028 * 10 8 7 32 32 H 1.09003 * 109.47285 * 59.99550 * 10 8 7 33 33 H 1.09007 * 109.47102 * 59.99636 * 12 11 10 34 34 H 1.09004 * 109.47112 * 179.97438 * 12 11 10 35 35 H 1.08993 * 109.47328 * 299.99679 * 12 11 10 36 36 H 1.09001 * 109.47080 * 309.99959 * 13 11 10 37 37 H 1.09000 * 109.47443 * 70.00004 * 13 11 10 38 38 H 0.97000 * 119.99331 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.61010 * 295.47663 * 22 7 6 40 40 H 1.09005 * 109.60930 * 174.96973 * 22 7 6 41 41 H 1.09004 * 109.60831 * 354.94874 * 23 4 2 42 42 H 1.08995 * 109.61592 * 115.28591 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4594 -2.4475 0.0051 6 6 1.9408 -3.2814 -1.1943 7 7 3.4103 -3.2966 -1.1945 8 6 4.0842 -4.4637 -1.1941 9 8 5.2971 -4.4637 -1.1937 10 6 3.3308 -5.7689 -1.1941 11 7 4.2853 -6.8854 -1.1942 12 6 5.0506 -6.9237 -2.4475 13 6 3.6010 -8.1632 -0.9561 14 6 4.6237 -9.2444 -0.7188 15 1 5.6768 -9.0061 -0.7430 16 6 4.2150 -10.5376 -0.4709 17 7 2.9325 -10.8276 -0.4410 18 14 5.4827 -11.8778 -0.1776 19 1 6.8465 -11.2966 -0.2641 20 1 5.2791 -12.4651 1.1711 21 1 5.3304 -12.9372 -1.2070 22 6 4.1319 -2.0163 -1.1944 23 6 3.6505 -1.1824 -0.0011 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.6682 -2.9810 0.9323 28 1 0.3884 -2.2641 -0.0811 29 1 1.5795 -2.8358 -2.1212 30 1 1.5644 -4.3006 -1.1075 31 1 2.7039 -5.8264 -0.3042 32 1 2.7043 -5.8268 -2.0842 33 1 5.6032 -5.9914 -2.5645 34 1 5.7500 -7.7594 -2.4209 35 1 4.3668 -7.0485 -3.2871 36 1 2.9577 -8.0732 -0.0807 37 1 2.9966 -8.4194 -1.8263 38 1 2.6450 -11.7375 -0.2670 39 1 3.9267 -1.4806 -2.1213 40 1 5.2026 -2.1998 -1.1045 41 1 4.0268 -0.1634 -0.0914 42 1 4.0121 -1.6250 0.9270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:58 Heat of formation + Delta-G solvation = -46.737000 kcal Electronic energy + Delta-G solvation = -22764.606108 eV Core-core repulsion = 19359.486319 eV Total energy + Delta-G solvation = -3405.119789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67815 -39.46516 -37.24748 -35.89424 -34.18559 -32.61981 -32.19224 -30.02169 -28.79225 -27.34212 -26.72888 -24.44066 -23.87577 -22.66580 -20.85530 -19.96571 -18.55261 -17.52955 -16.60798 -16.43787 -16.24745 -15.89481 -15.74500 -15.59624 -14.68784 -14.35089 -14.05216 -14.01854 -13.88460 -13.69945 -13.13157 -13.07147 -12.61678 -12.50542 -12.42867 -11.96810 -11.86578 -11.72317 -11.56083 -11.46271 -11.07221 -10.85322 -10.68577 -10.54915 -10.14567 -9.99291 -9.53682 -9.43164 -9.10198 -8.51466 -8.45913 -7.27556 -6.05776 -4.06122 2.28963 2.49866 2.84387 3.00320 3.30810 3.38259 3.44758 4.17282 4.38141 4.43763 4.47364 4.77033 4.79603 4.83037 4.91125 4.95449 5.02788 5.07824 5.17331 5.30874 5.33267 5.43879 5.49718 5.54495 5.64855 5.69777 5.71487 6.10204 6.25131 6.34476 6.43631 6.87214 7.01304 7.17906 7.26007 7.35015 7.77770 7.81956 8.00873 8.14527 8.37985 8.51217 9.02295 9.58304 11.05369 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.003198 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.511323 B = 8754.460430 C = 9198.700256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.614 5.614 5 C 0.090 3.910 6 C 0.093 3.907 7 N -0.624 5.624 8 C 0.519 3.481 9 O -0.513 6.513 10 C 0.039 3.961 11 N -0.524 5.524 12 C 0.033 3.967 13 C 0.193 3.807 14 C -0.504 4.504 15 H 0.066 0.934 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.101 3.899 23 C 0.097 3.903 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.005 0.995 36 H 0.030 0.970 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 18.743 -1.020 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.348 5.348 5 C -0.033 4.033 6 C -0.031 4.031 7 N -0.362 5.362 8 C 0.307 3.693 9 O -0.387 6.387 10 C -0.092 4.092 11 N -0.249 5.249 12 C -0.115 4.115 13 C 0.068 3.932 14 C -0.543 4.543 15 H 0.084 0.916 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.023 4.023 23 C -0.026 4.026 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.023 0.977 36 H 0.048 0.952 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.765 19.193 -0.609 20.359 hybrid contribution -0.250 -1.065 -0.458 1.186 sum -7.016 18.127 -1.066 19.467 Atomic orbital electron populations 1.21952 0.91631 1.05534 1.04279 1.20868 0.90720 0.82914 0.75307 1.90715 1.70801 1.31015 1.50112 1.48128 1.07075 1.06058 1.73582 1.22326 0.97273 0.84183 0.99567 1.22183 0.80667 1.02054 0.98190 1.48155 1.06295 1.05885 1.75828 1.21085 0.88365 0.84904 0.74905 1.90649 1.13925 1.86570 1.47522 1.21973 0.95038 0.90219 1.02014 1.61860 1.24718 1.03691 1.34610 1.22361 0.97874 1.02586 0.88676 1.19791 0.93923 0.83735 0.95708 1.21196 0.93593 0.92022 1.47491 0.91623 1.24978 0.95407 0.98705 0.95549 1.69965 1.13992 1.19848 1.50247 0.86422 0.81720 0.81495 0.77711 1.19573 1.20991 1.21116 1.21877 0.99051 0.83646 0.97691 1.22018 0.79461 1.02222 0.98933 0.89228 0.88981 0.89211 0.90125 0.88253 0.90878 0.87945 0.88520 0.93117 0.91795 0.90661 0.97694 0.95182 0.98982 0.92989 0.91436 0.87690 0.87990 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 8.66 36.01 0.31 -0.62 16 2 C 0.51 4.99 7.81 -10.98 -0.09 4.90 16 3 O -0.55 -7.67 16.49 5.56 0.09 -7.58 16 4 N -0.61 -5.47 2.94 -172.24 -0.51 -5.98 16 5 C 0.09 0.59 6.54 -3.36 -0.02 0.57 16 6 C 0.09 0.74 6.52 -3.37 -0.02 0.72 16 7 N -0.62 -7.33 2.95 -172.24 -0.51 -7.84 16 8 C 0.52 8.27 7.42 -10.99 -0.08 8.19 16 9 O -0.51 -10.13 13.72 5.55 0.08 -10.05 16 10 C 0.04 0.66 3.79 -4.98 -0.02 0.64 16 11 N -0.52 -11.55 4.49 -245.83 -1.10 -12.65 16 12 C 0.03 0.70 9.03 60.07 0.54 1.24 16 13 C 0.19 4.93 4.72 -4.98 -0.02 4.90 16 14 C -0.50 -14.19 8.46 -34.44 -0.29 -14.48 16 15 H 0.07 1.87 7.12 -52.48 -0.37 1.50 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.10 1.09 6.59 -3.61 -0.02 1.07 16 23 C 0.10 0.97 6.59 -3.62 -0.02 0.94 16 24 H 0.09 0.33 7.90 -51.93 -0.41 -0.08 16 25 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.09 0.31 7.73 -51.93 -0.40 -0.09 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.35 5.91 -51.93 -0.31 0.05 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.10 0.75 5.91 -51.93 -0.31 0.44 16 31 H 0.10 1.47 7.51 -51.93 -0.39 1.08 16 32 H 0.05 0.77 7.89 -51.93 -0.41 0.36 16 33 H 0.06 1.30 5.88 -51.92 -0.31 0.99 16 34 H 0.07 1.68 6.76 -51.93 -0.35 1.33 16 35 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.03 0.80 7.93 -51.93 -0.41 0.38 16 37 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.28 6.99 -51.93 -0.36 0.92 16 41 H 0.10 1.07 6.99 -51.93 -0.36 0.71 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -35.39 336.11 -7.49 -42.88 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.49 Total: -4.44 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 0.16 Total: 9.50 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -1.38 Total: -52.00 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.39 -7.49 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.859 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds