Wall clock time and date at job start Tue Mar 31 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21282 * 119.99865 * 2 1 4 4 N 1.34774 * 120.00164 * 180.02562 * 2 1 3 5 5 C 1.46971 * 120.59221 * 359.71790 * 4 2 1 6 6 C 1.53813 * 108.39664 * 124.75959 * 5 4 2 7 7 N 1.46957 * 108.58439 * 49.63470 * 6 5 4 8 8 C 1.34773 * 120.59645 * 124.62147 * 7 6 5 9 9 O 1.21284 * 120.00095 * 180.02562 * 8 7 6 10 10 C 1.50700 * 120.00001 * 0.02826 * 8 7 6 11 11 N 1.46896 * 109.47568 * 179.97438 * 10 8 7 12 12 C 1.46901 * 111.00036 * 293.95508 * 11 10 8 13 13 C 1.46891 * 111.00389 * 170.00029 * 11 10 8 14 14 C 1.50704 * 109.47666 * 190.00212 * 13 11 10 15 15 H 1.08005 * 119.99394 * 359.97438 * 14 13 11 16 16 C 1.37869 * 120.00578 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99628 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00230 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46949 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47154 * 119.99960 * 18 16 14 21 21 H 1.48499 * 109.47284 * 240.00008 * 18 16 14 22 22 C 1.46969 * 118.81130 * 304.65093 * 7 6 5 23 23 C 1.46957 * 120.59743 * 179.97438 * 4 2 1 24 24 H 1.09001 * 109.46953 * 239.99409 * 1 2 3 25 25 H 1.09000 * 109.47318 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 119.99637 * 1 2 3 27 27 H 1.08992 * 109.61065 * 244.53991 * 5 4 2 28 28 H 1.08997 * 109.60739 * 5.05539 * 5 4 2 29 29 H 1.09007 * 109.73747 * 289.84402 * 6 5 4 30 30 H 1.09001 * 109.67588 * 169.39209 * 6 5 4 31 31 H 1.09001 * 109.46824 * 300.00028 * 10 8 7 32 32 H 1.09003 * 109.47285 * 59.99550 * 10 8 7 33 33 H 1.09007 * 109.47102 * 59.99636 * 12 11 10 34 34 H 1.09004 * 109.47112 * 179.97438 * 12 11 10 35 35 H 1.08993 * 109.47328 * 299.99679 * 12 11 10 36 36 H 1.09001 * 109.47080 * 309.99959 * 13 11 10 37 37 H 1.09000 * 109.47443 * 70.00004 * 13 11 10 38 38 H 0.97000 * 119.99331 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.61010 * 295.47663 * 22 7 6 40 40 H 1.09005 * 109.60930 * 174.96973 * 22 7 6 41 41 H 1.09004 * 109.60831 * 354.94874 * 23 4 2 42 42 H 1.08995 * 109.61592 * 115.28591 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4594 -2.4475 0.0051 6 6 1.9408 -3.2814 -1.1943 7 7 3.4103 -3.2966 -1.1945 8 6 4.0842 -4.4637 -1.1941 9 8 5.2971 -4.4637 -1.1937 10 6 3.3308 -5.7689 -1.1941 11 7 4.2853 -6.8854 -1.1942 12 6 5.0506 -6.9237 -2.4475 13 6 3.6010 -8.1632 -0.9561 14 6 4.6237 -9.2444 -0.7188 15 1 5.6768 -9.0061 -0.7430 16 6 4.2150 -10.5376 -0.4709 17 7 2.9325 -10.8276 -0.4410 18 14 5.4827 -11.8778 -0.1776 19 1 6.8465 -11.2966 -0.2641 20 1 5.2791 -12.4651 1.1711 21 1 5.3304 -12.9372 -1.2070 22 6 4.1319 -2.0163 -1.1944 23 6 3.6505 -1.1824 -0.0011 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 1.6682 -2.9810 0.9323 28 1 0.3884 -2.2641 -0.0811 29 1 1.5795 -2.8358 -2.1212 30 1 1.5644 -4.3006 -1.1075 31 1 2.7039 -5.8264 -0.3042 32 1 2.7043 -5.8268 -2.0842 33 1 5.6032 -5.9914 -2.5645 34 1 5.7500 -7.7594 -2.4209 35 1 4.3668 -7.0485 -3.2871 36 1 2.9577 -8.0732 -0.0807 37 1 2.9966 -8.4194 -1.8263 38 1 2.6450 -11.7375 -0.2670 39 1 3.9267 -1.4806 -2.1213 40 1 5.2026 -2.1998 -1.1045 41 1 4.0268 -0.1634 -0.0914 42 1 4.0121 -1.6250 0.9270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:57 Heat of formation + Delta-G solvation = -72.992067 kcal Electronic energy + Delta-G solvation = -22765.744614 eV Core-core repulsion = 19359.486319 eV Total energy + Delta-G solvation = -3406.258294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58889 -40.51931 -38.34192 -37.45326 -35.13947 -34.63302 -33.04771 -30.60441 -30.19931 -28.96533 -27.95547 -26.06950 -24.78198 -23.71280 -22.41816 -21.01738 -19.49873 -18.64763 -18.29543 -17.46832 -17.24012 -16.89560 -16.73280 -16.55218 -16.52173 -15.76104 -15.43684 -15.23849 -14.81829 -14.68323 -14.30472 -14.24675 -13.69747 -13.63017 -13.27593 -13.17740 -12.98243 -12.80167 -12.72675 -12.60198 -12.57607 -12.51565 -12.35927 -12.26078 -11.95980 -11.40228 -10.92616 -10.68697 -10.59620 -10.33272 -9.40507 -8.99774 -8.20270 -6.28352 1.41131 1.42538 1.53276 1.55713 1.65817 1.68022 2.12984 2.42210 3.12657 3.31420 3.53384 3.61222 3.77359 3.99958 4.11497 4.19713 4.24892 4.34118 4.38042 4.42965 4.53021 4.58232 4.64500 4.64698 4.68383 4.69341 4.76984 4.95600 5.11578 5.13032 5.17371 5.29327 5.37101 5.46023 5.65840 6.02614 6.23077 6.28630 6.38678 6.61509 6.86315 7.10630 7.20034 7.40837 8.90576 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.003198 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.511323 B = 8754.460430 C = 9198.700256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.506 3.494 3 O -0.601 6.601 4 N -0.614 5.614 5 C 0.092 3.908 6 C 0.085 3.915 7 N -0.614 5.614 8 C 0.521 3.479 9 O -0.561 6.561 10 C 0.040 3.960 11 N -0.544 5.544 12 C 0.043 3.957 13 C 0.210 3.790 14 C -0.526 4.526 15 H 0.054 0.946 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.106 3.894 23 C 0.102 3.898 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.015 0.985 36 H 0.017 0.983 37 H -0.026 1.026 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 18.879 -1.063 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.482 6.482 4 N -0.347 5.347 5 C -0.031 4.031 6 C -0.038 4.038 7 N -0.349 5.349 8 C 0.310 3.690 9 O -0.439 6.439 10 C -0.091 4.091 11 N -0.269 5.269 12 C -0.105 4.105 13 C 0.084 3.916 14 C -0.564 4.564 15 H 0.072 0.928 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.018 4.018 23 C -0.022 4.022 24 H 0.131 0.869 25 H 0.107 0.893 26 H 0.135 0.865 27 H 0.098 0.902 28 H 0.158 0.842 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.035 0.965 37 H -0.008 1.008 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.596 19.347 -0.653 21.181 hybrid contribution 0.242 -1.026 -0.452 1.147 sum -8.355 18.322 -1.106 20.167 Atomic orbital electron populations 1.21994 0.87793 1.06231 1.06612 1.21725 0.92499 0.82089 0.73913 1.90696 1.72153 1.32842 1.52520 1.48249 1.06480 1.07038 1.72921 1.22529 0.99201 0.82608 0.98764 1.22550 0.77894 1.03389 0.99967 1.48134 1.08110 1.04827 1.73873 1.20879 0.87691 0.85697 0.74774 1.90633 1.15765 1.87279 1.50181 1.22042 0.94464 0.88811 1.03832 1.61679 1.26090 1.03662 1.35449 1.22222 0.97612 1.01913 0.88735 1.19433 0.92929 0.85037 0.94169 1.21469 0.93618 0.93403 1.47945 0.92794 1.25775 0.97356 1.00856 0.95093 1.70049 1.15559 1.20640 1.50675 0.85417 0.79131 0.78626 0.77952 1.19519 1.20175 1.20204 1.21853 0.98100 0.83239 0.98561 1.21825 0.80832 1.01358 0.98163 0.86870 0.89321 0.86512 0.90210 0.84195 0.88821 0.86867 0.86892 0.90828 0.91166 0.92879 0.96684 0.96493 1.00844 0.92571 0.90362 0.89514 0.88847 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 8.66 71.24 0.62 -0.57 16 2 C 0.51 8.85 7.81 87.66 0.68 9.53 16 3 O -0.60 -16.60 16.49 -3.04 -0.05 -16.65 16 4 N -0.61 -9.60 2.94 -817.24 -2.40 -12.01 16 5 C 0.09 0.86 6.54 86.56 0.57 1.43 16 6 C 0.08 1.06 6.52 86.57 0.56 1.62 16 7 N -0.61 -13.40 2.95 -817.22 -2.41 -15.81 16 8 C 0.52 16.16 7.42 87.66 0.65 16.81 16 9 O -0.56 -22.36 13.72 -3.04 -0.04 -22.40 16 10 C 0.04 1.27 3.79 85.56 0.32 1.59 16 11 N -0.54 -24.00 4.49 -931.66 -4.18 -28.19 16 12 C 0.04 1.83 9.03 127.69 1.15 2.99 16 13 C 0.21 10.82 4.72 85.56 0.40 11.22 16 14 C -0.53 -29.95 8.46 25.60 0.22 -29.74 16 15 H 0.05 3.13 7.12 -2.91 -0.02 3.11 16 16 C 0.01 0.43 5.46 84.65 0.46 0.89 16 17 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 18 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.11 2.22 6.59 86.40 0.57 2.79 16 23 C 0.10 1.99 6.59 86.40 0.57 2.56 16 24 H 0.11 0.31 7.90 -2.39 -0.02 0.29 16 25 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 26 H 0.12 0.23 7.73 -2.39 -0.02 0.21 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.14 0.23 5.91 -2.39 -0.01 0.22 16 29 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.11 1.23 5.91 -2.39 -0.01 1.22 16 31 H 0.11 3.23 7.51 -2.39 -0.02 3.21 16 32 H 0.07 2.06 7.89 -2.39 -0.02 2.04 16 33 H 0.07 2.88 5.88 -2.38 -0.01 2.86 16 34 H 0.05 2.43 6.76 -2.38 -0.02 2.41 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.02 0.91 7.93 -2.39 -0.02 0.89 16 37 H -0.03 -1.42 8.12 -2.39 -0.02 -1.44 16 38 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 2.18 6.99 -2.38 -0.02 2.16 16 41 H 0.09 2.01 6.99 -2.38 -0.02 1.99 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.45 336.11 1.01 -77.44 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.01 Total: 3.92 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.78 Total: 21.13 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -8.71 Total: -109.80 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.09 Total: -39.06 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -78.45 1.01 -77.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.447 kcal (2) G-P(sol) polarization free energy of solvation -78.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds