Wall clock time and date at job start Tue Mar 31 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00307 * 2 1 4 4 C 1.50694 * 109.47466 * 66.04515 * 3 2 1 5 5 H 1.08007 * 119.99600 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.00520 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00060 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00580 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47164 * 59.99874 * 8 6 4 10 10 H 1.48493 * 109.47650 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46935 * 300.00343 * 8 6 4 12 12 C 1.46902 * 110.99609 * 236.04646 * 2 1 3 13 13 C 1.50702 * 109.47027 * 293.95228 * 12 2 1 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 2 16 16 C 1.46923 * 120.63273 * 0.28271 * 15 13 12 17 17 C 1.53192 * 108.77564 * 233.58447 * 16 15 13 18 18 C 1.53043 * 109.31235 * 305.36054 * 17 16 15 19 19 C 1.53036 * 109.53620 * 61.36579 * 18 17 16 20 20 H 1.08994 * 109.49976 * 58.61995 * 19 18 17 21 21 C 1.50705 * 109.49780 * 178.68453 * 19 18 17 22 22 N 1.34773 * 119.99870 * 179.97438 * 21 19 18 23 23 O 1.21271 * 119.99838 * 0.02562 * 21 19 18 24 24 C 1.46929 * 120.63092 * 179.97438 * 15 13 12 25 25 H 1.09000 * 109.47177 * 183.95478 * 1 2 3 26 26 H 1.09001 * 109.46926 * 303.95721 * 1 2 3 27 27 H 1.09005 * 109.47416 * 63.95111 * 1 2 3 28 28 H 1.08998 * 109.47081 * 186.05464 * 3 2 1 29 29 H 1.09003 * 109.47009 * 306.04522 * 3 2 1 30 30 H 0.96991 * 120.00344 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47131 * 173.95472 * 12 2 1 32 32 H 1.08994 * 109.47471 * 53.95221 * 12 2 1 33 33 H 1.09003 * 109.58523 * 353.36859 * 16 15 13 34 34 H 1.08996 * 109.59476 * 113.79560 * 16 15 13 35 35 H 1.08998 * 109.49840 * 65.31182 * 17 16 15 36 36 H 1.09001 * 109.49830 * 185.37680 * 17 16 15 37 37 H 1.08996 * 109.46188 * 181.38449 * 18 17 16 38 38 H 1.09005 * 109.46046 * 301.36136 * 18 17 16 39 39 H 0.97003 * 120.00246 * 359.97438 * 22 21 19 40 40 H 0.97005 * 119.99798 * 180.02562 * 22 21 19 41 41 H 1.09007 * 109.58815 * 246.20444 * 24 15 13 42 42 H 1.08999 * 109.58776 * 6.63087 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0487 6 6 2.0278 3.3490 1.5288 7 7 2.7130 4.0015 0.6153 8 14 1.5841 4.1865 3.1385 9 1 2.1758 3.4287 4.2703 10 1 2.1162 5.5728 3.1385 11 1 0.1069 4.2238 3.2864 12 6 1.9953 -0.7660 -1.1376 13 6 1.6368 -2.2204 -0.9728 14 8 1.0046 -2.5832 -0.0034 15 7 2.0134 -3.1172 -1.9058 16 6 2.7792 -2.6931 -3.0858 17 6 2.0541 -3.1788 -4.3448 18 6 1.8318 -4.6900 -4.2497 19 6 0.9540 -5.0027 -3.0358 20 1 0.0017 -4.4813 -3.1315 21 6 0.7090 -6.4879 -2.9615 22 7 -0.0432 -6.9978 -1.9662 23 8 1.1894 -7.2242 -3.7967 24 6 1.6718 -4.5387 -1.7588 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3634 0.4513 -0.9233 28 1 3.0797 1.3443 -0.1084 29 1 1.5612 1.9273 -0.8309 30 1 2.9876 4.9175 0.7773 31 1 3.0796 -0.6612 -1.1757 32 1 1.5610 -0.3873 -2.0628 33 1 2.8520 -1.6057 -3.1026 34 1 3.7781 -3.1277 -3.0489 35 1 1.0916 -2.6740 -4.4279 36 1 2.6597 -2.9542 -5.2229 37 1 1.3380 -5.0421 -5.1553 38 1 2.7932 -5.1924 -4.1415 39 1 -0.4266 -6.4089 -1.2975 40 1 -0.2006 -7.9537 -1.9181 41 1 2.5825 -5.1205 -1.6160 42 1 1.0137 -4.6694 -0.8999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:51 Heat of formation + Delta-G solvation = -70.895557 kcal Electronic energy + Delta-G solvation = -22785.475690 eV Core-core repulsion = 19379.308308 eV Total energy + Delta-G solvation = -3406.167383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65279 -39.45693 -37.29049 -35.82932 -34.07928 -33.02753 -32.50504 -31.43321 -28.42898 -26.97251 -25.42787 -24.78393 -23.60630 -21.93482 -20.73920 -20.08787 -18.92546 -17.76190 -17.07848 -16.75659 -16.35215 -16.01330 -15.48331 -15.15489 -14.69405 -14.36210 -14.23362 -14.12655 -13.90434 -13.66376 -13.42334 -12.97141 -12.82234 -12.37269 -11.88040 -11.79005 -11.47866 -11.26332 -11.19855 -11.03537 -10.92250 -10.83664 -10.68961 -10.52623 -10.24543 -10.01272 -9.97119 -9.49456 -9.11304 -8.69228 -8.43641 -7.25191 -6.03593 -4.04324 2.26754 2.85897 2.88895 3.25565 3.34984 3.38276 3.42409 4.29062 4.40857 4.44632 4.53988 4.72943 4.82037 4.89619 4.97109 5.05835 5.20980 5.32570 5.35432 5.50126 5.51822 5.61117 5.70430 5.72123 5.76541 5.83801 6.03910 6.26656 6.35892 6.43385 6.47068 6.87417 6.98309 7.20478 7.28324 7.38516 7.79056 7.92824 8.03290 8.16791 8.39759 8.53288 9.03354 9.59838 11.07479 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.037255 B = 0.003237 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.393192 B = 8646.811900 C = 9170.517855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.524 5.524 3 C 0.194 3.806 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.901 5.901 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.039 3.961 13 C 0.520 3.480 14 O -0.518 6.518 15 N -0.621 5.621 16 C 0.104 3.896 17 C -0.136 4.136 18 C -0.099 4.099 19 C -0.125 4.125 20 H 0.103 0.897 21 C 0.527 3.473 22 N -0.855 5.855 23 O -0.543 6.543 24 C 0.124 3.876 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.004 0.996 28 H 0.030 0.970 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.405 0.595 40 H 0.401 0.599 41 H 0.070 0.930 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -17.653 -10.141 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.249 5.249 3 C 0.069 3.931 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.092 4.092 13 C 0.309 3.691 14 O -0.392 6.392 15 N -0.357 5.357 16 C -0.019 4.019 17 C -0.174 4.174 18 C -0.137 4.137 19 C -0.147 4.147 20 H 0.121 0.879 21 C 0.311 3.689 22 N -0.418 5.418 23 O -0.419 6.419 24 C 0.001 3.999 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.023 0.977 28 H 0.048 0.952 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.234 0.766 40 H 0.232 0.768 41 H 0.088 0.912 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.530 -18.170 -9.806 20.802 hybrid contribution -0.679 0.837 0.329 1.127 sum -3.209 -17.333 -9.477 20.013 Atomic orbital electron populations 1.22355 0.88063 1.01069 0.99971 1.61861 1.07824 1.17330 1.37852 1.19780 0.95335 0.81049 0.96947 1.21116 1.34846 0.96882 1.01633 0.91735 1.24976 0.95264 0.97284 0.97067 1.69941 1.38420 1.11534 1.34154 0.86530 0.78735 0.78230 0.83752 1.20107 1.21378 1.20253 1.21979 1.01935 0.90197 0.95134 1.21064 0.78292 0.88254 0.81492 1.90630 1.38720 1.80241 1.29577 1.48165 1.56958 1.07176 1.23447 1.21804 0.94697 1.01212 0.84169 1.21961 1.01738 0.95779 0.97931 1.21335 1.00089 0.95714 0.96546 1.21855 1.02074 0.92253 0.98560 0.87914 1.20514 0.77235 0.90626 0.80558 1.43951 1.54774 1.12559 1.30543 1.90740 1.50082 1.61328 1.39796 1.21458 1.00067 0.82146 0.96252 0.91814 0.90727 0.97744 0.95178 0.98996 0.92864 0.88478 0.93037 0.89000 0.91098 0.91226 0.90026 0.90871 0.90889 0.76644 0.76838 0.91214 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.03 60.06 0.54 1.24 16 2 N -0.52 -11.61 4.49 -245.83 -1.10 -12.71 16 3 C 0.19 5.00 4.72 -4.98 -0.02 4.97 16 4 C -0.51 -14.32 8.46 -34.45 -0.29 -14.61 16 5 H 0.06 1.83 7.12 -52.48 -0.37 1.46 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.04 0.67 3.79 -4.97 -0.02 0.65 16 13 C 0.52 8.27 7.42 -10.98 -0.08 8.19 16 14 O -0.52 -9.88 13.72 5.55 0.08 -9.81 16 15 N -0.62 -7.30 2.97 -172.47 -0.51 -7.81 16 16 C 0.10 0.94 6.34 -3.71 -0.02 0.92 16 17 C -0.14 -1.04 6.08 -26.61 -0.16 -1.20 16 18 C -0.10 -0.84 4.46 -26.69 -0.12 -0.96 16 19 C -0.13 -1.09 2.69 -91.41 -0.25 -1.34 16 20 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 21 C 0.53 5.05 7.42 -10.98 -0.08 4.97 16 22 N -0.85 -5.50 8.78 31.22 0.27 -5.23 16 23 O -0.54 -7.23 16.82 5.56 0.09 -7.13 16 24 C 0.12 1.25 5.60 -3.46 -0.02 1.23 16 25 H 0.06 1.26 5.88 -51.93 -0.31 0.95 16 26 H 0.07 1.66 6.76 -51.93 -0.35 1.30 16 27 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 29 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.10 1.56 7.73 -51.93 -0.40 1.16 16 32 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 33 H 0.09 0.83 5.93 -51.93 -0.31 0.52 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.40 1.93 8.39 -40.82 -0.34 1.59 16 40 H 0.40 2.13 8.93 -40.82 -0.36 1.77 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.02 6.62 -51.93 -0.34 0.68 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -34.68 336.85 -7.54 -42.21 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.53 Total: -1.06 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.62 Total: 5.53 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.60 Total: -51.51 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.17 Total: -16.94 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.68 -7.54 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.682 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds