Wall clock time and date at job start Tue Mar 31 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47215 * 2 1 4 4 C 1.37095 * 119.99962 * 263.81888 * 3 2 1 5 5 H 1.08000 * 120.00233 * 145.37827 * 4 3 2 6 6 C 1.38946 * 119.99790 * 325.37502 * 4 3 2 7 7 N 1.31411 * 119.99998 * 157.01623 * 6 4 3 8 8 Si 1.86796 * 120.00301 * 337.01622 * 6 4 3 9 9 H 1.48501 * 109.47135 * 92.54341 * 8 6 4 10 10 H 1.48502 * 109.47403 * 212.54261 * 8 6 4 11 11 H 1.48498 * 109.47316 * 332.54288 * 8 6 4 12 12 C 1.34780 * 120.00117 * 83.81301 * 3 2 1 13 13 O 1.21292 * 119.99809 * 4.78579 * 12 3 2 14 14 C 1.50689 * 120.00321 * 184.78040 * 12 3 2 15 15 H 1.09006 * 109.47113 * 51.06115 * 14 12 3 16 16 C 1.53002 * 109.47408 * 291.06044 * 14 12 3 17 17 O 1.42896 * 109.47461 * 171.05791 * 14 12 3 18 18 C 1.42899 * 114.00227 * 215.67757 * 17 14 12 19 19 C 1.54241 * 108.89951 * 262.69691 * 18 17 14 20 20 C 1.50549 * 108.48405 * 159.17961 * 19 18 17 21 21 C 1.54063 * 112.41540 * 94.27215 * 20 19 18 22 22 C 1.54072 * 112.81456 * 318.27459 * 21 20 19 23 23 C 1.50475 * 112.49431 * 318.28730 * 22 21 20 24 24 C 1.45549 * 108.89202 * 139.90901 * 18 17 14 25 25 H 1.08999 * 109.47042 * 184.89477 * 1 2 3 26 26 H 1.08995 * 109.47561 * 304.90036 * 1 2 3 27 27 H 1.08999 * 109.46734 * 64.89655 * 1 2 3 28 28 H 1.08995 * 109.47487 * 239.99567 * 2 1 3 29 29 H 1.08997 * 109.46877 * 119.99542 * 2 1 3 30 30 H 0.97000 * 120.00854 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47041 * 294.23616 * 16 14 12 32 32 H 1.09004 * 109.46871 * 54.23778 * 16 14 12 33 33 H 1.09007 * 109.47136 * 174.23055 * 16 14 12 34 34 H 1.09003 * 108.87468 * 21.30490 * 18 17 14 35 35 H 1.09000 * 109.62888 * 278.98080 * 19 18 17 36 36 H 1.09007 * 109.62756 * 39.55346 * 19 18 17 37 37 H 1.08996 * 108.92502 * 333.50930 * 20 19 18 38 38 H 1.09006 * 108.91539 * 215.01666 * 20 19 18 39 39 H 1.09005 * 108.81522 * 197.41622 * 21 20 19 40 40 H 1.08999 * 108.73089 * 79.07999 * 21 20 19 41 41 H 1.08996 * 108.87332 * 197.50849 * 22 21 20 42 42 H 1.08993 * 108.87243 * 79.06679 * 22 21 20 43 43 H 1.08994 * 109.63136 * 334.44327 * 23 22 21 44 44 H 1.09005 * 109.62433 * 213.86091 * 23 22 21 45 45 H 1.08997 * 108.89759 * 303.43588 * 24 18 17 46 46 H 1.08994 * 108.89633 * 62.03636 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3674 1.9849 -1.1804 5 1 2.1899 3.0410 -1.3200 6 6 2.9495 1.2379 -2.1971 7 7 2.8766 1.6530 -3.4418 8 14 3.8359 -0.3564 -1.7948 9 1 2.8880 -1.4934 -1.9139 10 1 4.9622 -0.5496 -2.7431 11 1 4.3620 -0.2939 -0.4075 12 6 2.1244 2.0585 1.1604 13 8 1.8989 1.4984 2.2123 14 6 2.5232 3.5117 1.1510 15 1 1.8902 4.0577 0.4515 16 6 3.9858 3.6364 0.7194 17 8 2.3653 4.0575 2.4621 18 6 1.9238 5.4165 2.4767 19 6 3.1489 6.3381 2.6467 20 6 2.7822 7.7144 2.1591 21 6 2.2959 8.6309 3.2980 22 6 1.3605 7.9095 4.2873 23 6 0.3708 7.0128 3.5942 24 6 0.9524 5.5850 3.5474 25 1 -0.3633 -1.0239 0.0877 26 1 -0.3634 0.5879 0.8428 27 1 -0.3633 0.4360 -0.9306 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2832 1.1318 -4.1516 31 1 4.6271 3.1784 1.4724 32 1 4.1273 3.1297 -0.2353 33 1 4.2448 4.6899 0.6135 34 1 1.4425 5.6411 1.5248 35 1 3.4298 6.3833 3.6989 36 1 3.9818 5.9521 2.0589 37 1 1.9908 7.6265 1.4148 38 1 3.6558 8.1676 1.6905 39 1 1.7635 9.4777 2.8648 40 1 3.1636 9.0032 3.8424 41 1 0.8158 8.6558 4.8655 42 1 1.9634 7.3094 4.9687 43 1 0.1994 7.3718 2.5794 44 1 -0.5685 7.0076 4.1473 45 1 0.1373 4.8766 3.3992 46 1 1.4366 5.3712 4.5002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089960942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:21 Heat of formation + Delta-G solvation = -105.355220 kcal Electronic energy + Delta-G solvation = -24082.466570 eV Core-core repulsion = 20778.345248 eV Total energy + Delta-G solvation = -3304.121322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19981 -40.18484 -37.76575 -36.86547 -34.15104 -33.53118 -32.95055 -31.90251 -30.68365 -27.02651 -25.76192 -25.60060 -24.99180 -23.55775 -21.77401 -20.88274 -20.13176 -19.06514 -18.32099 -17.66061 -17.07212 -16.69145 -16.23341 -15.98798 -15.68767 -15.37752 -15.03541 -14.77874 -14.39678 -14.28756 -14.23877 -14.01716 -13.87466 -13.70953 -13.17951 -13.04564 -13.02737 -12.86177 -12.76607 -12.60390 -12.50338 -12.06707 -11.99813 -11.82967 -11.62651 -11.47721 -11.38547 -11.20908 -11.10579 -11.06472 -10.65236 -10.15844 -9.78138 -8.52836 -6.09096 1.16824 1.31962 1.42954 1.81777 2.14712 2.21518 2.85782 3.11664 3.67269 3.88525 3.94534 4.02868 4.05227 4.17003 4.21843 4.23969 4.29717 4.33969 4.38324 4.41512 4.45412 4.46462 4.57973 4.77696 4.78555 4.86898 4.91924 4.96329 5.01389 5.02189 5.11714 5.21188 5.22977 5.28383 5.33948 5.36219 5.36866 5.41297 5.45520 5.47801 5.59894 5.99455 6.22747 6.34981 6.93813 7.38778 7.74710 8.60493 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.004625 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.946275 B = 6052.229468 C = 6567.501741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 N -0.470 5.470 4 C -0.341 4.341 5 H 0.092 0.908 6 C 0.039 3.961 7 N -0.887 5.887 8 Si 0.916 3.084 9 H -0.256 1.256 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.469 3.531 13 O -0.610 6.610 14 C 0.100 3.900 15 H 0.080 0.920 16 C -0.157 4.157 17 O -0.383 6.383 18 C 0.088 3.912 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.104 4.104 24 C -0.122 4.122 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.281 0.719 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 10.996 8.500 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.037 4.037 3 N -0.192 5.192 4 C -0.468 4.468 5 H 0.110 0.890 6 C -0.167 4.167 7 N -0.523 5.523 8 Si 0.743 3.257 9 H -0.182 1.182 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.259 3.741 13 O -0.496 6.496 14 C 0.040 3.960 15 H 0.097 0.903 16 C -0.214 4.214 17 O -0.302 6.302 18 C 0.031 3.969 19 C -0.168 4.168 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.142 4.142 24 C -0.160 4.160 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.619 10.585 8.962 13.964 hybrid contribution 0.459 -0.943 -0.477 1.152 sum -1.160 9.642 8.485 12.897 Atomic orbital electron populations 1.21909 0.94247 1.02718 1.01500 1.21773 0.96503 0.84390 1.01003 1.43878 1.57166 1.12317 1.05836 1.18937 1.41233 0.96572 0.90034 0.89043 1.25655 0.96278 1.00395 0.94326 1.69811 1.41440 1.41363 0.99688 0.86361 0.79356 0.81519 0.78496 1.18236 1.20886 1.19898 1.20885 0.79962 0.90250 0.83017 1.90512 1.55700 1.71302 1.32050 1.21629 0.98589 0.91072 0.84751 0.90274 1.22166 0.93559 1.03216 1.02487 1.88002 1.87900 1.27912 1.26366 1.21390 0.95164 0.81084 0.99311 1.21842 0.97091 0.95283 1.02550 1.21303 1.01414 0.94231 0.98573 1.21911 0.99211 0.97884 0.96092 1.21368 0.97262 0.98882 0.98236 1.21223 0.98750 0.92300 1.01898 1.20630 0.97753 0.98611 0.98978 0.89585 0.93756 0.92525 0.91225 0.91963 0.90906 0.93117 0.90236 0.90022 0.92770 0.91048 0.91744 0.92325 0.91133 0.91180 0.91594 0.90749 0.92582 0.91280 0.90430 0.93414 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 10.19 71.98 0.73 -4.85 16 2 C 0.09 3.81 4.71 86.38 0.41 4.22 16 3 N -0.47 -22.82 2.24 -635.56 -1.43 -24.25 16 4 C -0.34 -17.17 7.20 84.04 0.61 -16.57 16 5 H 0.09 4.79 6.78 -2.91 -0.02 4.77 16 6 C 0.04 1.96 5.28 84.93 0.45 2.41 16 7 N -0.89 -46.94 13.96 21.66 0.30 -46.64 16 8 Si 0.92 40.83 25.07 68.60 1.72 42.55 16 9 H -0.26 -10.68 6.53 99.48 0.65 -10.03 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 12 C 0.47 23.03 6.99 87.65 0.61 23.64 16 13 O -0.61 -33.07 16.18 15.82 0.26 -32.81 16 14 C 0.10 4.18 2.38 29.85 0.07 4.25 16 15 H 0.08 3.21 6.38 -2.38 -0.02 3.19 16 16 C -0.16 -5.98 9.05 71.98 0.65 -5.33 16 17 O -0.38 -15.24 9.07 -130.10 -1.18 -16.42 16 18 C 0.09 2.63 2.16 28.74 0.06 2.70 16 19 C -0.13 -3.23 5.24 30.22 0.16 -3.07 16 20 C -0.12 -2.29 5.32 30.16 0.16 -2.13 16 21 C -0.11 -1.81 5.85 31.32 0.18 -1.62 16 22 C -0.12 -2.01 5.31 30.14 0.16 -1.85 16 23 C -0.10 -2.03 5.61 30.20 0.17 -1.87 16 24 C -0.12 -3.29 4.82 28.74 0.14 -3.15 16 25 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.07 3.08 3.17 -2.39 -0.01 3.07 16 29 H 0.06 2.79 7.55 -2.39 -0.02 2.77 16 30 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 3.36 5.93 -2.38 -0.01 3.34 16 33 H 0.08 2.59 6.56 -2.38 -0.02 2.57 16 34 H 0.05 1.63 6.47 -2.39 -0.02 1.61 16 35 H 0.07 1.73 6.97 -2.39 -0.02 1.71 16 36 H 0.06 1.70 6.18 -2.38 -0.01 1.69 16 37 H 0.06 1.18 6.63 -2.39 -0.02 1.17 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.03 6.62 -2.39 -0.02 1.01 16 43 H 0.07 1.32 6.98 -2.39 -0.02 1.30 16 44 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.76 7.46 -2.39 -0.02 1.74 16 Total: -1.00 -61.13 340.77 5.13 -56.00 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.90 Total: 24.79 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.56 Total: -3.22 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.12 Total: -70.89 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -0.92 Total: -49.23 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.72 Total: 42.55 kcal Total: -61.13 5.13 -56.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089960942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.357 kcal (2) G-P(sol) polarization free energy of solvation -61.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds