Wall clock time and date at job start Tue Mar 31 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47056 * 2 1 4 4 C 1.46494 * 120.00567 * 94.51313 * 3 2 1 5 5 C 1.50701 * 109.47387 * 87.14648 * 4 3 2 6 6 H 1.08001 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99373 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00264 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47041 * 89.99694 * 9 7 5 11 11 H 1.48504 * 109.47224 * 329.99939 * 9 7 5 12 12 H 1.48500 * 109.47142 * 210.00265 * 9 7 5 13 13 C 1.34778 * 119.99840 * 274.51117 * 3 2 1 14 14 O 1.21283 * 120.00213 * 4.86634 * 13 3 2 15 15 C 1.50695 * 120.00135 * 184.86762 * 13 3 2 16 16 H 1.08996 * 109.49879 * 325.96602 * 15 13 3 17 17 C 1.53046 * 109.50017 * 205.90184 * 15 13 3 18 18 C 1.53037 * 109.54215 * 178.68053 * 17 15 13 19 19 C 1.53193 * 109.31021 * 61.36555 * 18 17 15 20 20 N 1.46927 * 108.77736 * 305.36721 * 19 18 17 21 21 C 1.34778 * 120.63192 * 233.61229 * 20 19 18 22 22 N 1.34781 * 119.99754 * 5.13400 * 21 20 19 23 23 O 1.21580 * 120.00272 * 185.14182 * 21 20 19 24 24 C 1.46933 * 118.76519 * 53.58463 * 20 19 18 25 25 H 1.08995 * 109.46865 * 175.05792 * 1 2 3 26 26 H 1.08997 * 109.46841 * 295.05583 * 1 2 3 27 27 H 1.08995 * 109.47021 * 55.05700 * 1 2 3 28 28 H 1.08994 * 109.47299 * 239.99675 * 2 1 3 29 29 H 1.09006 * 109.46972 * 119.99319 * 2 1 3 30 30 H 1.09003 * 109.46834 * 327.15409 * 4 3 2 31 31 H 1.08998 * 109.47300 * 207.15377 * 4 3 2 32 32 H 0.97004 * 119.99677 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.45840 * 298.70272 * 17 15 13 34 34 H 1.09001 * 109.46014 * 58.67360 * 17 15 13 35 35 H 1.08998 * 109.49950 * 181.31363 * 18 17 15 36 36 H 1.08999 * 109.49677 * 301.38405 * 18 17 15 37 37 H 1.09002 * 109.58821 * 65.15422 * 19 18 17 38 38 H 1.09003 * 109.58902 * 185.57700 * 19 18 17 39 39 H 0.97005 * 119.99996 * 5.09539 * 22 21 20 40 40 H 0.96996 * 120.00121 * 185.10349 * 22 21 20 41 41 H 1.08998 * 109.61319 * 186.64455 * 24 20 19 42 42 H 1.09000 * 109.55892 * 66.21816 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3567 2.0386 1.2647 5 6 3.7886 1.7339 1.6220 6 1 4.3870 1.1130 0.9718 7 6 4.3348 2.2479 2.7790 8 7 5.5846 1.9823 3.0905 9 14 3.2997 3.3212 3.9040 10 1 2.6086 2.4682 4.9040 11 1 2.2911 4.0549 3.0978 12 1 4.1762 4.2940 4.6043 13 6 2.1564 2.0471 -1.1636 14 8 1.7939 1.5356 -2.2018 15 6 2.7612 3.4273 -1.1747 16 1 2.4812 3.9546 -0.2628 17 6 2.2463 4.2010 -2.3907 18 6 2.8343 5.6139 -2.3851 19 6 4.3609 5.5277 -2.4780 20 7 4.8527 4.6650 -1.3950 21 6 5.8044 5.1026 -0.5469 22 7 6.2403 6.3758 -0.6221 23 8 6.2699 4.3489 0.2858 24 6 4.2871 3.3163 -1.2532 25 1 -0.3633 -1.0238 -0.0885 26 1 -0.3633 0.4352 0.9309 27 1 -0.3633 0.5886 -0.8424 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6995 1.6706 2.0526 31 1 2.2298 3.1161 1.1594 32 1 5.9688 2.3435 3.9047 33 1 2.5474 3.6860 -3.3029 34 1 1.1587 4.2604 -2.3494 35 1 2.4488 6.1718 -3.2384 36 1 2.5536 6.1210 -1.4620 37 1 4.6450 5.1031 -3.4409 38 1 4.7902 6.5243 -2.3748 39 1 5.8184 6.9975 -1.2357 40 1 6.9760 6.6703 -0.0629 41 1 4.6671 2.8542 -0.3421 42 1 4.5656 2.7113 -2.1159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103339912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:30 Heat of formation + Delta-G solvation = -59.541286 kcal Electronic energy + Delta-G solvation = -24315.341556 eV Core-core repulsion = 20909.666532 eV Total energy + Delta-G solvation = -3405.675025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19896 -39.06460 -36.73904 -35.25351 -33.60016 -32.57998 -32.03588 -31.35231 -29.93071 -27.51441 -25.11120 -24.21844 -22.56439 -22.33571 -20.96723 -19.27252 -18.24101 -17.92063 -16.89368 -16.55177 -16.34338 -15.59227 -14.94829 -14.66224 -14.41424 -14.07023 -14.04238 -13.59005 -13.37306 -13.18577 -12.92628 -12.68269 -12.34782 -12.25748 -11.99213 -11.82499 -11.64916 -11.18961 -10.98201 -10.79815 -10.76113 -10.56302 -10.41727 -10.19952 -10.02761 -9.60530 -9.44953 -9.27426 -9.03839 -8.51853 -8.21188 -7.72045 -6.03234 -4.03984 3.02385 3.26238 3.32281 3.35351 3.41828 3.72309 3.86452 4.38095 4.40315 4.86883 5.00131 5.05757 5.26587 5.31728 5.37867 5.52585 5.58838 5.70360 5.77630 5.82098 5.85246 5.95237 5.98133 6.16183 6.23296 6.24654 6.38346 6.47706 6.57738 6.60751 6.65804 6.80931 6.93153 7.13550 7.30118 7.38889 7.57772 8.17634 8.26800 8.52811 8.90384 9.01550 9.11817 9.55493 11.09137 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.009608 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.018649 B = 2913.483706 C = 4634.394813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.587 5.587 4 C 0.208 3.792 5 C -0.545 4.545 6 H 0.080 0.920 7 C 0.090 3.910 8 N -0.871 5.871 9 Si 0.866 3.134 10 H -0.277 1.277 11 H -0.268 1.268 12 H -0.285 1.285 13 C 0.525 3.475 14 O -0.569 6.569 15 C -0.117 4.117 16 H 0.097 0.903 17 C -0.101 4.101 18 C -0.134 4.134 19 C 0.112 3.888 20 N -0.625 5.625 21 C 0.696 3.304 22 N -0.876 5.876 23 O -0.550 6.550 24 C 0.135 3.865 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.389 0.611 40 H 0.409 0.591 41 H 0.138 0.862 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 8.928 -9.309 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.316 5.316 4 C 0.087 3.913 5 C -0.583 4.583 6 H 0.098 0.902 7 C -0.116 4.116 8 N -0.507 5.507 9 Si 0.694 3.306 10 H -0.203 1.203 11 H -0.193 1.193 12 H -0.211 1.211 13 C 0.312 3.688 14 O -0.450 6.450 15 C -0.140 4.140 16 H 0.115 0.885 17 C -0.139 4.139 18 C -0.173 4.173 19 C -0.012 4.012 20 N -0.365 5.365 21 C 0.395 3.605 22 N -0.448 5.448 23 O -0.423 6.423 24 C 0.012 3.988 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.241 0.759 41 H 0.156 0.844 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.061 8.014 -9.146 13.172 hybrid contribution -0.403 1.215 0.753 1.485 sum -5.464 9.230 -8.394 13.619 Atomic orbital electron populations 1.22113 0.96960 1.01356 1.01739 1.21263 0.93230 0.83426 1.02772 1.47992 1.62692 1.13349 1.07606 1.19880 0.97445 0.93006 0.80998 1.21174 0.94628 1.34100 1.08355 0.90244 1.24756 0.94492 0.95221 0.97128 1.69861 1.12615 1.43646 1.24569 0.87028 0.80625 0.81311 0.81681 1.20252 1.19306 1.21072 1.20216 0.78148 0.87263 0.83171 1.90586 1.52079 1.69989 1.32346 1.21637 0.97360 0.94393 1.00561 0.88526 1.21363 1.00101 0.94286 0.98146 1.21945 0.95184 0.97750 1.02408 1.21598 0.94487 0.94159 0.90982 1.47205 1.41300 1.16507 1.31440 1.16008 0.80353 0.82500 0.81627 1.43198 1.41756 1.11130 1.48675 1.91192 1.59114 1.54660 1.37355 1.21594 0.89738 0.81722 1.05750 0.92367 0.92944 0.92604 0.91208 0.90015 0.95612 0.95052 0.92592 0.90833 0.91832 0.90794 0.91511 0.91492 0.90892 0.78138 0.75914 0.84433 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.21 37.16 0.38 -2.15 16 2 C 0.12 2.13 6.06 -4.04 -0.02 2.11 16 3 N -0.59 -12.16 2.46 -175.06 -0.43 -12.59 16 4 C 0.21 4.70 4.03 -5.20 -0.02 4.68 16 5 C -0.54 -14.59 8.05 -34.44 -0.28 -14.86 16 6 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 7 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 8 N -0.87 -26.46 13.96 55.43 0.77 -25.69 16 9 Si 0.87 20.94 27.47 -169.99 -4.67 16.27 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 13 C 0.52 10.68 6.74 -10.99 -0.07 10.60 16 14 O -0.57 -12.33 15.84 5.55 0.09 -12.25 16 15 C -0.12 -2.13 2.07 -91.65 -0.19 -2.32 16 16 H 0.10 1.85 5.92 -51.93 -0.31 1.54 16 17 C -0.10 -1.46 4.69 -26.69 -0.13 -1.58 16 18 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 19 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16 20 N -0.63 -10.33 2.97 -178.49 -0.53 -10.86 16 21 C 0.70 12.87 8.57 -86.91 -0.74 12.13 16 22 N -0.88 -11.08 8.77 27.63 0.24 -10.84 16 23 O -0.55 -13.67 16.61 5.30 0.09 -13.58 16 24 C 0.14 2.63 5.68 -3.71 -0.02 2.61 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.29 7.64 -51.93 -0.40 0.90 16 29 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 30 H 0.03 0.57 7.52 -51.93 -0.39 0.18 16 31 H 0.03 0.71 4.86 -51.93 -0.25 0.46 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 1.10 7.91 -51.93 -0.41 0.68 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.61 5.58 -51.93 -0.29 0.32 16 39 H 0.39 3.48 6.32 -40.82 -0.26 3.22 16 40 H 0.41 4.76 8.93 -40.82 -0.36 4.39 16 41 H 0.14 3.35 4.74 -51.93 -0.25 3.10 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -34.36 331.66 -7.12 -41.47 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.29 Total: 9.85 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -1.38 Total: 13.22 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.05 Total: -59.98 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.18 Total: -25.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.36 -7.12 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103339912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.068 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds