Wall clock time and date at job start Tue Mar 31 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47056 * 2 1 4 4 C 1.46494 * 120.00567 * 94.51313 * 3 2 1 5 5 C 1.50701 * 109.47387 * 87.14648 * 4 3 2 6 6 H 1.08001 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99373 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00264 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47041 * 89.99694 * 9 7 5 11 11 H 1.48504 * 109.47224 * 329.99939 * 9 7 5 12 12 H 1.48500 * 109.47142 * 210.00265 * 9 7 5 13 13 C 1.34778 * 119.99840 * 274.51117 * 3 2 1 14 14 O 1.21283 * 120.00213 * 4.86634 * 13 3 2 15 15 C 1.50695 * 120.00135 * 184.86762 * 13 3 2 16 16 H 1.08996 * 109.49879 * 325.96602 * 15 13 3 17 17 C 1.53046 * 109.50017 * 205.90184 * 15 13 3 18 18 C 1.53037 * 109.54215 * 178.68053 * 17 15 13 19 19 C 1.53193 * 109.31021 * 61.36555 * 18 17 15 20 20 N 1.46927 * 108.77736 * 305.36721 * 19 18 17 21 21 C 1.34778 * 120.63192 * 233.61229 * 20 19 18 22 22 N 1.34781 * 119.99754 * 5.13400 * 21 20 19 23 23 O 1.21580 * 120.00272 * 185.14182 * 21 20 19 24 24 C 1.46933 * 118.76519 * 53.58463 * 20 19 18 25 25 H 1.08995 * 109.46865 * 175.05792 * 1 2 3 26 26 H 1.08997 * 109.46841 * 295.05583 * 1 2 3 27 27 H 1.08995 * 109.47021 * 55.05700 * 1 2 3 28 28 H 1.08994 * 109.47299 * 239.99675 * 2 1 3 29 29 H 1.09006 * 109.46972 * 119.99319 * 2 1 3 30 30 H 1.09003 * 109.46834 * 327.15409 * 4 3 2 31 31 H 1.08998 * 109.47300 * 207.15377 * 4 3 2 32 32 H 0.97004 * 119.99677 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.45840 * 298.70272 * 17 15 13 34 34 H 1.09001 * 109.46014 * 58.67360 * 17 15 13 35 35 H 1.08998 * 109.49950 * 181.31363 * 18 17 15 36 36 H 1.08999 * 109.49677 * 301.38405 * 18 17 15 37 37 H 1.09002 * 109.58821 * 65.15422 * 19 18 17 38 38 H 1.09003 * 109.58902 * 185.57700 * 19 18 17 39 39 H 0.97005 * 119.99996 * 5.09539 * 22 21 20 40 40 H 0.96996 * 120.00121 * 185.10349 * 22 21 20 41 41 H 1.08998 * 109.61319 * 186.64455 * 24 20 19 42 42 H 1.09000 * 109.55892 * 66.21816 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3567 2.0386 1.2647 5 6 3.7886 1.7339 1.6220 6 1 4.3870 1.1130 0.9718 7 6 4.3348 2.2479 2.7790 8 7 5.5846 1.9823 3.0905 9 14 3.2997 3.3212 3.9040 10 1 2.6086 2.4682 4.9040 11 1 2.2911 4.0549 3.0978 12 1 4.1762 4.2940 4.6043 13 6 2.1564 2.0471 -1.1636 14 8 1.7939 1.5356 -2.2018 15 6 2.7612 3.4273 -1.1747 16 1 2.4812 3.9546 -0.2628 17 6 2.2463 4.2010 -2.3907 18 6 2.8343 5.6139 -2.3851 19 6 4.3609 5.5277 -2.4780 20 7 4.8527 4.6650 -1.3950 21 6 5.8044 5.1026 -0.5469 22 7 6.2403 6.3758 -0.6221 23 8 6.2699 4.3489 0.2858 24 6 4.2871 3.3163 -1.2532 25 1 -0.3633 -1.0238 -0.0885 26 1 -0.3633 0.4352 0.9309 27 1 -0.3633 0.5886 -0.8424 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6995 1.6706 2.0526 31 1 2.2298 3.1161 1.1594 32 1 5.9688 2.3435 3.9047 33 1 2.5474 3.6860 -3.3029 34 1 1.1587 4.2604 -2.3494 35 1 2.4488 6.1718 -3.2384 36 1 2.5536 6.1210 -1.4620 37 1 4.6450 5.1031 -3.4409 38 1 4.7902 6.5243 -2.3748 39 1 5.8184 6.9975 -1.2357 40 1 6.9760 6.6703 -0.0629 41 1 4.6671 2.8542 -0.3421 42 1 4.5656 2.7113 -2.1159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103339912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:29 Heat of formation + Delta-G solvation = -85.994813 kcal Electronic energy + Delta-G solvation = -24316.488667 eV Core-core repulsion = 20909.666532 eV Total energy + Delta-G solvation = -3406.822136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64381 -40.61029 -38.11679 -36.96485 -35.02900 -34.56850 -33.30987 -32.75131 -31.36378 -29.40885 -26.36385 -25.62848 -24.48519 -23.66383 -22.27801 -20.57236 -19.78318 -19.30055 -18.92335 -18.01301 -17.79701 -17.19563 -16.45612 -16.27326 -15.79693 -15.68178 -15.30007 -15.09513 -14.76597 -14.71920 -14.45509 -14.06668 -14.02758 -13.71156 -13.46166 -13.34863 -13.20631 -12.67084 -12.56916 -12.36357 -12.08858 -11.96344 -11.88478 -11.84007 -11.56581 -11.47234 -11.17137 -10.73361 -10.60077 -10.57073 -9.55575 -9.43343 -8.20076 -6.24465 1.34236 1.37011 1.44548 1.52583 1.96724 2.27100 2.31457 2.36795 3.14791 3.31875 3.62775 3.83331 3.90798 4.06200 4.12611 4.19916 4.29447 4.38827 4.52250 4.55974 4.63815 4.74174 4.78435 4.88830 4.92387 4.96350 4.97902 5.04334 5.08807 5.23452 5.30698 5.42613 5.50165 5.55270 5.72525 5.94127 6.09135 6.22061 6.61628 6.77500 7.07157 7.25482 7.39938 7.77552 8.96161 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.009608 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.018649 B = 2913.483706 C = 4634.394813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.219 3.781 5 C -0.530 4.530 6 H 0.029 0.971 7 C 0.029 3.971 8 N -0.927 5.927 9 Si 0.931 3.069 10 H -0.260 1.260 11 H -0.242 1.242 12 H -0.294 1.294 13 C 0.519 3.481 14 O -0.583 6.583 15 C -0.110 4.110 16 H 0.087 0.913 17 C -0.096 4.096 18 C -0.126 4.126 19 C 0.103 3.897 20 N -0.623 5.623 21 C 0.689 3.311 22 N -0.846 5.846 23 O -0.626 6.626 24 C 0.143 3.857 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.411 0.589 40 H 0.417 0.583 41 H 0.084 0.916 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 11.630 -10.424 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 N -0.324 5.324 4 C 0.097 3.903 5 C -0.569 4.569 6 H 0.047 0.953 7 C -0.171 4.171 8 N -0.565 5.565 9 Si 0.755 3.245 10 H -0.185 1.185 11 H -0.165 1.165 12 H -0.220 1.220 13 C 0.307 3.693 14 O -0.465 6.465 15 C -0.132 4.132 16 H 0.105 0.895 17 C -0.134 4.134 18 C -0.164 4.164 19 C -0.018 4.018 20 N -0.361 5.361 21 C 0.388 3.612 22 N -0.419 5.419 23 O -0.505 6.505 24 C 0.018 3.982 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.245 0.755 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.681 10.773 -10.335 16.789 hybrid contribution 0.471 0.303 0.959 1.111 sum -7.211 11.076 -9.375 16.203 Atomic orbital electron populations 1.21996 0.94085 1.03046 1.01680 1.21442 0.95553 0.82228 1.02211 1.48082 1.62858 1.14254 1.07197 1.19643 0.94747 0.93638 0.82259 1.21240 0.96269 1.32342 1.07012 0.95269 1.25636 0.95550 0.96866 0.99063 1.70053 1.15118 1.45943 1.25412 0.85973 0.79223 0.79487 0.79799 1.18499 1.16491 1.21997 1.20676 0.77719 0.88148 0.82761 1.90565 1.52696 1.70637 1.32568 1.21612 0.95969 0.93415 1.02246 0.89454 1.21381 1.00618 0.95783 0.95638 1.21947 0.94388 0.95685 1.04331 1.22034 0.95119 0.95036 0.89618 1.47188 1.40674 1.15941 1.32307 1.16324 0.80308 0.83485 0.81102 1.42838 1.41291 1.09223 1.48550 1.91157 1.61714 1.57052 1.40553 1.21145 0.90841 0.83431 1.02788 0.89658 0.92173 0.93510 0.92033 0.90409 0.93970 0.94231 0.93000 0.91288 0.91099 0.86670 0.91395 0.90074 0.87090 0.75474 0.75050 0.89803 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 10.21 71.98 0.73 -3.64 16 2 C 0.11 3.97 6.06 86.38 0.52 4.49 16 3 N -0.59 -24.82 2.46 -826.16 -2.04 -26.86 16 4 C 0.22 9.89 4.03 85.63 0.34 10.24 16 5 C -0.53 -29.68 8.05 25.60 0.21 -29.47 16 6 H 0.03 1.89 7.84 -2.91 -0.02 1.86 16 7 C 0.03 1.69 5.47 84.66 0.46 2.15 16 8 N -0.93 -59.44 13.96 21.45 0.30 -59.14 16 9 Si 0.93 43.32 27.47 68.60 1.88 45.20 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 C 0.52 21.18 6.74 87.66 0.59 21.77 16 14 O -0.58 -25.15 15.84 -3.04 -0.05 -25.20 16 15 C -0.11 -3.95 2.07 -11.46 -0.02 -3.98 16 16 H 0.09 3.28 5.92 -2.39 -0.01 3.27 16 17 C -0.10 -2.53 4.69 30.62 0.14 -2.39 16 18 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 19 C 0.10 1.98 6.43 86.36 0.56 2.54 16 20 N -0.62 -20.14 2.97 -836.89 -2.49 -22.63 16 21 C 0.69 25.51 8.57 179.05 1.53 27.05 16 22 N -0.85 -19.73 8.77 -184.75 -1.62 -21.35 16 23 O -0.63 -32.76 16.61 -3.97 -0.07 -32.82 16 24 C 0.14 5.74 5.68 86.36 0.49 6.23 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 2.33 7.64 -2.39 -0.02 2.31 16 29 H 0.08 2.87 8.04 -2.38 -0.02 2.85 16 30 H 0.04 1.80 7.52 -2.39 -0.02 1.78 16 31 H 0.04 1.76 4.86 -2.39 -0.01 1.74 16 32 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 33 H 0.07 1.90 7.91 -2.39 -0.02 1.88 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.28 5.58 -2.39 -0.01 1.27 16 39 H 0.41 5.77 6.32 -92.70 -0.59 5.18 16 40 H 0.42 9.04 8.93 -92.71 -0.83 8.22 16 41 H 0.08 4.38 4.74 -2.39 -0.01 4.37 16 42 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -81.88 331.66 1.25 -80.62 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.42 Total: 29.24 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: 5.75 Total: 32.93 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.84 Total: -129.97 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -0.11 Total: -58.03 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -81.88 1.25 -80.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103339912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.371 kcal (2) G-P(sol) polarization free energy of solvation -81.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds